Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5 | C1 | sing | 1.43Å | 1.41Å | |
O1 | C1 | sing | 1.43Å | 1.38Å | |
C1 | C2 | sing | 1.53Å | 1.52Å | |
C1 | H1 | sing | 1.09Å | 1.10Å | |
O1 | C4' | sing | 1.43Å | 1.41Å | |
O2 | C2 | sing | 1.43Å | 1.41Å | |
C2 | C3 | sing | 1.53Å | 1.53Å | |
C2 | H2 | sing | 1.09Å | 1.10Å | |
O2 | HO2 | sing | 0.97Å | 0.95Å | |
C4 | C3 | sing | 1.53Å | 1.52Å | |
C3 | O3 | sing | 1.43Å | 1.41Å | |
C3 | H3 | sing | 1.09Å | 1.10Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
C5 | C4 | sing | 1.53Å | 1.53Å | |
C4 | O4 | sing | 1.43Å | 1.41Å | |
C4 | H4 | sing | 1.09Å | 1.10Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
O5 | C5 | sing | 1.43Å | 1.41Å | |
C5 | C6 | sing | 1.51Å | 1.52Å | |
C5 | H5 | sing | 1.09Å | 1.10Å | |
O62 | C6 | doub | 1.21Å | 1.25Å | |
C6 | O61 | sing | 1.34Å | 1.25Å | |
O61 | HO61 | sing | 0.97Å | 0.95Å | |
H1' | C1' | sing | 1.09Å | 1.10Å | |
C2' | C1' | sing | 1.53Å | 1.52Å | |
C1' | O1' | sing | 1.43Å | 1.41Å | |
C1' | O5' | sing | 1.43Å | 1.41Å | |
O1' | HO1' | sing | 0.97Å | 0.95Å | |
O2' | C2' | sing | 1.43Å | 1.41Å | |
H2' | C2' | sing | 1.09Å | 1.10Å | |
C2' | C3' | sing | 1.53Å | 1.52Å | |
O2' | HO2' | sing | 0.97Å | 0.95Å | |
O3' | C3' | sing | 1.43Å | 1.41Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
C3' | C4' | sing | 1.53Å | 1.52Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C4' | C5' | sing | 1.53Å | 1.52Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O5' | C5' | sing | 1.43Å | 1.41Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | C6' | sing | 1.51Å | 1.53Å | |
C6' | O62' | doub | 1.21Å | 1.25Å | |
C6' | O61' | sing | 1.34Å | 1.26Å | |
O61' | H61' | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O5 | C1 | O1 | 111.7° | 109.5° |
O5 | C1 | C2 | 109.3° | 109.4° |
O5 | C1 | H1 | 109.2° | 109.5° |
C1 | O5 | C5 | 112.3° | 114.1° |
O1 | C1 | C2 | 112.6° | 109.5° |
O1 | C1 | H1 | 105.6° | 109.5° |
C1 | O1 | C4' | 123.7° | 114.0° |
C2 | C1 | H1 | 108.3° | 109.5° |
C1 | C2 | O2 | 109.5° | 109.5° |
C1 | C2 | C3 | 110.4° | 109.2° |
C1 | C2 | H2 | 108.8° | 109.5° |
O1 | C4' | C3' | 109.4° | 109.5° |
O1 | C4' | C5' | 109.4° | 109.5° |
O1 | C4' | H4' | 110.1° | 109.5° |
