DDN
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | doub | 1.48Å | 1.52Å | |
| P | OP1 | sing | 1.61Å | 1.50Å | |
| P | OP2 | sing | 1.61Å | 1.52Å | |
| P | O5' | sing | 1.61Å | 1.63Å | |
| OP1 | H1P | sing | 0.97Å | 0.95Å | |
| OP2 | H2P | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.52Å | |
| C5' | H5' | sing | 1.09Å | 1.12Å | |
| C5' | H5'' | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.45Å | 1.43Å | |
| C4' | C3' | sing | 1.54Å | 1.54Å | |
| C4' | H4' | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.40Å | |
| C3' | C2' | sing | 1.54Å | 1.48Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | H1 | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.55Å | 1.50Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| C2' | H2'' | sing | 1.09Å | 1.12Å | |
| C1' | N1 | sing | 1.46Å | 1.64Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| N1 | C2 | sing | 1.34Å | 1.41Å | |
| N1 | C6 | sing | 1.39Å | 1.38Å | |
| C2 | O2 | doub | 1.22Å | 1.23Å | |
| C2 | N3 | sing | 1.35Å | 1.40Å | |
| N3 | C4 | sing | 1.47Å | 1.57Å | |
| N3 | HN3 | sing | 0.97Å | 1.02Å | |
| C4 | O4 | sing | 1.43Å | 1.44Å | |
| C4 | C5 | sing | 1.51Å | 1.55Å | |
| C4 | H4 | sing | 1.09Å | 1.12Å | |
| O4 | HO4 | sing | 0.97Å | 0.95Å | |
| C5 | C6 | doub | 1.32Å | 1.37Å | |
| C5 | H5 | sing | 1.08Å | 1.10Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP3 | P | OP1 | 112.6° | 109.5° |
| OP3 | P | OP2 | 111.5° | 109.4° |
| OP3 | P | O5' | 107.2° | 109.5° |
| OP1 | P | OP2 | 114.4° | 109.5° |
| OP1 | P | O5' | 105.0° | 109.5° |
| P | OP1 | H1P | 112.7° | 106.8° |
| OP2 | P | O5' | 105.5° | 109.4° |
| P | OP2 | H2P | 111.5° | 106.8° |
| P | O5' | C5' | 121.0° | 106.8° |
| O5' | C5' | C4' | 109.2° | 109.5° |
| O5' | C5' | H5' | 112.3° | 109.5° |
| O5' | C5' | H5'' | 112.3° | 109.5° |
| C4' | C5' | H5' | 112.3° | 109.4° |
| C4' | C5' | H5'' | 112.3° | 109.4° |
| C5' | C4' | O4' | 111.6° | 110.4° |
| C5' | C4' | C3' | 114.7° | 110.7° |
| C5' | C4' | H4' | 103.3° | 110.3° |
| H5' | C5' | H5'' | 98.1° | 109.5° |
| O4' | C4' | C3' | 106.4° | 104.7° |
| O4' | C4' | H4' | 112.1° | 110.4° |
| C4' | O4' | C1' | 102.4° | 105.4° |
| C3' | C4' | H4' | 108.8° | 110.2° |
| C4' | C3' | O3' | 110.5° | 110.5° |
| C4' | C3' | C2' | 107.2° | 104.2° |
| C4' | C3' | H3' | 110.4° | 110.5° |
| O4' | C1' | C2' | 116.3° | 104.8° |
| O4' | C1' | N1 | 97.8° | 110.5° |
| O4' | C1' | H1' | 149.1° | 110.4° |
| O3' | C3' | C2' | 109.8° | 110.5° |
| O3' | C3' | H3' | 107.8° | 110.4° |
| C3' | O3' | H1 | 110.5° | 106.8° |
| C2' | C3' | H3' | 111.1° | 110.5° |
| C3' | C2' | C1' | 99.1° | 104.0° |
| C3' | C2' | H2' | 116.2° | 110.5° |
| C3' | C2' | H2'' | 116.2° | 110.5° |
| C1' | C2' | H2' | 116.2° | 110.5° |
| C1' | C2' | H2'' | 116.2° | 110.5° |
| C2' | C1' | N1 | 143.2° | 110.4° |
| C2' | C1' | H1' | 60.3° | 110.4° |
| H2' | C2' | H2'' | 94.2° | 110.6° |
| N1 | C1' | H1' | 97.4° | 110.4° |
| C1' | N1 | C2 | 118.0° | 118.3° |
| C1' | N1 | C6 | 106.5° | 118.3° |
| C2 | N1 | C6 | 124.4° | 123.4° |
