DG3

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
PG	O1G	doub	1.48Å	1.48Å
PG	O2G	sing	1.61Å	1.48Å
PG	O3G	sing	1.61Å	1.61Å
PG	O3B	sing	1.61Å	1.62Å
O2G	HOG2	sing	0.97Å	0.95Å
O3G	HOG3	sing	0.97Å	0.95Å
O3B	PB	sing	1.61Å	1.61Å
PB	O1B	doub	1.48Å	1.48Å
PB	O2B	sing	1.61Å	1.48Å
PB	O3A	sing	1.61Å	1.62Å
O2B	HOB2	sing	0.97Å	0.95Å
O3A	PA	sing	1.61Å	1.61Å
PA	O1A	doub	1.48Å	1.48Å
PA	O2A	sing	1.61Å	1.48Å
PA	O5'	sing	1.61Å	1.59Å
O2A	HOA2	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.44Å
C5'	C4'	sing	1.53Å	1.51Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.11Å
C4'	O4'	sing	1.45Å	1.45Å
C4'	C3'	sing	1.55Å	1.52Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.44Å	1.42Å
C3'	C2'	sing	1.55Å	1.52Å
C3'	H3'1	sing	1.09Å	1.12Å
C3'	H3'2	sing	1.09Å	1.12Å
C2'	C1'	sing	1.54Å	1.53Å
C2'	H2'1	sing	1.09Å	1.12Å
C2'	H2'2	sing	1.09Å	1.11Å
C1'	N9	sing	1.46Å	1.46Å
C1'	H1'	sing	1.09Å	1.11Å
N9	C8	sing	1.37Å	1.38Å	Aromatic
N9	C4	sing	1.37Å	1.37Å	Aromatic
C8	N7	doub	1.30Å	1.30Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
N7	C5	sing	1.36Å	1.39Å	Aromatic
C5	C6	sing	1.41Å	1.42Å
C5	C4	doub	1.40Å	1.38Å	Aromatic
C6	O6	doub	1.22Å	1.24Å
C6	N1	sing	1.35Å	1.39Å
N1	C2	sing	1.36Å	1.37Å
N1	HN1	sing	0.97Å	1.02Å
C2	N2	sing	1.37Å	1.34Å
C2	N3	doub	1.31Å	1.32Å
N2	HN21	sing	0.97Å	1.02Å
N2	HN22	sing	0.97Å	1.02Å
N3	C4	sing	1.34Å	1.35Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1G	PG	O2G	119.6°	109.5°
O1G	PG	O3G	107.4°	109.5°
O1G	PG	O3B	109.8°	109.4°
O2G	PG	O3G	104.2°	109.5°
O2G	PG	O3B	110.7°	109.5°
PG	O2G	HOG2	119.6°	106.8°
O3G	PG	O3B	103.7°	109.4°
PG	O3G	HOG3	107.4°	106.9°
PG	O3B	PB	135.7°	106.8°
O3B	PB	O1B	101.6°	109.4°
O3B	PB	O2B	107.4°	109.4°
O3B	PB	O3A	106.7°	109.5°
O1B	PB	O2B	119.4°	109.5°
O1B	PB	O3A	109.2°	109.5°
O2B	PB	O3A	111.3°	109.5°
PB	O2B	HOB2	107.4°	106.8°
PB	O3A	PA	135.4°	106.8°
O3A	PA	O1A	107.6°	109.5°
O3A	PA	O2A	110.7°	109.5°
O3A	PA	O5'	96.9°	109.5°
O1A	PA	O2A	119.8°	109.5°
O1A	PA	O5'	109.4°	109.5°
O2A	PA	O5'	109.9°	109.5°
