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DG8

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3'C3'sing1.43Å1.44Å
O1PPdoub1.48Å1.52Å
C3'C4'sing1.55Å1.53Å
C3'C2'sing1.55Å1.53Å
PO2Psing1.61Å1.52Å
PO5'sing1.61Å1.62Å
C4'C5'sing1.53Å1.52Å
C4'O4'sing1.44Å1.43Å
C5'O5'sing1.43Å1.43Å
C2'C1'sing1.54Å1.53Å
O4'C1'sing1.44Å1.44Å
C1'N9sing1.46Å1.48Å
C32C31doub1.32Å1.40ÅAromatic
C32C33sing1.47Å1.39ÅAromatic
N9C4sing1.37Å1.37ÅAromatic
N9C8sing1.37Å1.38ÅAromatic
N3C4sing1.34Å1.36Å
N3C2doub1.31Å1.35Å
N2C2sing1.37Å1.43Å
C31C30sing1.47Å1.40ÅAromatic
C4C5doub1.40Å1.39ÅAromatic
C41C33doub1.31Å1.39ÅAromatic
C41C40sing1.47Å1.39ÅAromatic
C2N1sing1.36Å1.38Å
N24C8sing1.38Å1.49Å
N24C25sing1.36Å1.49Å
C33C34sing1.47Å1.40ÅAromatic
C8N7doub1.31Å1.35ÅAromatic
C40C39doub1.32Å1.39ÅAromatic
C30C25doub1.31Å1.40ÅAromatic
C30C35sing1.47Å1.40ÅAromatic
C25C26sing1.47Å1.40ÅAromatic
C5N7sing1.36Å1.37ÅAromatic
C5C6sing1.41Å1.39Å
N1C6sing1.35Å1.38Å
C34C35doub1.30Å1.40ÅAromatic
C34C38sing1.48Å1.40ÅAromatic
C35C28sing1.47Å1.40ÅAromatic
C6O6doub1.22Å1.25Å
C39C38sing1.47Å1.39ÅAromatic
C26C27doub1.32Å1.40ÅAromatic
C38C37doub1.31Å1.40ÅAromatic
C28C27sing1.47Å1.39ÅAromatic
C28C36doub1.31Å1.39ÅAromatic
C37C36sing1.48Å1.40ÅAromatic
O2PH2sing0.97Å0.95Å
C5'H3sing1.09Å1.10Å
C5'H4sing1.09Å1.10Å
C4'H5sing1.09Å1.10Å
C3'H6sing1.09Å1.10Å
C2'H7sing1.09Å1.10Å
C2'H8sing1.09Å1.10Å
C1'H9sing1.09Å1.10Å
N1H10sing0.97Å1.00Å
N2H11sing0.97Å1.00Å
N2H12sing0.97Å1.00Å
N24H13sing0.97Å1.00Å
C37H14sing1.08Å1.08Å
C36H15sing1.08Å1.08Å
C27H16sing1.08Å1.08Å
C26H17sing1.08Å1.08Å
C39H18sing1.08Å1.08Å
C40H19sing1.08Å1.08Å
C41H20sing1.08Å1.08Å
C32H21sing1.08Å1.08Å
C31H22sing1.08Å1.08Å
O3'H23sing0.97Å0.95Å
PO3Psing1.61Å44.78Å
O3PH25sing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3'C3'C4'111.6°110.9°
O3'C3'C2'107.4°110.9°
O3'C3'H6112.1°110.9°
C3'O3'H23109.5°114.0°
O1PPO2P121.7°109.5°
O1PPO5'108.1°109.5°
O1PPO3P111.3°109.5°
C4'C3'C2'104.0°102.1°
C3'C4'C5'117.1°110.6°
C3'C4'O4'108.1°103.5°
C3'C4'H5107.4°110.8°
C4'C3'H6110.7°110.9°
C3'C2'C1'105.1°104.2°
C2'C3'H6110.7°110.9°
C3'C2'H7110.6°110.4°
C3'C2'H8110.6°110.4°
O2PPO5'110.5°109.5°
PO2PH2109.5°114.0°
O2PPO3P67.7°109.5°
PO5'C5'121.0°123.0°
O5'PO3P49.9°109.4°
C5'C4'O4'108.1°110.6°
C4'C5'O5'107.6°109.5°
C4'C5'H3109.9°109.5°
C4'C5'H4109.9°109.5°
C5'C4'H5107.4°110.5°
C4'O4'C1'108.5°107.0°
O4'C4'H5108.6°110.6°
O5'C5'H3110.0°109.5°
O5'C5'H4109.9°109.5°
C2'C1'O4'109.1°107.3°
