DDO
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.45Å | |
| N | HN1 | sing | 1.01Å | 1.02Å | |
| N | HN2 | sing | 1.01Å | 1.02Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | HA1 | sing | 1.09Å | 1.11Å | |
| CB | CG | sing | 1.53Å | 1.51Å | |
| CB | HB1 | sing | 1.09Å | 1.11Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CG | CD | sing | 1.53Å | 1.52Å | |
| CG | HG1 | sing | 1.09Å | 1.11Å | |
| CG | HG2 | sing | 1.09Å | 1.12Å | |
| CD | CE | sing | 1.53Å | 1.53Å | |
| CD | HD1 | sing | 1.09Å | 1.11Å | |
| CD | HD2 | sing | 1.09Å | 1.12Å | |
| CE | OZ | sing | 1.43Å | 1.42Å | |
| CE | HE1 | sing | 1.09Å | 1.11Å | |
| CE | HE2 | sing | 1.09Å | 1.12Å | |
| OZ | HOZ | sing | 0.97Å | 0.95Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| C | OXT | sing | 1.34Å | 1.25Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | HN1 | 111.0° | 106.7° |
| CA | N | HN2 | 111.6° | 106.7° |
| N | CA | CB | 111.0° | 109.5° |
| N | CA | C | 112.0° | 109.4° |
| N | CA | HA1 | 106.6° | 109.5° |
| HN1 | N | HN2 | 111.6° | 106.7° |
| CB | CA | C | 109.5° | 109.6° |
| CB | CA | HA1 | 109.3° | 109.5° |
| CA | CB | CG | 114.5° | 109.5° |
| CA | CB | HB1 | 110.3° | 109.5° |
| CA | CB | HB2 | 110.3° | 109.5° |
| C | CA | HA1 | 108.3° | 109.4° |
| CA | C | O | 115.9° | 120.1° |
| CA | C | OXT | 120.0° | 120.0° |
| CG | CB | HB1 | 110.4° | 109.5° |
| CG | CB | HB2 | 110.4° | 109.5° |
| CB | CG | CD | 110.8° | 109.5° |
| CB | CG | HG1 | 111.7° | 109.4° |
| CB | CG | HG2 | 111.7° | 109.5° |
| HB1 | CB | HB2 | 99.9° | 109.4° |
| CD | CG | HG1 | 111.8° | 109.4° |
| CD | CG | HG2 | 111.8° | 109.5° |
| CG | CD | CE | 112.0° | 109.5° |
| CG | CD | HD1 | 111.3° | 109.4° |
| CG | CD | HD2 | 111.3° | 109.5° |
| HG1 | CG | HG2 | 98.6° | 109.5° |
| CE | CD | HD1 | 111.3° | 109.5° |
| CE | CD | HD2 | 111.3° | 109.5° |
| CD | CE | OZ | 112.1° | 109.5° |
| CD | CE | HE1 | 111.3° | 109.5° |
| CD | CE | HE2 | 111.2° | 109.5° |
| HD1 | CD | HD2 | 99.1° | 109.5° |
| OZ | CE | HE1 | 111.2° | 109.4° |
| OZ | CE | HE2 | 111.2° | 109.5° |
| CE | OZ | HOZ | 112.2° | 106.9° |
| HE1 | CE | HE2 | 99.1° | 109.5° |
| O | C | OXT | 124.1° | 119.9° |
| C | OXT | HXT | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | HN1 | HN2 | 125.3° | 113.8° |
| N | CA | CB | C | 124.1° | 120.0° |
| N | CA | CB | HA1 | 117.4° | 120.0° |
| N | CA | C | HA1 | 117.3° | 119.9° |
| N | CA | CB | CG | 58.3° | 60.0° |
| N | CA | CB | HB1 | 176.4° | 180.0° |
| N | CA | CB | HB2 | 67.0° | 60.1° |
| N | CA | C | O | 107.2° | 30.1° |
| N | CA | C | OXT | 73.2° | 150.0° |
| HN1 | N | CA | CB | 180.0° | 60.0° |