PA	O2A	HOA2	110.8°	106.8°
PA	O5'	C5'	121.3°	106.8°
O5'	C5'	C4'	110.4°	109.5°
O5'	C5'	H5'1	111.8°	109.6°
O5'	C5'	H5'2	111.9°	109.4°
C4'	C5'	H5'1	111.9°	109.4°
C4'	C5'	H5'2	111.9°	109.4°
C5'	C4'	O4'	109.4°	110.8°
C5'	C4'	C3'	116.0°	110.6°
C5'	C4'	H4'	103.6°	110.5°
H5'1	C5'	H5'2	98.5°	109.5°
O4'	C4'	C3'	104.7°	103.6°
O4'	C4'	H4'	115.2°	110.6°
C4'	O4'	C1'	109.6°	106.9°
C3'	C4'	H4'	108.4°	110.6°
C4'	C3'	C2'	102.2°	102.1°
C4'	C3'	H3'1	115.0°	110.9°
C4'	C3'	H3'2	115.0°	110.9°
O4'	C1'	C2'	107.6°	107.4°
O4'	C1'	N9	108.7°	109.9°
O4'	C1'	H1'	112.4°	109.9°
C2'	C3'	H3'1	115.0°	110.9°
C2'	C3'	H3'2	115.0°	110.9°
C3'	C2'	C1'	101.7°	104.2°
C3'	C2'	H2'1	115.2°	110.5°
C3'	C2'	H2'2	115.2°	110.5°
H3'1	C3'	H3'2	95.4°	110.8°
C1'	C2'	H2'1	115.2°	110.6°
C1'	C2'	H2'2	115.2°	110.4°
C2'	C1'	N9	112.7°	110.0°
C2'	C1'	H1'	108.4°	109.9°
H2'1	C2'	H2'2	95.3°	110.5°
N9	C1'	H1'	107.2°	109.8°
C1'	N9	C8	127.6°	126.2°
C1'	N9	C4	126.0°	126.3°
C8	N9	C4	106.4°	107.5°
N9	C8	N7	113.1°	109.8°
N9	C8	H8	125.8°	125.1°
N9	C4	C5	105.4°	106.1°
N9	C4	N3	125.9°	134.2°
N7	C8	H8	121.2°	125.1°
C8	N7	C5	104.3°	109.3°
N7	C5	C6	130.4°	134.1°
N7	C5	C4	110.8°	107.3°
C6	C5	C4	118.7°	118.6°
C5	C6	O6	128.5°	120.9°
C5	C6	N1	111.5°	118.3°
C5	C4	N3	128.7°	119.7°
O6	C6	N1	120.0°	120.8°
C6	N1	C2	125.2°	120.3°
C6	N1	HN1	118.1°	119.8°
C2	N1	HN1	116.7°	119.9°
N1	C2	N2	116.4°	119.0°
N1	C2	N3	123.9°	121.9°
N2	C2	N3	119.7°	119.1°
C2	N2	HN21	116.4°	119.9°
C2	N2	HN22	109.6°	120.1°
C2	N3	C4	112.0°	121.2°
HN21	N2	HN22	109.7°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1G	PG	O2G	O3G	119.9°	120.1°
O1G	PG	O2G	O3B	129.2°	120.0°
O1G	PG	O3G	O3B	116.2°	120.0°
O1G	PG	O2G	HOG2	180.0°	60.1°
O1G	PG	O3G	HOG3	179.9°	180.0°
O1G	PG	O3B	PB	67.1°	60.0°
O2G	PG	O3G	O3B	116.0°	120.0°
O2G	PG	O3G	HOG3	52.2°	59.9°
O2G	PG	O3B	PB	67.1°	180.0°
O3G	PG	O2G	HOG2	60.1°	60.0°
O3G	PG	O3B	PB	178.4°	60.0°
O3B	PG	O2G	HOG2	50.9°	180.0°
O3B	PG	O3G	HOG3	63.8°	60.1°
PG	O3B	PB	O1B	174.3°	60.0°
PG	O3B	PB	O2B	59.6°	60.0°
PG	O3B	PB	O3A	59.9°	180.0°