C2'C1'N9107.0°109.9°
C1'C2'H7110.5°110.5°
C1'C2'H8110.5°110.5°
C2'C1'H9108.5°109.8°
O4'C1'N9113.5°109.9°
O4'C1'H9109.7°110.0°
C1'N9C4123.6°126.3°
C1'N9C8130.0°126.2°
N9C1'H9109.0°109.9°
C31C32C33119.4°120.2°
C32C31C30120.8°120.3°
C31C32H21120.3°119.9°
C32C31H22119.6°119.9°
C32C33C41119.7°121.7°
C32C33C34120.4°119.1°
C33C32H21120.3°119.9°
C4N9C8106.3°107.5°
N9C4N3131.6°134.0°
N9C4C5107.2°106.2°
N9C8N24122.0°125.2°
N9C8N7111.0°109.6°
C4N3C2120.9°121.1°
N3C4C5121.2°119.7°
N3C2N2118.8°119.0°
N3C2N1119.5°121.8°
N2C2N1121.7°119.1°
C2N2H11120.0°119.9°
C2N2H12120.0°120.0°
C31C30C25120.0°121.8°
C31C30C35119.7°119.1°
C30C31H22119.6°119.8°
C4C5N7109.2°107.4°
C4C5C6118.0°118.6°
C33C41C40119.8°122.0°
C41C33C34120.0°119.1°
C33C41H20120.1°119.0°
C41C40C39120.5°122.8°
C41C40H19119.7°118.6°
C40C41H20120.1°119.0°
C2N1C6120.6°120.3°
C2N1H10119.7°119.8°
C8N24C25117.6°120.0°
N24C8N7127.0°125.2°
C8N24H13121.2°120.1°
N24C25C30119.0°119.0°
N24C25C26122.2°119.0°
C25N24H13121.2°120.0°
C33C34C35120.4°120.6°
C33C34C38120.3°119.2°
C8N7C5106.2°109.3°
C40C39C38119.8°119.3°
C40C39H18120.1°120.3°
C39C40H19119.7°118.6°
C25C30C35120.4°119.0°
C30C25C26118.7°122.0°
C30C35C34119.4°120.5°
C30C35C28120.1°119.2°
C25C26C27121.3°122.8°
C25C26H17119.3°118.6°
N7C5C6132.8°134.0°
C5C6N1119.8°118.4°
C5C6O6118.9°120.8°
N1C6O6121.4°120.8°
C6N1H10119.7°119.9°
C35C34C38119.3°120.2°
C34C35C28120.5°120.3°
C34C38C39119.7°117.6°
C34C38C37120.1°119.7°
C35C28C27119.6°117.6°
C35C28C36120.0°119.7°
C39C38C37120.2°122.6°
C38C39H18120.1°120.3°
C26C27C28119.8°119.4°
C26C27H16120.1°120.3°
C27C26H17119.3°118.6°
C38C37C36120.7°120.0°
C38C37H14119.6°120.0°
C27C28C36120.3°122.6°
C28C27H16120.1°120.4°
C28C36C37119.4°120.0°
C28C36H15120.3°120.0°
C36C37H14119.6°120.0°
C37C36H15120.3°120.0°
H3C5'H4109.5°109.5°
H7C2'H8109.5°110.6°
H11N2H12120.0°120.0°
PO3PH2590.0°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3'C3'C4'C2'115.4°118.2°
O3'C3'C4'H6125.6°123.7°
O3'C3'C2'H6122.7°123.6°
O3'C3'C4'C5'98.9°86.3°
O3'C3'C4'O4'138.9°155.2°
O3'C3'C2'C1'135.0°139.1°
O3'C3'C4'H521.9°36.6°
O3'C3'C2'H7105.7°102.2°
O3'C3'C2'H815.7°20.4°
O1PPO2PO5'128.3°120.0°
O1PPO2PO3P102.0°120.0°
O1PPO5'O3P102.9°120.0°
O1PPO5'C5'28.0°54.9°
O1PPO2PH20.0°60.0°
O1PPO3PH2590.0°180.0°
C4'C3'C2'H6118.9°118.2°
C3'C4'C5'O4'122.3°114.1°
C3'C4'C5'H5120.8°123.0°
C3'C4'O4'H5116.2°118.7°
C3'C4'C5'O5'161.2°179.6°
C4'C3'C2'C1'16.6°20.9°
C3'C4'O4'C1'21.1°40.0°