O2 | C2 | C3 | 109.4° | 109.5° |
O2 | C2 | H2 | 109.8° | 109.6° |
C2 | O2 | HO2 | 109.5° | 114.0° |
C3 | C2 | H2 | 108.8° | 109.5° |
C2 | C3 | C4 | 111.0° | 109.0° |
C2 | C3 | O3 | 109.4° | 109.6° |
C2 | C3 | H3 | 108.4° | 109.5° |
C4 | C3 | O3 | 109.4° | 109.5° |
C4 | C3 | H3 | 108.4° | 109.6° |
C3 | C4 | C5 | 111.6° | 109.2° |
C3 | C4 | O4 | 109.5° | 109.5° |
C3 | C4 | H4 | 108.0° | 109.6° |
O3 | C3 | H3 | 110.1° | 109.6° |
C3 | O3 | HO3 | 109.5° | 114.0° |
C5 | C4 | O4 | 109.3° | 109.5° |
C5 | C4 | H4 | 108.2° | 109.5° |
C4 | C5 | O5 | 109.8° | 109.4° |
C4 | C5 | C6 | 111.3° | 109.5° |
C4 | C5 | H5 | 108.1° | 109.4° |
O4 | C4 | H4 | 110.3° | 109.5° |
C4 | O4 | HO4 | 109.5° | 114.0° |
O5 | C5 | C6 | 109.6° | 109.5° |
O5 | C5 | H5 | 109.8° | 109.5° |
C6 | C5 | H5 | 108.2° | 109.5° |
C5 | C6 | O62 | 117.9° | 120.0° |
C5 | C6 | O61 | 118.0° | 120.0° |
O62 | C6 | O61 | 124.0° | 120.0° |
C6 | O61 | HO61 | 109.5° | 116.9° |
H1' | C1' | C2' | 109.2° | 109.5° |
H1' | C1' | O1' | 112.1° | 109.5° |
H1' | C1' | O5' | 111.3° | 109.5° |
C2' | C1' | O1' | 108.6° | 109.5° |
C2' | C1' | O5' | 109.4° | 109.4° |
C1' | C2' | O2' | 111.5° | 109.5° |
C1' | C2' | H2' | 109.3° | 109.6° |
C1' | C2' | C3' | 108.0° | 109.1° |
O1' | C1' | O5' | 106.3° | 109.5° |
C1' | O1' | HO1' | 109.5° | 114.0° |
C1' | O5' | C5' | 108.1° | 114.1° |
O2' | C2' | H2' | 107.0° | 109.6° |
O2' | C2' | C3' | 110.3° | 109.5° |
C2' | O2' | HO2' | 109.5° | 114.0° |
H2' | C2' | C3' | 110.6° | 109.6° |
C2' | C3' | O3' | 110.2° | 109.5° |
C2' | C3' | H3' | 108.5° | 109.6° |
C2' | C3' | C4' | 109.9° | 109.0° |
O3' | C3' | H3' | 109.6° | 109.5° |
O3' | C3' | C4' | 108.8° | 109.6° |
C3' | O3' | HO3' | 109.5° | 114.0° |
H3' | C3' | C4' | 109.9° | 109.5° |
C3' | C4' | C5' | 111.1° | 109.1° |
C3' | C4' | H4' | 108.4° | 109.5° |
C5' | C4' | H4' | 108.4° | 109.6° |
C4' | C5' | O5' | 109.2° | 109.4° |
C4' | C5' | H5' | 109.7° | 109.5° |
C4' | C5' | C6' | 111.3° | 109.5° |
O5' | C5' | H5' | 108.0° | 109.5° |
O5' | C5' | C6' | 112.8° | 109.5° |
H5' | C5' | C6' | 105.7° | 109.5° |
C5' | C6' | O62' | 119.4° | 120.0° |
C5' | C6' | O61' | 116.9° | 120.0° |
O62' | C6' | O61' | 123.7° | 120.0° |