O3B	PB	O1B	O2B	117.8°	119.9°
O3B	PB	O1B	O3A	112.5°	120.0°
O3B	PB	O2B	O3A	116.5°	120.0°
O3B	PB	O2B	HOB2	180.0°	60.1°
O3B	PB	O3A	PA	118.8°	180.0°
O1B	PB	O2B	O3A	128.8°	120.1°
O1B	PB	O2B	HOB2	65.2°	180.0°
O1B	PB	O3A	PA	132.1°	60.1°
O2B	PB	O3A	PA	1.9°	60.0°
O3A	PB	O2B	HOB2	63.5°	59.9°
PB	O3A	PA	O1A	164.2°	60.0°
PB	O3A	PA	O2A	31.5°	60.0°
PB	O3A	PA	O5'	82.9°	180.0°
O3A	PA	O1A	O2A	127.6°	120.0°
O3A	PA	O1A	O5'	104.2°	120.0°
O3A	PA	O2A	O5'	105.9°	120.0°
O3A	PA	O2A	HOA2	179.9°	60.0°
O3A	PA	O5'	C5'	91.4°	180.0°
O1A	PA	O2A	O5'	127.9°	120.0°
O1A	PA	O2A	HOA2	53.8°	180.0°
O1A	PA	O5'	C5'	157.2°	60.0°
O2A	PA	O5'	C5'	23.7°	60.0°
O5'	PA	O2A	HOA2	74.1°	60.0°
PA	O5'	C5'	C4'	137.2°	180.0°
PA	O5'	C5'	H5'1	12.0°	60.0°
PA	O5'	C5'	H5'2	97.5°	60.0°
O5'	C5'	C4'	H5'1	125.2°	120.1°
O5'	C5'	C4'	H5'2	125.3°	119.9°
O5'	C5'	H5'1	H5'2	117.7°	120.0°
O5'	C5'	C4'	O4'	61.9°	65.7°
O5'	C5'	C4'	C3'	56.1°	180.0°
O5'	C5'	C4'	H4'	174.8°	57.2°
C4'	C5'	H5'1	H5'2	117.9°	119.9°
C5'	C4'	O4'	C3'	124.9°	118.7°
C5'	C4'	O4'	H4'	116.2°	122.8°
C5'	C4'	C3'	H4'	116.0°	122.8°
C5'	C4'	O4'	C1'	145.1°	158.6°
C5'	C4'	C3'	C2'	155.9°	155.7°
C5'	C4'	C3'	H3'1	30.6°	86.1°
C5'	C4'	C3'	H3'2	78.8°	37.5°
H5'1	C5'	C4'	O4'	172.9°	174.2°
H5'1	C5'	C4'	C3'	69.1°	59.9°
H5'1	C5'	C4'	H4'	49.6°	62.9°
H5'2	C5'	C4'	O4'	63.4°	54.2°
H5'2	C5'	C4'	C3'	178.6°	60.0°
H5'2	C5'	C4'	H4'	59.9°	177.1°
O4'	C4'	C3'	H4'	123.4°	118.5°
O4'	C4'	C3'	C2'	35.3°	37.0°
O4'	C4'	C3'	H3'1	90.0°	155.2°
O4'	C4'	C3'	H3'2	160.6°	81.2°
C4'	O4'	C1'	C2'	3.4°	26.3°
C4'	O4'	C1'	N9	119.0°	145.9°
C4'	O4'	C1'	H1'	122.5°	93.1°
C3'	C4'	O4'	C1'	20.2°	39.9°
C4'	C3'	C2'	H3'1	125.3°	118.2°
C4'	C3'	C2'	H3'2	125.3°	118.2°
C4'	C3'	H3'1	H3'2	120.8°	123.6°
C4'	C3'	C2'	C1'	36.2°	20.9°
C4'	C3'	C2'	H2'1	161.4°	97.9°
C4'	C3'	C2'	H2'2	89.1°	139.5°
H4'	C4'	O4'	C1'	98.7°	78.6°
H4'	C4'	C3'	C2'	88.1°	81.5°
H4'	C4'	C3'	H3'1	146.6°	36.7°
H4'	C4'	C3'	H3'2	37.2°	160.3°
O4'	C1'	C2'	C3'	25.2°	1.9°
O4'	C1'	C2'	N9	119.8°	119.6°
O4'	C1'	C2'	H1'	121.7°	119.5°
