Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DEB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.51Å1.52Å
C1O16sing1.41Å1.43Å
C1O17doub1.20Å1.23Å
C2C3sing1.51Å1.54Å
C2C18sing1.50Å1.52Å
C2H2sing1.11Å1.12Å
C3C4sing1.57Å1.54Å
C3O19sing1.43Å1.43Å
C3H3sing1.10Å1.11Å
C4C5sing1.46Å1.55Å
C4C20sing1.60Å1.53Å
C4H4sing1.10Å1.11Å
C5C6sing1.56Å1.55Å
C5O21sing1.41Å1.43Å
C5H5sing1.06Å1.11Å
C6C7sing1.56Å1.54Å
C6C22sing1.53Å1.52Å
C6H6sing1.07Å1.12Å
C7C8sing1.58Å1.54Å
C7H71sing1.12Å1.11Å
C7H72sing1.07Å1.11Å
C8C9sing1.50Å1.53Å
C8C23sing1.57Å1.51Å
C8H8sing1.12Å1.12Å
C9C10sing1.54Å1.54Å
C9O24doub1.19Å1.23Å
C10C11sing1.54Å1.56Å
C10C25sing1.49Å1.53Å
C10H10sing1.06Å1.12Å
C11C12sing1.52Å1.54Å
C11O26sing1.47Å1.44Å
C11H11sing1.17Å1.12Å
C12C13sing1.57Å1.55Å
C12C27sing1.49Å1.53Å
C12H12sing1.04Å1.11Å
C13C14sing1.56Å1.53Å
C13O16sing1.38Å1.38Å
C13H13sing1.13Å1.11Å
C14C15sing1.53Å1.52Å
C14H141sing1.09Å1.11Å
C14H142sing1.09Å1.12Å
C15H151sing1.09Å1.11Å
C15H152sing1.09Å1.12Å
C15H153sing1.09Å1.11Å
C18H181sing1.09Å1.12Å
C18H182sing1.09Å1.11Å
C18H183sing1.09Å1.11Å
O19HO9sing0.97Å0.95Å
C20H201sing1.09Å1.12Å
C20H202sing1.09Å1.12Å
C20H203sing1.09Å1.11Å
O21HO1sing0.97Å0.95Å
C22H221sing1.09Å1.11Å
C22H222sing1.09Å1.12Å
C22H223sing1.09Å1.11Å
C23H231sing1.09Å1.11Å
C23H232sing1.09Å1.12Å
C23H233sing1.09Å1.12Å
C25H251sing1.09Å1.11Å
C25H252sing1.09Å1.11Å
C25H253sing1.09Å1.12Å
O26HO6sing0.97Å0.95Å
C27H271sing1.09Å1.12Å
C27H272sing1.09Å1.11Å
C27H273sing1.09Å1.12Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O16118.9°119.4°
C2C1O17121.1°122.2°
C1C2C3109.5°106.8°
C1C2C18110.6°107.5°
C1C2H2109.3°107.0°
O16C1O17119.9°118.4°
C1O16C13128.2°122.1°
C3C2C18111.1°107.5°
C3C2H2108.8°112.8°
C2C3C4113.1°108.4°
C2C3O19109.6°111.1°
C2C3H3106.8°115.4°
C18C2H2107.5°114.8°
C2C18H181110.6°109.4°
C2C18H182111.8°109.4°
C2C18H183111.8°109.5°
C4C3O19109.2°109.8°
C4C3H3107.2°104.9°
C3C4C5108.7°111.5°
C3C4C20111.0°107.7°
C3C4H4109.7°110.9°
O19C3H3110.8°106.9°
C3O19HO9109.6°106.8°
C5C4C20111.7°108.0°
C5C4H4109.0°110.2°
C4C5C6124.4°111.7°
C4C5O21109.7°112.2°
C4C5H597.8°111.2°
C20C4H4106.6°108.4°
C4C20H201111.0°109.5°
C4C20H202111.6°109.4°
C4C20H203111.7°109.5°
C6C5O21109.5°106.2°
C6C5H598.1°105.4°
C5C6C7111.0°106.9°
C5C6C22111.1°110.3°
C5C6H6107.6°110.0°
O21C5H5116.9°109.9°
C5O21HO1109.8°106.8°
C7C6C22110.5°112.0°
C7C6H6108.3°105.7°
C6C7C8120.1°110.2°
C6C7H71108.4°112.5°
C6C7H72108.4°113.3°
C22C6H6108.2°111.8°
C6C22H221111.1°109.4°
C6C22H222111.7°109.5°
C6C22H223111.6°109.5°
C8C7H71108.5°107.6°
C8C7H72108.4°102.1°
C7C8C9110.8°110.0°
C7C8C23112.0°110.9°
C7C8H8107.2°110.0°
H71C7H72101.5°110.6°