C6' | O61' | H61' | 109.5° | 117.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5 | C1 | O1 | C2 | 123.4° | 119.9° |
O5 | C1 | O1 | H1 | 118.6° | 120.0° |
O5 | C1 | C2 | H1 | 118.8° | 120.0° |
O5 | C1 | O1 | C4' | 117.2° | 70.0° |
O5 | C1 | C2 | O2 | 63.3° | 177.5° |
O5 | C1 | C2 | C3 | 57.3° | 57.6° |
O5 | C1 | C2 | H2 | 176.7° | 62.3° |
C1 | O5 | C5 | C4 | 63.9° | 61.1° |
C1 | O5 | C5 | C6 | 58.6° | 178.9° |
C1 | O5 | C5 | H5 | 177.3° | 58.8° |
O1 | C1 | C2 | H1 | 116.4° | 120.0° |
O1 | C1 | C2 | O2 | 61.5° | 57.5° |
O1 | C1 | C2 | C3 | 177.9° | 62.4° |
O1 | C1 | C2 | H2 | 58.5° | 177.7° |
O1 | C1 | O5 | C5 | 168.6° | 58.8° |
C1 | O1 | C4' | C3' | 90.8° | 150.0° |
C1 | O1 | C4' | C5' | 147.3° | 90.3° |
C1 | O1 | C4' | H4' | 28.2° | 29.9° |
C2 | C1 | O1 | C4' | 119.4° | 170.0° |
C1 | C2 | O2 | C3 | 121.2° | 119.7° |
C1 | C2 | O2 | H2 | 119.4° | 120.2° |
C1 | C2 | C3 | H2 | 119.4° | 119.9° |
C1 | C2 | O2 | HO2 | 180.0° | 60.0° |
C1 | C2 | C3 | C4 | 49.1° | 57.0° |
C1 | C2 | C3 | O3 | 71.7° | 176.9° |
C1 | C2 | C3 | H3 | 168.2° | 62.9° |
C2 | C1 | O5 | C5 | 66.1° | 61.2° |
H1 | C1 | O1 | C4' | 1.4° | 50.0° |
H1 | C1 | C2 | O2 | 177.9° | 62.5° |
H1 | C1 | C2 | C3 | 61.5° | 177.6° |
H1 | C1 | C2 | H2 | 57.9° | 57.7° |
H1 | C1 | O5 | C5 | 52.2° | 178.9° |
O1 | C4' | C3' | C2' | 71.2° | 62.9° |
O1 | C4' | C3' | O3' | 49.5° | 57.0° |
O1 | C4' | C3' | H3' | 169.5° | 177.2° |
O1 | C4' | C3' | C5' | 120.9° | 119.9° |
O1 | C4' | C3' | H4' | 120.1° | 120.1° |
O1 | C4' | C5' | H4' | 120.1° | 120.2° |
O1 | C4' | C5' | O5' | 64.3° | 62.3° |
O1 | C4' | C5' | H5' | 177.6° | 177.7° |
O1 | C4' | C5' | C6' | 60.9° | 57.7° |
O2 | C2 | C3 | H2 | 120.0° | 120.2° |
O2 | C2 | C3 | C4 | 71.5° | 176.9° |
O2 | C2 | C3 | O3 | 167.7° | 63.3° |
O2 | C2 | C3 | H3 | 47.6° | 57.0° |
C3 | C2 | O2 | HO2 | 58.9° | 179.7° |
C2 | C3 | C4 | O3 | 120.9° | 119.9° |
C2 | C3 | C4 | H3 | 119.0° | 119.9° |
C2 | C3 | O3 | H3 | 119.1° | 120.2° |
C2 | C3 | O3 | HO3 | 180.0° | 180.0° |
C2 | C3 | C4 | C5 | 47.5° | 57.0° |
C2 | C3 | C4 | O4 | 168.7° | 62.9° |
C2 | C3 | C4 | H4 | 71.3° | 176.9° |
H2 | C2 | O2 | HO2 | 60.6° | 60.1° |
H2 | C2 | C3 | C4 | 168.5° | 63.0° |
H2 | C2 | C3 | O3 | 47.7° | 56.9° |
