Obsolete: DFC
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | sing | 1.61Å | 1.61Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
P | OP1 | doub | 1.48Å | 1.49Å | |
P | OP2 | sing | 1.61Å | 1.48Å | |
P | O5' | sing | 1.61Å | 1.59Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.43Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.45Å | 1.45Å | |
C4' | C3' | sing | 1.54Å | 1.53Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.42Å | |
C3' | O3' | sing | 1.43Å | 1.43Å | |
C3' | C2' | sing | 1.54Å | 1.52Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
C2' | H2'' | sing | 1.09Å | 1.11Å | |
C1' | N1 | sing | 1.46Å | 1.47Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N1 | C2 | sing | 1.34Å | 1.40Å | |
N1 | C6 | sing | 1.36Å | 1.37Å | |
C2 | O2 | doub | 1.22Å | 1.24Å | |
C2 | N3 | sing | 1.33Å | 1.35Å | |
N3 | C4 | doub | 1.33Å | 1.34Å | |
C4 | N4 | sing | 1.38Å | 1.33Å | |
C4 | C5 | sing | 1.41Å | 1.42Å | |
N4 | H41 | sing | 0.97Å | 1.02Å | |
N4 | H42 | sing | 0.97Å | 1.02Å | |
C5 | C6 | doub | 1.35Å | 1.34Å | |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP3 | HOP3 | 107.7° | 106.8° |
OP3 | P | OP1 | 107.7° | 109.4° |
OP3 | P | OP2 | 108.2° | 109.5° |
OP3 | P | O5' | 104.1° | 109.4° |
OP1 | P | OP2 | 119.5° | 109.5° |
OP1 | P | O5' | 108.1° | 109.5° |
OP2 | P | O5' | 108.1° | 109.5° |
P | OP2 | HOP2 | 108.2° | 106.8° |
P | O5' | C5' | 121.2° | 106.8° |
O5' | C5' | C4' | 110.2° | 109.5° |
O5' | C5' | H5' | 112.0° | 109.4° |
O5' | C5' | H5'' | 111.9° | 109.4° |
C4' | C5' | H5' | 111.9° | 109.5° |
C4' | C5' | H5'' | 111.9° | 109.5° |
C5' | C4' | O4' | 108.8° | 110.5° |
C5' | C4' | C3' | 115.0° | 110.4° |
C5' | C4' | H4' | 105.0° | 110.3° |
H5' | C5' | H5'' | 98.5° | 109.5° |
O4' | C4' | C3' | 105.6° | 104.9° |
O4' | C4' | H4' | 114.4° | 110.3° |
C4' | O4' | C1' | 110.4° | 105.2° |
C3' | C4' | H4' | 108.2° | 110.4° |
C4' | C3' | O3' | 110.5° | 110.6° |
C4' | C3' | C2' | 103.1° | 104.1° |
C4' | C3' | H3' | 113.4° | 110.5° |
O4' | C1' | C2' | 106.6° | 104.9° |
O4' | C1' | N1 | 108.0° | 110.4° |
O4' | C1' | H1' | 114.1° | 110.4° |
O3' | C3' | C2' | 110.6° | 110.5° |
O3' | C3' | H3' | 106.2° | 110.4° |
C3' | O3' | HO3' | 110.5° | 106.8° |
C2' | C3' | H3' | 113.2° | 110.5° |
C3' | C2' | C1' | 102.5° | 104.1° |
C3' | C2' | H2' | 114.9° | 110.5° |
C3' | C2' | H2'' | 114.9° | 110.5° |
C1' | C2' | H2' | 114.8° | 110.5° |
C1' | C2' | H2'' | 114.8° | 110.5° |
C2' | C1' | N1 | 114.3° | 110.4° |
C2' | C1' | H1' | 107.8° | 110.3° |
H2' | C2' | H2'' | 95.6° | 110.5° |
N1 | C1' | H1' | 106.3° | 110.4° |
C1' | N1 | C2 | 118.9° | 119.9° |
C1' | N1 | C6 | 120.7° | 119.9° |