C9C8C23110.5°109.8°
C9C8H8108.9°110.4°
C8C9C10119.1°120.6°
C8C9O24120.3°118.8°
C23C8H8107.4°105.8°
C8C23H231112.0°109.5°
C8C23H232111.3°109.5°
C8C23H233111.3°109.4°
C10C9O24120.6°120.4°
C9C10C11110.2°107.6°
C9C10C25110.8°108.4°
C9C10H10108.8°110.2°
C11C10C25111.4°106.2°
C11C10H10108.1°114.4°
C10C11C12116.9°112.5°
C10C11O26110.0°110.2°
C10C11H11103.8°108.7°
C25C10H10107.5°109.9°
C10C25H251110.7°109.5°
C10C25H252111.7°109.5°
C10C25H253111.7°109.4°
C12C11O26109.5°109.8°
C12C11H11104.4°112.3°
C11C12C13109.5°107.9°
C11C12C27110.7°107.1°
C11C12H12109.0°107.5°
O26C11H11112.1°102.8°
C11O26HO6110.0°106.8°
C13C12C27110.6°106.0°
C13C12H12109.1°115.8°
C12C13C14110.6°106.4°
C12C13O16110.4°111.0°
C12C13H13107.6°108.4°
C27C12H12107.9°112.3°
C12C27H271110.7°109.5°
C12C27H272111.8°109.5°
C12C27H273111.7°109.5°
C14C13O16107.9°112.3°
C14C13H13110.1°105.2°
C13C14C15113.7°109.5°
C13C14H141110.7°109.4°
C13C14H142110.6°109.5°
O16C13H13110.2°113.1°
C15C14H141110.7°109.4°
C15C14H142110.7°109.5°
C14C15H151113.7°109.5°
C14C15H152110.7°109.5°
C14C15H153110.7°109.5°
H141C14H14299.6°109.4°
H151C15H152110.6°109.5°
H151C15H153110.7°109.5°
H152C15H15399.6°109.4°
H181C18H182111.8°109.5°
H181C18H183111.8°109.5°
H182C18H18398.6°109.5°
H201C20H202111.6°109.4°
H201C20H203111.7°109.5°
H202C20H20398.7°109.4°
H221C22H222111.5°109.5°
H221C22H223111.6°109.5°
H222C22H22398.7°109.5°
H231C23H232111.3°109.4°
H231C23H233111.3°109.5°
H232C23H23399.0°109.4°
H251C25H252111.8°109.5°
H251C25H253111.8°109.5°
H252C25H25398.7°109.4°
H271C27H272111.8°109.5°
H271C27H273111.8°109.5°
H272C27H27398.6°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O16O17177.1°177.1°
C1C2C3C18122.5°115.2°
C1C2C3H2119.3°117.3°
C1C2C18H2119.3°118.9°
C1C2C3C462.0°114.4°
C1C2C3O19175.8°124.8°
C1C2C3H355.7°2.9°
C2C1O16C13179.8°173.9°
C1C2C18H181180.0°59.9°
C1C2C18H18254.7°180.0°
C1C2C18H18354.8°60.1°
O16C1C2C3114.7°147.3°
O16C1C2C18122.5°97.6°
O16C1C2H24.3°26.3°
C1O16C13C1299.8°112.8°
C1O16C13C14139.2°128.2°
C1O16C13H1318.9°9.3°
O17C1C2C368.2°29.7°
O17C1C2C1854.6°85.5°
O17C1C2H2172.8°150.7°
O17C1O16C133.1°3.2°
C3C2C18H2118.9°126.4°
C2C3C4O19122.4°121.5°
C2C3C4H3117.5°123.9°
C2C3O19H3117.7°126.7°
C2C3C4C5169.7°144.9°
C2C3C4C2067.0°96.8°
C2C3C4H450.6°21.7°
C3C2C18H18158.2°174.6°
C3C2C18H18267.1°65.4°
C3C2C18H183176.6°54.6°
C2C3O19HO9180.0°59.9°
C18C2C3C4175.5°130.5°
C18C2C3O1953.3°9.7°
C18C2C3H366.8°112.2°
C2C18H181H182125.3°120.0°
C2C18H181H183125.2°120.0°
C2C18H182H183117.7°120.0°
H2C2C3C457.3°2.9°
H2C2C3O1964.8°117.9°
H2C2C3H3175.1°120.2°
H2C2C18H18160.7°59.0°
H2C2C18H182174.0°61.0°
H2C2C18H18364.5°179.0°