| HN1 | N | CA | C | 57.3° | 60.1° |
| HN1 | N | CA | HA1 | 61.0° | 180.0° |
| HN2 | N | CA | CB | 54.8° | 173.9° |
| HN2 | N | CA | C | 67.9° | 53.8° |
| HN2 | N | CA | HA1 | 173.8° | 66.1° |
| CB | CA | C | HA1 | 119.1° | 120.1° |
| CA | CB | CG | HB1 | 125.2° | 120.0° |
| CA | CB | CG | HB2 | 125.2° | 120.1° |
| CA | CB | HB1 | HB2 | 116.2° | 119.9° |
| CA | CB | CG | CD | 158.4° | 180.0° |
| CA | CB | CG | HG1 | 76.3° | 60.0° |
| CA | CB | CG | HG2 | 33.1° | 60.0° |
| CB | CA | C | O | 129.2° | 89.9° |
| CB | CA | C | OXT | 50.4° | 90.0° |
| C | CA | CB | CG | 177.6° | 180.0° |
| C | CA | CB | HB1 | 52.3° | 60.0° |
| C | CA | CB | HB2 | 57.2° | 59.9° |
| CA | C | O | OXT | 179.6° | 179.9° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| HA1 | CA | CB | CG | 59.1° | 60.0° |
| HA1 | CA | CB | HB1 | 66.2° | 60.0° |
| HA1 | CA | CB | HB2 | 175.6° | 179.9° |
| HA1 | CA | C | O | 10.1° | 150.0° |
| HA1 | CA | C | OXT | 169.5° | 30.1° |
| CG | CB | HB1 | HB2 | 116.3° | 120.0° |
| CB | CG | CD | HG1 | 125.3° | 120.0° |
| CB | CG | CD | HG2 | 125.3° | 120.0° |
| CB | CG | HG1 | HG2 | 117.6° | 120.0° |
| CB | CG | CD | CE | 78.1° | 180.0° |
| CB | CG | CD | HD1 | 47.1° | 60.0° |
| CB | CG | CD | HD2 | 156.6° | 60.0° |
| HB1 | CB | CG | CD | 33.1° | 60.0° |
| HB1 | CB | CG | HG1 | 158.4° | 180.0° |
| HB1 | CB | CG | HG2 | 92.2° | 60.0° |
| HB2 | CB | CG | CD | 76.4° | 59.9° |
| HB2 | CB | CG | HG1 | 48.9° | 60.0° |
| HB2 | CB | CG | HG2 | 158.3° | 180.0° |
| CD | CG | HG1 | HG2 | 117.7° | 120.0° |
| CG | CD | CE | HD1 | 125.2° | 120.0° |
| CG | CD | CE | HD2 | 125.2° | 120.0° |
| CG | CD | HD1 | HD2 | 117.2° | 120.0° |
| CG | CD | CE | OZ | 57.6° | 180.0° |
| CG | CD | CE | HE1 | 177.1° | 60.0° |
| CG | CD | CE | HE2 | 67.6° | 60.0° |
| HG1 | CG | CD | CE | 156.6° | 60.0° |
| HG1 | CG | CD | HD1 | 78.2° | NaN° |
| HG1 | CG | CD | HD2 | 31.3° | 60.0° |
| HG2 | CG | CD | CE | 47.1° | 60.0° |
| HG2 | CG | CD | HD1 | 172.4° | 60.0° |
| HG2 | CG | CD | HD2 | 78.1° | 180.0° |
| CE | CD | HD1 | HD2 | 117.2° | 120.0° |
| CD | CE | OZ | HE1 | 125.3° | 120.0° |
| CD | CE | OZ | HE2 | 125.3° | 120.0° |
| CD | CE | HE1 | HE2 | 117.1° | 120.0° |
| CD | CE | OZ | HOZ | 180.0° | 180.0° |
| HD1 | CD | CE | OZ | 67.6° | 60.0° |
| HD1 | CD | CE | HE1 | 57.7° | 180.0° |
| HD1 | CD | CE | HE2 | 167.2° | 60.0° |
| HD2 | CD | CE | OZ | 177.1° | 60.0° |
| HD2 | CD | CE | HE1 | 51.9° | 60.0° |
| HD2 | CD | CE | HE2 | 57.6° | 180.0° |
| OZ | CE | HE1 | HE2 | 117.1° | 120.0° |
| HE1 | CE | OZ | HOZ | 54.7° | 60.0° |
| HE2 | CE | OZ | HOZ | 54.7° | 60.0° |
| O | C | OXT | HXT | 0.5° | 0.1° |