C2 | N1 | C6 | 120.3° | 120.3° |
N1 | C2 | O2 | 119.0° | 119.4° |
N1 | C2 | N3 | 119.2° | 121.1° |
N1 | C6 | C5 | 121.1° | 119.3° |
N1 | C6 | H6 | 120.5° | 120.3° |
O2 | C2 | N3 | 121.8° | 119.5° |
C2 | N3 | C4 | 120.0° | 120.7° |
N3 | C4 | N4 | 117.9° | 120.2° |
N3 | C4 | C5 | 122.0° | 119.6° |
N4 | C4 | C5 | 120.1° | 120.2° |
C4 | N4 | H41 | 117.9° | 120.0° |
C4 | N4 | H42 | 109.2° | 120.0° |
C4 | C5 | C6 | 117.4° | 119.0° |
C4 | C5 | H5 | 124.2° | 120.5° |
H41 | N4 | H42 | 109.3° | 120.0° |
C6 | C5 | H5 | 118.3° | 120.5° |
C5 | C6 | H6 | 118.4° | 120.3° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | OP2 | 123.9° | 120.0° |
OP3 | P | OP1 | O5' | 111.9° | 119.9° |
OP3 | P | OP2 | O5' | 112.2° | 120.0° |
OP3 | P | OP2 | HOP2 | 180.0° | 60.0° |
OP3 | P | O5' | C5' | 85.4° | 180.0° |
HOP3 | OP3 | P | OP1 | 179.9° | 60.0° |
HOP3 | OP3 | P | OP2 | 49.5° | 60.0° |
HOP3 | OP3 | P | O5' | 65.3° | 180.0° |
OP1 | P | OP2 | O5' | 124.1° | 120.1° |
OP1 | P | OP2 | HOP2 | 56.3° | 180.0° |
OP1 | P | O5' | C5' | 29.0° | 60.1° |
OP2 | P | O5' | C5' | 159.7° | 60.0° |
O5' | P | OP2 | HOP2 | 67.8° | 60.0° |
P | O5' | C5' | C4' | 139.7° | 180.0° |
P | O5' | C5' | H5' | 14.5° | 60.0° |
P | O5' | C5' | H5'' | 95.0° | 60.0° |
O5' | C5' | C4' | H5' | 125.3° | 120.0° |
O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
O5' | C5' | H5' | H5'' | 117.9° | 119.9° |
O5' | C5' | C4' | O4' | 148.2° | 64.4° |
O5' | C5' | C4' | C3' | 30.0° | 180.0° |
O5' | C5' | C4' | H4' | 88.8° | 57.7° |
C4' | C5' | H5' | H5'' | 117.8° | 120.0° |
C5' | C4' | O4' | C3' | 124.0° | 119.0° |
C5' | C4' | O4' | H4' | 117.1° | 122.2° |
C5' | C4' | C3' | H4' | 117.0° | 122.2° |
C5' | C4' | O4' | C1' | 115.3° | 159.3° |
C5' | C4' | C3' | O3' | 148.7° | 98.4° |
C5' | C4' | C3' | C2' | 93.1° | 142.9° |
C5' | C4' | C3' | H3' | 29.6° | 24.3° |
H5' | C5' | C4' | O4' | 22.9° | 55.5° |
H5' | C5' | C4' | C3' | 95.3° | 60.0° |
H5' | C5' | C4' | H4' | 145.9° | 177.7° |
H5'' | C5' | C4' | O4' | 86.5° | 175.6° |
H5'' | C5' | C4' | C3' | 155.3° | 60.0° |
H5'' | C5' | C4' | H4' | 36.5° | 62.2° |
O4' | C4' | C3' | H4' | 123.0° | 118.7° |
O4' | C4' | C3' | O3' | 91.3° | 142.6° |
O4' | C4' | C3' | C2' | 26.9° | 23.9° |
O4' | C4' | C3' | H3' | 149.7° | 94.8° |
C4' | O4' | C1' | C2' | 13.3° | 40.3° |
C4' | O4' | C1' | N1 | 136.6° | 159.2° |
C4' | O4' | C1' | H1' | 105.5° | 78.5° |
C3' | C4' | O4' | C1' | 8.7° | 40.3° |
C4' | C3' | O3' | C2' | 113.5° | 114.7° |
C4' | C3' | O3' | H3' | 123.3° | 122.7° |
C4' | C3' | C2' | H3' | 122.9° | 118.6° |
C4' | C3' | O3' | HO3' | 180.0° | 176.2° |
C4' | C3' | C2' | C1' | 33.9° | 0.0° |
C4' | C3' | C2' | H2' | 159.1° | 118.7° |