H2 | C2 | C3 | H3 | 72.5° | 177.1° |
C4 | C3 | O3 | H3 | 119.1° | 120.2° |
C4 | C3 | O3 | HO3 | 58.1° | 60.4° |
C3 | C4 | C5 | O4 | 121.2° | 119.9° |
C3 | C4 | C5 | H4 | 118.6° | 120.0° |
C3 | C4 | O4 | H4 | 118.7° | 120.2° |
C3 | C4 | O4 | HO4 | 180.0° | 180.0° |
C3 | C4 | C5 | O5 | 53.5° | 57.5° |
C3 | C4 | C5 | C6 | 68.1° | 177.6° |
C3 | C4 | C5 | H5 | 173.2° | 62.4° |
O3 | C3 | C4 | C5 | 73.4° | 176.9° |
O3 | C3 | C4 | O4 | 47.8° | 57.0° |
O3 | C3 | C4 | H4 | 167.9° | 63.2° |
H3 | C3 | O3 | HO3 | 60.9° | 59.8° |
H3 | C3 | C4 | C5 | 166.5° | 62.9° |
H3 | C3 | C4 | O4 | 72.3° | 177.2° |
H3 | C3 | C4 | H4 | 47.8° | 57.1° |
C5 | C4 | O4 | H4 | 118.8° | 120.1° |
C5 | C4 | O4 | HO4 | 57.5° | 60.3° |
C4 | C5 | O5 | C6 | 122.6° | 120.0° |
C4 | C5 | O5 | H5 | 118.7° | 119.9° |
C4 | C5 | C6 | H5 | 118.6° | 120.0° |
C4 | C5 | C6 | O62 | 163.6° | 115.0° |
C4 | C5 | C6 | O61 | 16.3° | 65.0° |
O4 | C4 | C5 | O5 | 174.8° | 62.4° |
O4 | C4 | C5 | C6 | 53.2° | 57.6° |
O4 | C4 | C5 | H5 | 65.5° | 177.7° |
H4 | C4 | O4 | HO4 | 61.3° | 59.8° |
H4 | C4 | C5 | O5 | 65.1° | 177.6° |
H4 | C4 | C5 | C6 | 173.3° | 62.4° |
H4 | C4 | C5 | H5 | 54.6° | 57.7° |
O5 | C5 | C6 | H5 | 119.7° | 120.0° |
O5 | C5 | C6 | O62 | 74.7° | 5.0° |
O5 | C5 | C6 | O61 | 105.3° | 175.1° |
C5 | C6 | O62 | O61 | 179.9° | 180.0° |
C5 | C6 | O61 | HO61 | 179.9° | 180.0° |
H5 | C5 | C6 | O62 | 45.0° | 125.0° |
H5 | C5 | C6 | O61 | 135.0° | 55.0° |
O62 | C6 | O61 | HO61 | 0.0° | 0.1° |
H1' | C1' | C2' | O1' | 122.4° | 120.0° |
H1' | C1' | C2' | O5' | 122.0° | 120.0° |
H1' | C1' | O1' | O5' | 121.8° | 120.1° |
H1' | C1' | O1' | HO1' | 59.3° | 60.0° |
H1' | C1' | C2' | O2' | 53.8° | 62.5° |
H1' | C1' | C2' | H2' | 64.3° | 57.7° |
H1' | C1' | C2' | C3' | 175.2° | 177.6° |
H1' | C1' | O5' | C5' | 168.3° | 178.8° |
C2' | C1' | O1' | O5' | 117.6° | 119.9° |
C2' | C1' | O1' | HO1' | 180.0° | 180.0° |
C1' | C2' | O2' | H2' | 119.5° | 120.2° |
C1' | C2' | O2' | C3' | 120.1° | 119.6° |
C1' | C2' | H2' | C3' | 118.9° | 119.7° |
C1' | C2' | O2' | HO2' | 180.0° | 60.0° |
C1' | C2' | C3' | O3' | 171.4° | 177.0° |
C1' | C2' | C3' | H3' | 68.6° | 62.8° |
C1' | C2' | C3' | C4' | 51.6° | 57.0° |
C2' | C1' | O5' | C5' | 71.0° | 61.2° |
