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DG4

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2PP1doub1.48Å1.52Å
O6PP2doub1.48Å1.54Å
P1O1Psing1.61Å1.67Å
P1O3Psing1.61Å1.53Å
P1O4Psing1.61Å1.51Å
O7PP2sing1.61Å1.46Å
O1PC1sing1.34Å1.44Å
P2O8Psing1.61Å1.54Å
P2O5Psing1.61Å1.66Å
C1C2sing1.51Å1.57Å
C1O1doub1.21Å1.18Å
C2C3sing1.53Å1.57Å
C2O2sing1.43Å1.40Å
O5PC3sing1.43Å1.41Å
O4PH5sing0.97Å0.95Å
O3PH6sing0.97Å0.95Å
C2H1sing1.09Å1.10Å
O2H2sing0.97Å0.95Å
C3H4sing1.09Å1.10Å
C3H3sing1.09Å1.10Å
O8PH7sing0.97Å0.95Å
O7PH8sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2PP1O1P107.6°109.4°
O2PP1O3P107.1°109.5°
O2PP1O4P111.3°109.4°
O6PP2O7P109.1°109.4°
O6PP2O8P117.3°109.5°
O6PP2O5P105.5°109.5°
O1PP1O3P118.5°109.5°
O1PP1O4P106.8°109.5°
P1O1PC1122.9°117.0°
O3PP1O4P105.6°109.5°
P1O3PH6109.5°114.0°
P1O4PH5109.5°114.0°
O7PP2O8P101.4°109.5°
O7PP2O5P115.9°109.4°
P2O7PH8109.5°114.0°
O1PC1C2123.2°120.0°
O1PC1O1116.2°120.0°
O8PP2O5P108.1°109.5°
P2O8PH7109.5°114.0°
P2O5PC3118.9°123.0°
C2C1O1120.6°120.0°
C1C2C3127.0°109.5°
C1C2O2101.9°109.5°
C1C2H1106.5°109.5°
C3C2O2105.5°109.4°
C2C3O5P118.8°109.5°
C3C2H1106.5°109.5°
C2C3H4107.1°109.4°
C2C3H3107.1°109.5°
O2C2H1108.5°109.5°
C2O2H2109.5°114.0°
O5PC3H4107.1°109.5°
O5PC3H3107.1°109.5°
H4C3H3109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2PP1O1PO3P121.5°120.0°
O2PP1O1PO4P119.6°119.9°
O2PP1O3PO4P118.8°120.0°
O2PP1O1PC1108.9°55.1°
O2PP1O4PH50.0°60.0°
O2PP1O3PH60.0°180.0°
O6PP2O7PO8P124.4°120.0°
O6PP2O7PO5P118.9°120.0°
O6PP2O8PO5P119.0°120.0°
O6PP2O5PC325.4°54.9°
O6PP2O8PH780.9°60.0°
O6PP2O7PH80.0°180.0°
O1PP1O3PO4P119.5°120.0°
P1O1PC1C230.5°179.9°
P1O1PC1O1148.7°0.0°
O1PP1O4PH5117.1°180.0°
O1PP1O3PH6121.7°60.0°
O3PP1O1PC1129.6°65.0°
O3PP1O4PH5115.9°60.0°
O4PP1O1PC110.7°175.0°
O4PP1O3PH6118.8°60.1°
O7PP2O8PO5P122.3°120.0°
O7PP2O5PC3146.2°65.0°
O7PP2O8PH7160.5°60.0°
O1PC1C2O1179.2°180.0°
O1PC1C2C3158.7°65.0°
O1PC1C2O281.3°175.1°
O1PC1C2H132.3°55.0°
O8PP2O5PC3100.8°175.0°
O8PP2O7PH8124.4°59.9°
P2O5PC3C257.6°180.0°
P2O5PC3H463.8°60.0°
P2O5PC3H3178.9°59.9°
O5PP2O8PH738.2°180.0°
O5PP2O7PH8118.9°60.1°
C1C2C3O2118.5°120.0°
C1C2C3H1126.4°120.0°
C1C2O2H1112.1°120.1°
C1C2C3O5P8.0°175.1°
C1C2O2H2180.0°59.9°
C1C2C3H4129.3°65.0°
C1C2C3H3113.3°55.0°
O1C1C2C322.2°115.0°
O1C1C2O297.9°4.9°
O1C1C2H1148.6°125.0°
C3C2O2H1113.7°120.0°
C2C3O5PH4121.3°120.0°
C2C3O5PH3121.3°120.0°
C3C2O2H245.8°60.0°
C2C3H4H3115.8°120.0°
O2C2C3O5P126.4°65.0°
O2C2C3H4112.2°55.0°
O2C2C3H35.1°174.9°
O5PC3C2H1118.4°55.0°
O5PC3H4H3115.8°120.0°
H1C2O2H267.9°180.0°
H1C2C3H42.9°175.0°
H1C2C3H3120.3°65.1°

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PDB entries from 2024-07-10

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