C4C3O19H3117.9°113.3°
C3C4C5C20122.9°118.1°
C3C4C5H4119.6°123.6°
C3C4C20H4119.4°120.1°
C3C4C5C6166.5°123.5°
C3C4C5O2161.1°117.4°
C3C4C5H561.1°6.1°
C4C3O19HO955.6°179.9°
C3C4C20H201180.0°60.0°
C3C4C20H20254.8°180.0°
C3C4C20H20354.7°60.0°
O19C3C4C567.9°93.5°
O19C3C4C2055.4°24.8°
O19C3C4H4172.9°143.3°
H3C3C4C552.2°21.1°
H3C3C4C20175.5°139.4°
H3C3C4H466.9°102.1°
H3C3O19HO962.4°66.8°
C5C4C20H4119.0°119.4°
C4C5C6O21132.5°122.6°
C4C5C6H5105.3°120.9°
C4C5O21H5110.1°124.2°
C4C5C6C747.2°52.0°
C4C5C6C2276.2°69.9°
C4C5C6H6165.5°166.3°
C5C4C20H20158.4°179.5°
C5C4C20H20266.8°59.5°
C5C4C20H203176.3°60.5°
C4C5O21HO1180.0°180.0°
C20C4C5C670.7°118.4°
C20C4C5O2161.7°0.7°
C20C4C5H5176.0°124.2°
C4C20H201H202125.2°120.0°
C4C20H201H203125.4°120.1°
C4C20H202H203117.6°120.0°
H4C4C5C646.9°0.2°
H4C4C5O21179.3°119.0°
H4C4C5H558.5°117.6°
H4C4C20H20160.6°60.1°
H4C4C20H202174.2°59.9°
H4C4C20H20364.7°179.9°
C6C5O21H5110.2°113.5°
C5C6C7C22123.7°120.9°
C5C6C7H6118.0°117.2°
C5C6C22H6117.9°122.7°
C5C6C7C854.5°174.1°
C5C6C7H71179.8°54.1°
C5C6C7H7270.8°72.2°
C6C5O21HO140.3°57.7°
C5C6C22H221180.0°180.0°
C5C6C22H22254.7°60.0°
C5C6C22H22354.7°60.0°
O21C5C6C7179.6°174.6°
O21C5C6C2256.2°52.7°
O21C5C6H662.0°71.1°
H5C5C6C758.1°68.8°
H5C5C6C22178.5°169.2°
H5C5C6H660.3°45.5°
H5C5O21HO170.0°55.8°
C7C6C22H6118.4°118.3°
C6C7C8H71125.3°122.9°
C6C7C8H72125.2°120.7°
C6C7H71H72114.0°127.7°
C6C7C8C9176.5°136.2°
C6C7C8C2359.7°102.2°
C6C7C8H857.9°14.4°
C7C6C22H22156.4°61.1°
C7C6C22H222178.4°179.0°
C7C6C22H22368.9°58.9°
C22C6C7C8178.2°53.2°
C22C6C7H7156.5°66.8°
C22C6C7H7252.9°166.9°
C6C22H221H222125.3°120.0°
C6C22H221H223125.3°120.0°
C6C22H222H223117.5°120.1°
H6C6C7C863.5°68.7°
H6C6C7H7161.8°171.2°
H6C6C7H72171.2°45.0°
H6C6C22H22162.0°57.3°
H6C6C22H22263.2°62.7°
H6C6C22H223172.7°177.3°
C8C7H71H72114.1°110.7°
C7C8C9C23124.7°122.2°
C7C8C9H8117.6°121.5°
C7C8C23H8117.4°119.2°
C7C8C9C1061.1°80.7°
C7C8C9O24118.3°103.5°
C7C8C23H231180.0°180.0°
C7C8C23H23254.7°60.0°
C7C8C23H23354.7°60.0°
H71C7C8C958.2°100.9°
H71C7C8C2365.6°20.7°
H71C7C8H8176.8°137.4°
H72C7C8C951.3°15.5°
H72C7C8C23175.1°137.1°
H72C7C8H867.3°106.2°
C9C8C23H8118.6°119.1°
C8C9C10O24179.4°175.7°
C8C9C10C1154.8°69.2°
C8C9C10C25178.6°176.4°
C8C9C10H1063.5°56.1°
C9C8C23H23156.1°58.4°
C9C8C23H232178.7°178.4°
C9C8C23H23369.3°61.7°
C23C8C9C10174.2°41.5°
C23C8C9O246.4°134.3°
C8C23H231H232125.3°120.0°
C8C23H231H233125.3°120.0°
C8C23H232H233117.1°119.9°
H8C8C9C1056.5°157.8°
H8C8C9O24124.1°18.0°
H8C8C23H23162.5°60.7°
H8C8C23H23262.7°59.3°
H8C8C23H233172.1°179.2°
C9C10C11C25123.4°115.9°
C9C10C11H10118.7°122.7°
C9C10C25H10118.7°120.4°