| N1 | C2 | O2 | 123.9° | 119.1° |
| N1 | C2 | N3 | 114.4° | 121.8° |
| N1 | C6 | C5 | 120.7° | 121.3° |
| N1 | C6 | H6 | 120.1° | 119.4° |
| O2 | C2 | N3 | 121.3° | 119.2° |
| C2 | N3 | C4 | 123.4° | 118.3° |
| C2 | N3 | HN3 | 112.0° | 120.8° |
| C4 | N3 | HN3 | 124.6° | 120.9° |
| N3 | C4 | O4 | 113.0° | 107.9° |
| N3 | C4 | C5 | 111.0° | 117.2° |
| N3 | C4 | H4 | 105.1° | 107.9° |
| O4 | C4 | C5 | 106.7° | 107.9° |
| O4 | C4 | H4 | 109.5° | 107.8° |
| C4 | O4 | HO4 | 113.1° | 106.8° |
| C5 | C4 | H4 | 111.6° | 107.9° |
| C4 | C5 | C6 | 120.7° | 118.1° |
| C4 | C5 | H5 | 126.0° | 120.9° |
| C6 | C5 | H5 | 113.3° | 121.0° |
| C5 | C6 | H6 | 119.2° | 119.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 128.6° | 119.9° |
| OP3 | P | OP1 | O5' | 116.3° | 120.1° |
| OP3 | P | OP2 | O5' | 116.0° | 120.0° |
| OP3 | P | OP1 | H1P | 180.0° | 60.0° |
| OP3 | P | OP2 | H2P | 180.0° | 179.9° |
| OP3 | P | O5' | C5' | 169.8° | 55.0° |
| OP1 | P | OP2 | O5' | 114.8° | 120.0° |
| OP1 | P | OP2 | H2P | 50.8° | 60.0° |
| OP1 | P | O5' | C5' | 49.8° | 175.0° |
| OP2 | P | OP1 | H1P | 51.4° | 60.0° |
| OP2 | P | O5' | C5' | 71.4° | 65.0° |
| O5' | P | OP1 | H1P | 63.8° | 180.0° |
| O5' | P | OP2 | H2P | 64.1° | 60.1° |
| P | O5' | C5' | C4' | 156.0° | 180.0° |
| P | O5' | C5' | H5' | 30.7° | 60.1° |
| P | O5' | C5' | H5'' | 78.7° | 60.0° |
| O5' | C5' | C4' | H5' | 125.3° | 120.0° |
| O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
| O5' | C5' | H5' | H5'' | 118.2° | 120.1° |
| O5' | C5' | C4' | O4' | 158.7° | 66.4° |
| O5' | C5' | C4' | C3' | 80.2° | 178.1° |
| O5' | C5' | C4' | H4' | 38.1° | 55.8° |
| C4' | C5' | H5' | H5'' | 118.2° | 119.9° |
| C5' | C4' | O4' | C3' | 125.8° | 119.2° |
| C5' | C4' | O4' | H4' | 115.3° | 122.2° |
| C5' | C4' | C3' | H4' | 115.1° | 122.4° |
| C5' | C4' | O4' | C1' | 99.7° | 159.5° |
| C5' | C4' | C3' | O3' | 147.1° | 98.5° |
| C5' | C4' | C3' | C2' | 93.2° | 142.7° |
| C5' | C4' | C3' | H3' | 28.0° | 24.0° |
| H5' | C5' | C4' | O4' | 76.0° | 173.5° |
| H5' | C5' | C4' | C3' | 45.1° | 58.1° |
| H5' | C5' | C4' | H4' | 163.3° | 64.2° |
| H5'' | C5' | C4' | O4' | 33.4° | 53.6° |
| H5'' | C5' | C4' | C3' | 154.5° | 61.9° |
| H5'' | C5' | C4' | H4' | 87.2° | 175.8° |
| O4' | C4' | C3' | H4' | 121.0° | 118.7° |
| O4' | C4' | C3' | O3' | 88.9° | 142.5° |
| O4' | C4' | C3' | C2' | 30.7° | 23.8° |
| O4' | C4' | C3' | H3' | 151.9° | 94.9° |
| C4' | O4' | C1' | C2' | 14.6° | 40.4° |
| C4' | O4' | C1' | N1 | 151.1° | 159.3° |
| C4' | O4' | C1' | H1' | 90.1° | 78.4° |
| C3' | C4' | O4' | C1' | 26.1° | 40.3° |
| C4' | C3' | O3' | C2' | 118.1° | 114.9° |
| C4' | C3' | O3' | H3' | 120.7° | 122.6° |
| C4' | C3' | C2' | H3' | 120.7° | 118.7° |
| C4' | C3' | O3' | H1 | 180.0° | 178.2° |
| C4' | C3' | C2' | C1' | 19.8° | 0.1° |
| C4' | C3' | C2' | H2' | 145.1° | 118.5° |
| C4' | C3' | C2' | H2'' | 105.5° | 118.7° |
| H4' | C4' | O4' | C1' | 145.0° | 78.3° |
| H4' | C4' | C3' | O3' | 32.0° | 23.8° |
| H4' | C4' | C3' | C2' | 151.7° | 94.9° |