C3'C4'C5'H379.0°59.5°
C3'C4'C5'H441.5°60.5°
C4'C3'C2'H7135.9°139.6°
C4'C3'C2'H8102.7°97.8°
C4'C3'O3'H23180.0°180.0°
C2'C3'C4'C5'145.7°155.5°
C2'C3'C4'O4'23.4°37.0°
C3'C2'C1'H7119.3°118.6°
C3'C2'C1'H8119.3°118.6°
C3'C2'C1'O4'4.8°2.0°
C3'C2'C1'N9118.4°121.5°
C2'C3'C4'H593.5°81.6°
C3'C2'H7H8122.1°122.5°
C3'C2'C1'H9124.2°117.6°
C2'C3'O3'H2366.7°67.4°
O2PPO5'O3P32.5°120.0°
O2PPO5'C5'163.4°175.0°
O2PPO3PH2590.0°59.9°
PO5'C5'C4'115.9°180.0°
O5'PO2PH2128.4°180.0°
PO5'C5'H33.8°59.9°
PO5'C5'H4124.4°60.1°
O5'PO3PH2590.0°60.0°
C5'C4'O4'H5116.2°122.8°
C4'C5'O5'H3119.7°120.0°
C4'C5'O5'H4119.7°120.0°
C5'C4'O4'C1'148.8°158.5°
C4'C5'H3H4120.8°120.0°
C5'C4'C3'H626.7°37.4°
O4'C4'C5'O5'39.0°65.5°
C4'O4'C1'C2'10.1°26.5°
C4'O4'C1'N9129.2°145.9°
O4'C4'C5'H3158.7°54.6°
O4'C4'C5'H480.7°174.6°
O4'C4'C3'H695.5°81.2°
C4'O4'C1'H9108.6°93.0°
O5'C5'H3H4120.9°120.0°
O5'C5'C4'H578.0°57.4°
C5'O5'PO3P130.9°65.1°
C2'C1'O4'N9119.2°119.5°
C2'C1'O4'H9118.7°119.4°
C2'C1'N9H9117.1°120.9°
C2'C1'N9C461.7°108.0°
C2'C1'N9C8121.0°71.7°
C1'C2'C3'H6102.3°97.3°
C1'C2'H7H8122.0°122.7°
O4'C1'N9H9122.5°121.2°
O4'C1'N9C4178.0°134.1°
O4'C1'N9C80.6°46.2°
C1'O4'C4'H595.1°78.6°
O4'C1'C2'H7124.1°116.6°
O4'C1'C2'H8114.5°120.6°
C1'N9C4C8177.9°179.7°
C1'N9C4N31.5°0.8°
C1'N9C4C5178.9°179.9°
C1'N9C8N242.8°0.0°
C1'N9C8N7178.9°180.0°
N9C1'C2'H71.0°2.8°
N9C1'C2'H8122.3°119.9°
C31C32C33H21180.0°180.0°
C32C31C30H22180.0°180.0°
C31C32C33C41179.6°180.0°
C31C32C33C340.2°0.0°
C32C31C30C25179.7°180.0°
C32C31C30C350.7°0.0°
C33C32C31C300.6°0.0°
C32C33C41C34179.7°179.9°
C32C33C41C40179.8°180.0°
C32C33C34C350.1°0.0°
C32C33C34C38179.9°180.0°
C32C33C41H200.2°0.0°
C33C32C31H22179.4°180.0°
N9C4N3C5179.6°179.0°
N9C4N3C2179.5°179.5°
C4N9C8N24179.5°179.8°
C4N9C8N71.2°0.3°
N9C4C5N70.5°0.4°
N9C4C5C6179.6°179.8°
C4N9C1'H955.4°12.9°
C8N9C4N3179.4°179.5°
C8N9C4C51.0°0.4°
N9C8N24N7177.9°179.9°
N9C8N24C25166.2°174.5°
N9C8N7C50.9°0.0°
C8N9C1'H9122.0°167.4°
N9C8N24H1313.8°5.5°
C4N3C2N2180.0°179.7°
C4N3C2N10.1°0.2°
N3C4C5N7179.9°179.6°
N3C4C5C60.1°0.5°
N3C2N2N1179.9°179.9°
C2N3C4C50.1°0.5°
N3C2N1C60.3°0.0°
N3C2N1H10179.7°180.0°
N3C2N2H110.0°180.0°
N3C2N2H12180.0°0.1°
N2C2N1C6179.8°180.0°
N2C2N1H100.2°0.0°
C2N2H11H12180.0°179.9°
C31C30C25N241.8°0.0°
C31C30C25C35179.1°180.0°
C31C30C25C26179.7°179.8°
C31C30C35C340.4°0.0°
C31C30C35C28179.7°180.0°
C30C31C32H21179.4°180.0°
C4C5N7C80.3°0.2°
C4C5N7C6179.9°179.8°
C4C5C6N10.1°0.3°
C4C5C6O6179.7°179.7°