C9C10C11C12174.8°160.9°
C9C10C11O2659.5°76.1°
C9C10C11H1160.6°35.9°
C9C10C25H251180.0°60.0°
C9C10C25H25254.7°180.0°
C9C10C25H25354.7°60.1°
O24C9C10C11125.8°115.1°
O24C9C10C252.1°0.7°
O24C9C10H10115.9°119.6°
C11C10C25H10118.2°124.2°
C10C11C12O26125.9°123.2°
C10C11C12H11113.9°123.1°
C10C11O26H11114.9°115.8°
C10C11C12C13179.8°175.1°
C10C11C12C2758.0°61.4°
C10C11C12H1260.5°59.4°
C11C10C25H25157.0°175.3°
C11C10C25H25268.3°64.7°
C11C10C25H253177.8°55.3°
C10C11O26HO6180.0°60.0°
C25C10C11C1261.8°83.2°
C25C10C11O2663.9°39.8°
C25C10C11H11176.0°151.8°
C10C25H251H252125.2°120.0°
C10C25H251H253125.2°120.0°
C10C25H252H253117.6°119.9°
H10C10C11C1256.1°38.2°
H10C10C11O26178.2°161.1°
H10C10C11H1158.1°86.8°
H10C10C25H25161.3°60.5°
H10C10C25H252173.4°59.5°
H10C10C25H25364.0°179.4°
C12C11O26H11115.3°119.7°
C11C12C13C27122.2°114.4°
C11C12C13H12119.2°120.4°
C11C12C27H12119.2°117.7°
C11C12C13C14173.6°168.4°
C11C12C13O1667.0°69.1°
C11C12C13H1353.3°55.7°
C12C11O26HO650.3°175.4°
C11C12C27H271180.0°180.0°
C11C12C27H27254.7°60.0°
C11C12C27H27354.7°60.0°
O26C11C12C1353.9°61.7°
O26C11C12C27176.1°175.4°
O26C11C12H1265.4°63.8°
H11C11C12C1366.3°52.1°
H11C11C12C2755.9°61.6°
H11C11C12H12174.4°177.6°
H11C11O26HO665.0°55.7°
C13C12C27H12119.2°127.3°
C12C13C14O16120.9°121.7°
C12C13C14H13118.8°114.9°
C12C13O16H13118.7°122.1°
C12C13C14C15171.8°175.0°
C12C13C14H14146.5°65.1°
C12C13C14H14262.9°54.9°
C13C12C27H27158.4°65.1°
C13C12C27H272176.3°175.0°
C13C12C27H27366.8°55.0°
C27C12C13C1464.2°77.2°
C27C12C13O1655.2°45.3°
C27C12C13H13175.5°170.0°
C12C27H271H272125.3°120.0°
C12C27H271H273125.2°120.0°
C12C27H272H273117.6°120.0°
H12C12C13C1454.3°48.0°
H12C12C13O16173.7°170.5°
H12C12C13H1366.0°64.8°
H12C12C27H27160.8°62.3°
H12C12C27H27264.5°57.7°
H12C12C27H273173.9°177.7°
C14C13O16H13120.3°118.9°
C13C14C15H141125.3°120.0°
C13C14C15H142125.2°120.1°
C13C14H141H142116.5°120.0°
C13C14C15H151180.0°180.0°
C13C14C15H15254.7°59.9°
C13C14C15H15354.7°60.0°
O16C13C14C1567.3°63.4°
O16C13C14H141167.4°56.6°
O16C13C14H14258.0°176.6°
H13C13C14C1553.0°60.0°
H13C13C14H14172.3°180.0°
H13C13C14H142178.3°60.1°
C15C14H141H142116.5°120.0°
C14C15H151H152125.3°120.1°
C14C15H151H153125.3°120.0°
C14C15H152H153116.6°120.0°
H141C14C15H15154.7°60.0°
H141C14C15H152180.0°60.0°
H141C14C15H15370.6°180.0°
H142C14C15H15154.7°60.0°
H142C14C15H15270.5°180.0°
H142C14C15H153180.0°60.0°
H151C15H152H153116.5°120.0°
H181C18H182H183117.7°120.0°
H201C20H202H203117.5°120.0°
H221C22H222H223117.5°120.0°
H231C23H232H233117.2°120.0°
H251C25H252H253117.7°120.0°
H271C27H272H273117.7°120.0°

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon