DDX
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.50Å | 1.48Å | |
| P | OP2 | sing | 1.62Å | 1.48Å | |
| P | OP3 | sing | 1.62Å | 51.66Å | |
| P | O5' | sing | 1.62Å | 1.60Å | |
| OP2 | HOP2 | sing | 0.98Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.98Å | 0.95Å | |
| O5' | C5' | sing | 1.42Å | 1.39Å | |
| C5' | C4' | sing | 1.52Å | 1.55Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C4' | C3' | sing | 1.49Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C1' | C2' | sing | 1.48Å | 1.50Å | |
| C1' | O1' | sing | 1.42Å | 1.39Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| C3' | C2' | doub | 1.33Å | 1.33Å | |
| C3' | H3' | sing | 1.08Å | 1.10Å | |
| C2' | H2' | sing | 1.08Å | 1.10Å | |
| O1' | HO1' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.4° | 115.3° |
| OP1 | P | OP3 | 95.2° | 115.0° |
| OP1 | P | O5' | 109.2° | 115.0° |
| OP2 | P | OP3 | 87.7° | 103.3° |
| OP2 | P | O5' | 108.3° | 103.8° |
| P | OP2 | HOP2 | 119.5° | 118.9° |
| OP3 | P | O5' | 37.0° | 102.9° |
| P | OP3 | HOP3 | 95.2° | 118.9° |
| P | O5' | C5' | 119.1° | 118.5° |
| O5' | C5' | C4' | 110.6° | 108.8° |
| O5' | C5' | H5' | 111.8° | 109.1° |
| O5' | C5' | H5'' | 111.8° | 109.0° |
| C4' | C5' | H5' | 111.7° | 110.3° |
| C4' | C5' | H5'' | 111.7° | 110.3° |
| C5' | C4' | O4' | 109.3° | 108.7° |
| C5' | C4' | C3' | 115.2° | 113.0° |
| C5' | C4' | H4' | 104.4° | 110.4° |
| H5' | C5' | H5'' | 98.7° | 109.4° |
| O4' | C4' | C3' | 105.1° | 105.6° |
| O4' | C4' | H4' | 114.6° | 108.3° |
| C4' | O4' | C1' | 109.9° | 108.5° |
| C3' | C4' | H4' | 108.6° | 110.7° |
| C4' | C3' | C2' | 109.8° | 109.8° |
| C4' | C3' | H3' | 130.0° | 125.2° |
| O4' | C1' | C2' | 105.6° | 105.7° |
| O4' | C1' | O1' | 103.8° | 111.5° |
| O4' | C1' | H1' | 122.0° | 108.1° |
| C2' | C1' | O1' | 124.1° | 111.6° |
| C2' | C1' | H1' | 100.5° | 111.4° |
| C1' | C2' | C3' | 109.2° | 109.9° |
| C1' | C2' | H2' | 130.1° | 125.0° |
| O1' | C1' | H1' | 102.5° | 108.4° |
| C1' | O1' | HO1' | 103.8° | 106.8° |
| C2' | C3' | H3' | 120.1° | 125.0° |
| C3' | C2' | H2' | 120.8° | 125.1° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 94.6° | 126.3° |
| OP1 | P | OP2 | O5' | 125.9° | 126.6° |
| OP1 | P | OP3 | O5' | 115.4° | 125.7° |
| OP1 | P | OP2 | HOP2 | 179.9° | 48.8° |
| OP1 | P | OP3 | HOP3 | 180.0° | 48.1° |
| OP1 | P | O5' | C5' | 30.7° | 180.0° |
| OP2 | P | OP3 | O5' | 125.2° | 107.7° |
| OP2 | P | OP3 | HOP3 | 60.6° | 78.4° |
| OP2 | P | O5' | C5' | 162.3° | 53.1° |
| OP3 | P | OP2 | HOP2 | 85.3° | 77.5° |
| OP3 | P | O5' | C5' | 103.0° | 54.3° |
| O5' | P | OP2 | HOP2 | 54.1° | 175.4° |
| O5' | P | OP3 | HOP3 | 64.6° | 173.8° |
| P | O5' | C5' | C4' | 151.6° | 180.0° |
| P | O5' | C5' | H5' | 26.4° | 59.6° |
| P | O5' | C5' | H5'' | 83.2° | 59.7° |
| O5' | C5' | C4' | H5' | 125.3° | 119.6° |
| O5' | C5' | C4' | H5'' | 125.2° | 119.5° |
| O5' | C5' | H5' | H5'' | 117.7° | 119.1° |
| O5' | C5' | C4' | O4' | 103.3° | 57.3° |
| O5' | C5' | C4' | C3' | 14.7° | 59.6° |
| O5' | C5' | C4' | H4' | 133.7° | 175.9° |
| C4' | C5' | H5' | H5'' | 117.7° | 121.5° |
| C5' | C4' | O4' | C3' | 124.1° | 121.5° |
| C5' | C4' | O4' | H4' | 116.7° | 119.9° |
| C5' | C4' | C3' | H4' | 116.6° | 124.4° |
| C5' | C4' | O4' | C1' | 118.0° | 128.5° |
| C5' | C4' | C3' | C2' | 116.8° | 123.3° |
| C5' | C4' | C3' | H3' | 63.2° | 58.0° |
| H5' | C5' | C4' | O4' | 131.4° | 176.9° |
| H5' | C5' | C4' | C3' | 110.6° | 60.0° |
| H5' | C5' | C4' | H4' | 8.4° | 64.5° |
| H5'' | C5' | C4' | O4' | 21.9° | 62.2° |
| H5'' | C5' | C4' | C3' | 139.9° | 179.1° |
| H5'' | C5' | C4' | H4' | 101.1° | 56.4° |
| O4' | C4' | C3' | H4' | 123.0° | 116.9° |
| C4' | O4' | C1' | C2' | 6.3° | 6.7° |
| C4' | O4' | C1' | O1' | 138.2° | 114.8° |
| C4' | O4' | C1' | H1' | 107.2° | 126.1° |
| O4' | C4' | C3' | C2' | 3.6° | 4.6° |
| O4' | C4' | C3' | H3' | 176.4° | 176.7° |
| C3' | C4' | O4' | C1' | 6.1° | 7.0° |
| C4' | C3' | C2' | C1' | 0.3° | 0.5° |
| C4' | C3' | C2' | H3' | 180.0° | 178.7° |
| C4' | C3' | C2' | H2' | 179.7° | 179.1° |
| H4' | C4' | O4' | C1' | 125.3° | 111.6° |
| H4' | C4' | C3' | C2' | 126.6° | 112.3° |
| H4' | C4' | C3' | H3' | 53.4° | 66.4° |
| O4' | C1' | C2' | O1' | 119.2° | 121.4° |
| O4' | C1' | C2' | H1' | 127.7° | 117.2° |
| O4' | C1' | O1' | H1' | 127.8° | 118.9° |
| O4' | C1' | C2' | C3' | 4.0° | 3.9° |
| O4' | C1' | C2' | H2' | 176.0° | 176.5° |
| O4' | C1' | O1' | HO1' | 180.0° | 84.6° |
| C2' | C1' | O1' | H1' | 112.1° | 123.1° |
| C1' | C2' | C3' | H2' | 180.0° | 179.6° |
| C1' | C2' | C3' | H3' | 179.7° | 179.1° |
| C2' | C1' | O1' | HO1' | 59.9° | 157.4° |
| O1' | C1' | C2' | C3' | 123.2° | 117.5° |
| O1' | C1' | C2' | H2' | 56.8° | 62.1° |
| H1' | C1' | C2' | C3' | 123.7° | 121.1° |
| H1' | C1' | C2' | H2' | 56.3° | 59.3° |
| H1' | C1' | O1' | HO1' | 52.1° | 34.3° |
| H3' | C3' | C2' | H2' | 0.3° | 0.5° |