C4' | C3' | C2' | H2'' | 91.3° | 118.7° |
H4' | C4' | O4' | C1' | 127.6° | 78.4° |
H4' | C4' | C3' | O3' | 31.7° | 23.9° |
H4' | C4' | C3' | C2' | 149.9° | 94.8° |
H4' | C4' | C3' | H3' | 87.4° | 146.5° |
O4' | C1' | C2' | C3' | 29.7° | 23.9° |
O4' | C1' | C2' | N1 | 119.2° | 118.9° |
O4' | C1' | C2' | H1' | 122.9° | 118.9° |
O4' | C1' | C2' | H2' | 155.0° | 142.6° |
O4' | C1' | C2' | H2'' | 95.6° | 94.7° |
O4' | C1' | N1 | H1' | 122.8° | 122.3° |
O4' | C1' | N1 | C2 | 151.4° | 57.0° |
O4' | C1' | N1 | C6 | 28.6° | 122.9° |
O3' | C3' | C2' | H3' | 119.0° | 122.6° |
O3' | C3' | C2' | C1' | 84.2° | 118.8° |
O3' | C3' | C2' | H2' | 41.0° | 0.1° |
O3' | C3' | C2' | H2'' | 150.6° | 122.6° |
C2' | C3' | O3' | HO3' | 66.5° | 61.5° |
C3' | C2' | C1' | H2' | 125.3° | 118.7° |
C3' | C2' | C1' | H2'' | 125.3° | 118.6° |
C3' | C2' | H2' | H2'' | 120.8° | 122.6° |
C3' | C2' | C1' | N1 | 148.9° | 142.8° |
C3' | C2' | C1' | H1' | 93.2° | 95.0° |
H3' | C3' | O3' | HO3' | 56.7° | 61.1° |
H3' | C3' | C2' | C1' | 156.8° | 118.6° |
H3' | C3' | C2' | H2' | 78.0° | 122.7° |
H3' | C3' | C2' | H2'' | 31.5° | 0.0° |
C1' | C2' | H2' | H2'' | 120.7° | 122.7° |
C2' | C1' | N1 | H1' | 118.8° | 122.2° |
C2' | C1' | N1 | C2 | 90.2° | 58.5° |
C2' | C1' | N1 | C6 | 89.8° | 121.6° |
H2' | C2' | C1' | N1 | 85.8° | 98.5° |
H2' | C2' | C1' | H1' | 32.1° | 23.7° |
H2'' | C2' | C1' | N1 | 23.6° | 24.2° |
H2'' | C2' | C1' | H1' | 141.5° | 146.4° |
C1' | N1 | C2 | C6 | 179.9° | 180.0° |
C1' | N1 | C2 | O2 | 0.1° | 0.0° |
C1' | N1 | C2 | N3 | 179.9° | 180.0° |
C1' | N1 | C6 | C5 | 179.8° | 179.8° |
C1' | N1 | C6 | H6 | 0.2° | 0.0° |
H1' | C1' | N1 | C2 | 28.6° | 179.3° |
H1' | C1' | N1 | C6 | 151.5° | 0.7° |
N1 | C2 | O2 | N3 | 179.9° | 180.0° |
N1 | C2 | N3 | C4 | 0.0° | 0.0° |
C2 | N1 | C6 | C5 | 0.1° | 0.3° |
C2 | N1 | C6 | H6 | 179.9° | 179.9° |
C6 | N1 | C2 | O2 | 180.0° | 180.0° |
C6 | N1 | C2 | N3 | 0.1° | 0.0° |
N1 | C6 | C5 | C4 | 0.1° | 0.5° |
N1 | C6 | C5 | H6 | 180.0° | 179.8° |
N1 | C6 | C5 | H5 | 180.0° | 179.9° |
O2 | C2 | N3 | C4 | 180.0° | 180.0° |
C2 | N3 | C4 | N4 | 179.9° | 180.0° |
C2 | N3 | C4 | C5 | 0.0° | 0.2° |
N3 | C4 | N4 | C5 | 179.9° | 179.8° |
N3 | C4 | N4 | H41 | 179.9° | 0.1° |
N3 | C4 | N4 | H42 | 54.7° | 179.8° |
N3 | C4 | C5 | C6 | 0.0° | 0.5° |
N3 | C4 | C5 | H5 | 180.0° | 180.0° |
C4 | N4 | H41 | H42 | 125.3° | 179.8° |
N4 | C4 | C5 | C6 | 179.9° | 179.7° |
N4 | C4 | C5 | H5 | 0.1° | 0.2° |
C5 | C4 | N4 | H41 | 0.2° | 179.8° |
C5 | C4 | N4 | H42 | 125.2° | 0.4° |
C4 | C5 | C6 | H5 | 180.0° | 179.6° |
C4 | C5 | C6 | H6 | 179.9° | 179.7° |
H5 | C5 | C6 | H6 | 0.0° | 0.2° |