| H4' | C4' | C3' | H3' | 87.1° | 146.4° |
| O4' | C1' | C2' | C3' | 3.9° | 24.0° |
| O4' | C1' | C2' | N1 | 155.9° | 118.9° |
| O4' | C1' | C2' | H1' | 145.1° | 118.8° |
| O4' | C1' | C2' | H2' | 129.2° | 94.6° |
| O4' | C1' | C2' | H2'' | 121.4° | 142.6° |
| O4' | C1' | N1 | H1' | 153.0° | 122.3° |
| O4' | C1' | N1 | C2 | 123.8° | 50.1° |
| O4' | C1' | N1 | C6 | 90.7° | 129.6° |
| O3' | C3' | C2' | H3' | 119.2° | 122.6° |
| O3' | C3' | C2' | C1' | 100.4° | 118.7° |
| O3' | C3' | C2' | H2' | 24.9° | 122.7° |
| O3' | C3' | C2' | H2'' | 134.4° | 0.0° |
| C2' | C3' | O3' | H1 | 61.9° | 63.3° |
| C3' | C2' | C1' | H2' | 125.3° | 118.6° |
| C3' | C2' | C1' | H2'' | 125.3° | 118.6° |
| C3' | C2' | H2' | H2'' | 122.0° | 122.7° |
| C3' | C2' | C1' | N1 | 159.8° | 142.9° |
| C3' | C2' | C1' | H1' | 141.2° | 94.8° |
| H3' | C3' | O3' | H1 | 59.2° | 59.3° |
| H3' | C3' | C2' | C1' | 140.5° | 118.8° |
| H3' | C3' | C2' | H2' | 94.2° | 0.2° |
| H3' | C3' | C2' | H2'' | 15.2° | 122.6° |
| C1' | C2' | H2' | H2'' | 122.0° | 122.7° |
| C2' | C1' | N1 | H1' | 48.7° | 122.2° |
| C2' | C1' | N1 | C2 | 78.0° | 65.3° |
| C2' | C1' | N1 | C6 | 67.6° | 115.0° |
| H2' | C2' | C1' | N1 | 74.9° | 24.3° |
| H2' | C2' | C1' | H1' | 15.9° | 146.6° |
| H2'' | C2' | C1' | N1 | 34.5° | 98.4° |
| H2'' | C2' | C1' | H1' | 93.6° | 23.8° |
| C1' | N1 | C2 | C6 | 138.9° | 179.7° |
| C1' | N1 | C2 | O2 | 5.7° | 0.3° |
| C1' | N1 | C2 | N3 | 166.8° | 179.7° |
| C1' | N1 | C6 | C5 | 168.0° | 180.0° |
| C1' | N1 | C6 | H6 | 12.0° | 0.1° |
| H1' | C1' | N1 | C2 | 29.2° | 172.5° |
| H1' | C1' | N1 | C6 | 116.3° | 7.2° |
| N1 | C2 | O2 | N3 | 172.0° | 179.5° |
| N1 | C2 | N3 | C4 | 19.0° | 0.6° |
| N1 | C2 | N3 | HN3 | 161.0° | 179.7° |
| C2 | N1 | C6 | C5 | 25.2° | 0.4° |
| C2 | N1 | C6 | H6 | 154.8° | 179.7° |
| C6 | N1 | C2 | O2 | 144.7° | 179.9° |
| C6 | N1 | C2 | N3 | 27.9° | 0.6° |
| N1 | C6 | C5 | C4 | 11.9° | 0.1° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| N1 | C6 | C5 | H5 | 168.1° | 180.0° |
| O2 | C2 | N3 | C4 | 153.7° | 180.0° |
| O2 | C2 | N3 | HN3 | 26.3° | 0.3° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.7° |
| C2 | N3 | C4 | O4 | 111.6° | 121.7° |
| C2 | N3 | C4 | C5 | 8.2° | 0.3° |
| C2 | N3 | C4 | H4 | 129.0° | 122.2° |
| N3 | C4 | O4 | C5 | 122.2° | 127.5° |
| N3 | C4 | O4 | H4 | 116.8° | 116.2° |
| N3 | C4 | C5 | H4 | 116.9° | 121.9° |
| N3 | C4 | O4 | HO4 | 180.0° | 52.5° |
| N3 | C4 | C5 | C6 | 3.9° | 0.1° |
| N3 | C4 | C5 | H5 | 176.1° | 180.0° |
| HN3 | N3 | C4 | O4 | 68.4° | 58.1° |
| HN3 | N3 | C4 | C5 | 171.8° | 180.0° |
| HN3 | N3 | C4 | H4 | 51.0° | 58.1° |
| O4 | C4 | C5 | H4 | 119.6° | 116.2° |
| O4 | C4 | C5 | C6 | 119.6° | 121.9° |
| O4 | C4 | C5 | H5 | 60.3° | 58.1° |
| C5 | C4 | O4 | HO4 | 57.7° | 180.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.9° |
| C4 | C5 | C6 | H6 | 168.1° | 180.0° |
| H4 | C4 | O4 | HO4 | 63.2° | 63.8° |
| H4 | C4 | C5 | C6 | 120.8° | 121.9° |
| H4 | C4 | C5 | H5 | 59.2° | 58.1° |
| H5 | C5 | C6 | H6 | 11.9° | 0.1° |