O4'	C1'	C2'	H2'1	150.5°	120.7°
O4'	C1'	C2'	H2'2	100.0°	116.7°
O4'	C1'	N9	H1'	121.7°	121.0°
O4'	C1'	N9	C8	30.4°	28.3°
O4'	C1'	N9	C4	150.2°	151.8°
C2'	C3'	H3'1	H3'2	120.9°	123.6°
C3'	C2'	C1'	H2'1	125.2°	118.8°
C3'	C2'	C1'	H2'2	125.3°	118.6°
C3'	C2'	H2'1	H2'2	121.0°	122.6°
C3'	C2'	C1'	N9	94.6°	121.5°
C3'	C2'	C1'	H1'	146.9°	117.6°
H3'1	C3'	C2'	C1'	89.1°	139.1°
H3'1	C3'	C2'	H2'1	36.1°	20.4°
H3'1	C3'	C2'	H2'2	145.6°	102.3°
H3'2	C3'	C2'	C1'	161.5°	97.3°
H3'2	C3'	C2'	H2'1	73.3°	143.9°
H3'2	C3'	C2'	H2'2	36.2°	21.3°
C1'	C2'	H2'1	H2'2	121.1°	122.6°
C2'	C1'	N9	H1'	119.1°	121.0°
C2'	C1'	N9	C8	88.8°	89.7°
C2'	C1'	N9	C4	90.7°	90.2°
H2'1	C2'	C1'	N9	30.6°	119.8°
H2'1	C2'	C1'	H1'	87.8°	1.2°
H2'2	C2'	C1'	N9	140.1°	2.9°
H2'2	C2'	C1'	H1'	21.7°	123.8°
C1'	N9	C8	C4	179.5°	179.9°
C1'	N9	C8	N7	179.3°	180.0°
C1'	N9	C8	H8	0.7°	0.1°
C1'	N9	C4	C5	179.3°	180.0°
C1'	N9	C4	N3	0.6°	0.2°
H1'	C1'	N9	C8	152.1°	149.3°
H1'	C1'	N9	C4	28.4°	30.8°
N9	C8	N7	H8	180.0°	179.9°
N9	C8	N7	C5	0.1°	0.0°
C8	N9	C4	C5	0.2°	0.1°
C8	N9	C4	N3	179.9°	179.9°
C4	N9	C8	N7	0.2°	0.1°
C4	N9	C8	H8	179.8°	180.0°
N9	C4	C5	N7	0.2°	0.1°
N9	C4	C5	C6	179.8°	179.9°
N9	C4	C5	N3	179.9°	179.8°
N9	C4	N3	C2	179.8°	179.9°
C8	N7	C5	C6	179.9°	180.0°
C8	N7	C5	C4	0.1°	0.0°
H8	C8	N7	C5	179.9°	180.0°
N7	C5	C6	C4	180.0°	180.0°
N7	C5	C6	O6	0.1°	0.0°
N7	C5	C6	N1	180.0°	179.7°
N7	C5	C4	N3	179.9°	179.9°
C5	C6	O6	N1	179.9°	179.6°
C5	C6	N1	C2	0.0°	0.6°
C5	C6	N1	HN1	180.0°	179.9°
C6	C5	C4	N3	0.1°	0.1°
C4	C5	C6	O6	179.9°	179.9°
C4	C5	C6	N1	0.1°	0.3°
C5	C4	N3	C2	0.0°	0.1°
O6	C6	N1	C2	179.9°	179.7°
O6	C6	N1	HN1	0.1°	0.4°
C6	N1	C2	HN1	180.0°	179.3°
C6	N1	C2	N2	179.9°	179.6°
C6	N1	C2	N3	0.1°	0.6°
N1	C2	N2	N3	179.9°	179.8°
N1	C2	N2	HN21	180.0°	179.7°
N1	C2	N2	HN22	54.8°	0.5°
N1	C2	N3	C4	0.0°	0.2°
HN1	N1	C2	N2	0.2°	0.3°
HN1	N1	C2	N3	179.9°	179.9°
C2	N2	HN21	HN22	125.2°	179.8°
N2	C2	N3	C4	179.9°	180.0°
N3	C2	N2	HN21	0.1°	0.1°
N3	C2	N2	HN22	125.3°	179.7°

Definition date:	1999-07-08
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1QSS