C33C41C40H20180.0°180.0°
C33C41C40C390.1°0.1°
C41C33C34C35179.9°180.0°
C41C33C34C380.2°0.1°
C33C41C40H19179.8°180.0°
C41C33C32H210.4°0.1°
C40C41C33C340.0°0.0°
C41C40C39H19180.0°179.9°
C41C40C39C380.2°0.1°
C41C40C39H18179.8°180.0°
C2N1C6C50.3°0.0°
C2N1C6H10180.0°180.0°
C2N1C6O6179.6°180.0°
N1C2N2H11179.9°0.1°
N1C2N2H120.1°180.0°
C8N24C25H13180.0°180.0°
C8N24C25C30167.0°172.5°
C8N24C25C2615.1°7.7°
N24C8N7C5179.0°180.0°
C25N24C8N711.7°5.4°
N24C25C30C26178.0°179.8°
N24C25C30C35179.2°180.0°
N24C25C26C27179.1°179.7°
N24C25C26H170.9°0.0°
C33C34C35C300.0°0.0°
C33C34C35C38180.0°180.0°
C33C34C35C28180.0°180.0°
C33C34C38C390.1°0.1°
C33C34C38C37179.8°180.0°
C34C33C41H20180.0°180.0°
C34C33C32H21179.8°180.0°
C8N7C5C6179.6°180.0°
N7C8N24H13168.3°174.5°
C40C39C38C340.0°0.1°
C40C39C38H18180.0°179.9°
C40C39C38C37180.0°180.0°
C39C40C41H20179.9°180.0°
C25C30C35C34179.4°180.0°
C25C30C35C280.6°0.0°
C30C25C26C271.2°0.5°
C30C25N24H1313.0°7.5°
C30C25C26H17178.8°179.8°
C25C30C31H220.3°0.0°
C35C30C25C261.2°0.2°
C30C35C34C28180.0°180.0°
C30C35C34C38180.0°180.0°
C30C35C28C270.0°0.0°
C30C35C28C36179.8°180.0°
C35C30C31H22179.3°180.0°
C25C26C27H17180.0°179.7°
C25C26C27C280.6°0.5°
C26C25N24H13164.9°172.3°
C25C26C27H16179.4°179.8°
N7C5C6N1180.0°179.9°
N7C5C6O60.2°0.0°
C5C6N1O6179.8°180.0°
C5C6N1H10179.7°180.0°
C35C34C38C39179.9°179.9°
C35C34C38C370.1°0.0°
C34C35C28C27179.9°180.0°
C34C35C28C360.2°0.0°
C38C34C35C280.0°0.0°
C34C38C39C37180.0°179.9°
C34C38C37C360.1°0.0°
C34C38C37H14179.9°179.9°
C34C38C39H18180.0°180.0°
C35C28C27C260.0°0.3°
C35C28C27C36179.8°180.0°
C35C28C36C370.2°0.0°
C35C28C36H15179.8°179.9°
C35C28C27H16180.0°180.0°
O6C6N1H100.4°0.0°
C39C38C37C36179.9°179.9°
C39C38C37H140.0°0.0°
C38C39C40H19179.8°180.0°
C26C27C28H16180.0°179.7°
C26C27C28C36179.8°179.7°
C38C37C36C280.1°0.0°
C38C37C36H14180.0°180.0°
C38C37C36H15179.9°179.9°
C37C38C39H180.0°0.1°
C27C28C36C37180.0°180.0°
C27C28C36H150.0°0.1°
C28C27C26H17179.4°179.7°
C28C36C37H15180.0°179.9°
C28C36C37H14179.9°180.0°
C36C28C27H160.2°0.0°
H2O2PPO3P102.0°60.0°
H3C5'C4'H541.8°177.4°
H4C5'C4'H5162.3°62.6°
H5C4'C3'H6147.5°160.3°
H6C3'C2'H717.0°21.4°
H6C3'C2'H8138.4°144.0°
H6C3'O3'H2355.1°56.3°
H7C2'C1'H9116.5°123.8°
H8C2'C1'H94.9°1.1°
H14C37C36H150.1°0.1°
H16C27C26H170.7°0.1°
H18C39C40H190.2°0.0°
H19C40C41H200.1°0.0°
H21C32C31H220.5°0.0°

248636

PDB entries from 2026-02-04

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