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Summary Geometry Related PDB entries

DEP

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.51Å	1.51Å
C1	O1	sing	1.42Å	1.45Å
C1	H11	sing	1.09Å	1.11Å
C1	H12	sing	1.09Å	1.12Å
C2	H21	sing	1.09Å	1.12Å
C2	H22	sing	1.10Å	1.12Å
C2	H23	sing	1.09Å	1.12Å
C3	C4	sing	1.51Å	1.53Å
C3	O2	sing	1.42Å	1.43Å
C3	H31	sing	1.09Å	1.12Å
C3	H32	sing	1.09Å	1.11Å
C4	H41	sing	1.09Å	1.11Å
C4	H42	sing	1.09Å	1.12Å
C4	H43	sing	1.10Å	1.11Å
O1	P	sing	1.63Å	1.63Å
O2	P	sing	1.63Å	1.60Å
O3	P	doub	1.51Å	1.48Å
HP1	P	sing	1.41Å	1.42Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O1	109.2°	109.0°
C2	C1	H11	112.3°	110.5°
C2	C1	H12	112.2°	110.6°
C1	C2	H21	109.2°	110.9°
C1	C2	H22	112.3°	110.6°
C1	C2	H23	112.3°	110.7°
O1	C1	H11	112.3°	108.7°
O1	C1	H12	112.3°	108.8°
C1	O1	P	123.5°	117.4°
H11	C1	H12	98.2°	109.2°
H21	C2	H22	112.2°	108.8°
H21	C2	H23	112.2°	108.8°
H22	C2	H23	98.2°	106.9°
C4	C3	O2	103.7°	109.0°
C4	C3	H31	114.4°	110.6°
C4	C3	H32	114.5°	110.5°
C3	C4	H41	103.7°	110.9°
C3	C4	H42	114.4°	110.7°
C3	C4	H43	114.4°	110.6°
O2	C3	H31	114.4°	108.8°
O2	C3	H32	114.4°	108.8°
C3	O2	P	125.0°	118.3°
H31	C3	H32	96.0°	109.1°
H41	C4	H42	114.4°	108.8°
H41	C4	H43	114.5°	108.8°
H42	C4	H43	96.0°	106.9°
O1	P	O2	110.5°	101.3°
O1	P	O3	106.3°	111.8°
O1	P	HP1	112.3°	103.8°
O2	P	O3	113.4°	111.3°
O2	P	HP1	105.1°	103.8°
O3	P	HP1	109.4°	122.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O1	H11	125.2°	120.5°
C2	C1	O1	H12	125.2°	120.7°
C2	C1	H11	H12	118.2°	121.8°
C1	C2	H21	H22	125.3°	121.9°
C1	C2	H21	H23	125.3°	122.0°
C1	C2	H22	H23	118.3°	120.6°
C2	C1	O1	P	172.4°	180.0°
O1	C1	H11	H12	118.3°	118.6°
O1	C1	C2	H21	180.0°	180.0°
O1	C1	C2	H22	54.8°	59.2°
O1	C1	C2	H23	54.8°	59.1°
C1	O1	P	O2	49.6°	167.5°
C1	O1	P	O3	173.0°	73.9°
C1	O1	P	HP1	67.4°	60.0°
H11	C1	C2	H21	54.7°	60.5°
H11	C1	C2	H22	70.5°	178.6°
H11	C1	C2	H23	179.9°	60.4°
H11	C1	O1	P	62.4°	59.4°
H12	C1	C2	H21	54.7°	60.5°
H12	C1	C2	H22	180.0°	60.4°
H12	C1	C2	H23	70.5°	178.6°
H12	C1	O1	P	47.2°	59.4°
H21	C2	H22	H23	118.2°	117.4°
C4	C3	O2	H31	125.3°	120.6°
C4	C3	O2	H32	125.3°	120.6°
C4	C3	H31	H32	120.3°	121.7°
C3	C4	H41	H42	125.2°	122.0°
C3	C4	H41	H43	125.3°	121.8°
C3	C4	H42	H43	120.2°	120.5°
C4	C3	O2	P	116.5°	180.0°
O2	C3	H31	H32	120.2°	118.6°
O2	C3	C4	H41	180.0°	180.0°
O2	C3	C4	H42	54.7°	59.1°
O2	C3	C4	H43	54.7°	59.2°
C3	O2	P	O1	89.5°	47.5°
C3	O2	P	O3	29.6°	166.4°
C3	O2	P	HP1	149.1°	60.0°
H31	C3	C4	H41	54.7°	60.4°
H31	C3	C4	H42	70.5°	178.7°
H31	C3	C4	H43	179.9°	60.4°
H31	C3	O2	P	118.2°	59.4°
H32	C3	C4	H41	54.8°	60.5°
H32	C3	C4	H42	180.0°	60.4°
H32	C3	C4	H43	70.6°	178.7°
H32	C3	O2	P	8.8°	59.4°
H41	C4	H42	H43	120.4°	117.3°
O1	P	O2	O3	119.2°	118.9°
O1	P	O2	HP1	121.4°	107.5°
O1	P	O3	HP1	121.5°	124.0°
O2	P	O3	HP1	116.9°	123.5°

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