O1' | C1' | C2' | O2' | 68.6° | 57.5° |
O1' | C1' | C2' | H2' | 173.3° | 177.7° |
O1' | C1' | C2' | C3' | 52.8° | 62.3° |
O1' | C1' | O5' | C5' | 46.0° | 58.8° |
O5' | C1' | O1' | HO1' | 62.5° | 60.1° |
O5' | C1' | C2' | O2' | 175.8° | 177.5° |
O5' | C1' | C2' | H2' | 57.6° | 62.3° |
O5' | C1' | C2' | C3' | 62.8° | 57.6° |
C1' | O5' | C5' | C4' | 66.8° | 61.2° |
C1' | O5' | C5' | H5' | 52.4° | 58.8° |
C1' | O5' | C5' | C6' | 168.9° | 178.9° |
O2' | C2' | H2' | C3' | 120.2° | 120.1° |
O2' | C2' | C3' | O3' | 66.4° | 63.2° |
O2' | C2' | C3' | H3' | 53.6° | 57.0° |
O2' | C2' | C3' | C4' | 173.7° | 176.9° |
H2' | C2' | O2' | HO2' | 60.4° | 60.2° |
H2' | C2' | C3' | O3' | 51.8° | 57.0° |
H2' | C2' | C3' | H3' | 171.8° | 177.2° |
H2' | C2' | C3' | C4' | 68.1° | 62.9° |
C3' | C2' | O2' | HO2' | 60.0° | 179.6° |
C2' | C3' | O3' | H3' | 119.3° | 120.2° |
C2' | C3' | O3' | C4' | 120.5° | 119.6° |
C2' | C3' | H3' | C4' | 120.2° | 119.6° |
C2' | C3' | O3' | HO3' | 180.0° | 60.1° |
C2' | C3' | C4' | C5' | 49.7° | 57.0° |
C2' | C3' | C4' | H4' | 168.7° | 177.0° |
O3' | C3' | H3' | C4' | 119.5° | 120.3° |
O3' | C3' | C4' | C5' | 170.4° | 176.9° |
O3' | C3' | C4' | H4' | 70.6° | 63.1° |
H3' | C3' | O3' | HO3' | 60.7° | 60.1° |
H3' | C3' | C4' | C5' | 69.6° | 62.9° |
H3' | C3' | C4' | H4' | 49.4° | 57.1° |
C4' | C3' | O3' | HO3' | 59.4° | 179.7° |
C3' | C4' | C5' | H4' | 119.0° | 119.9° |
C3' | C4' | C5' | O5' | 56.6° | 57.6° |
C3' | C4' | C5' | H5' | 61.5° | 62.4° |
C3' | C4' | C5' | C6' | 178.2° | 177.6° |
C4' | C5' | O5' | H5' | 119.2° | 120.0° |
C4' | C5' | O5' | C6' | 124.3° | 119.9° |
C4' | C5' | H5' | C6' | 120.1° | 120.0° |
C4' | C5' | C6' | O62' | 129.4° | 115.0° |
C4' | C5' | C6' | O61' | 51.0° | 65.1° |
H4' | C4' | C5' | O5' | 175.7° | 177.6° |
H4' | C4' | C5' | H5' | 57.5° | 57.6° |
H4' | C4' | C5' | C6' | 59.1° | 62.5° |
O5' | C5' | H5' | C6' | 121.0° | 120.0° |
O5' | C5' | C6' | O62' | 6.3° | 4.9° |
O5' | C5' | C6' | O61' | 174.2° | 175.0° |
H5' | C5' | C6' | O62' | 111.6° | 125.0° |
H5' | C5' | C6' | O61' | 68.0° | 55.0° |
C5' | C6' | O62' | O61' | 179.5° | 180.0° |
C5' | C6' | O61' | H61' | 179.5° | 180.0° |
O62' | C6' | O61' | H61' | 0.0° | 0.0° |