Obsolete: DDB

DDB was replaced with MDA on

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5	C1	sing	1.42Å	1.40Å
O5	C5	sing	1.43Å	1.40Å
O1	C1	sing	1.43Å	1.41Å
O1	HO1	sing	0.97Å	0.95Å
C1	C2	sing	1.53Å	1.52Å
C1	H1	sing	1.09Å	1.08Å
C2	C3	sing	1.53Å	1.52Å
C2	H21	sing	1.09Å	1.09Å
C2	H22	sing	1.09Å	1.09Å
C3	O3	sing	1.43Å	1.41Å
C3	C3M	sing	1.53Å	1.51Å
C3	C4	sing	1.53Å	1.53Å
O3	HO3	sing	0.97Å	0.94Å
C3M	H3M1	sing	1.09Å	1.12Å
C3M	H3M2	sing	1.09Å	1.11Å
C3M	H3M3	sing	1.09Å	1.11Å
C4	O4	sing	1.43Å	1.42Å
C4	C5	sing	1.53Å	1.52Å
C4	H4	sing	1.09Å	1.08Å
O4	HO4	sing	0.97Å	0.76Å
C5	C6	sing	1.53Å	1.53Å
C5	H5	sing	1.09Å	1.10Å
C6	H61	sing	1.09Å	1.11Å
C6	H62	sing	1.09Å	1.11Å
C6	H63	sing	1.09Å	1.11Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	O5	C5	112.0°	107.6°
O5	C1	O1	109.6°	109.5°
O5	C1	C2	112.0°	109.8°
O5	C1	H1	105.0°	109.5°
O5	C5	C4	105.2°	109.8°
O5	C5	C6	108.7°	109.4°
O5	C5	H5	108.4°	109.4°
C1	O1	HO1	109.6°	106.8°
O1	C1	C2	107.4°	109.4°
O1	C1	H1	115.4°	109.4°
C2	C1	H1	107.6°	109.4°
C1	C2	C3	111.8°	109.0°
C1	C2	H21	110.3°	109.5°
C1	C2	H22	106.2°	109.5°
C3	C2	H21	112.4°	109.6°
C3	C2	H22	110.7°	109.6°
C2	C3	O3	109.5°	109.6°
C2	C3	C3M	107.8°	109.6°
C2	C3	C4	107.7°	108.7°
H21	C2	H22	105.0°	109.6°
O3	C3	C3M	106.6°	109.6°
O3	C3	C4	111.8°	109.8°
C3	O3	HO3	109.6°	106.8°
C3M	C3	C4	113.3°	109.6°
C3	C3M	H3M1	112.8°	109.5°
C3	C3M	H3M2	107.8°	109.5°
C3	C3M	H3M3	112.8°	109.4°
C3	C4	O4	114.0°	109.6°
C3	C4	C5	110.8°	109.0°
C3	C4	H4	105.8°	109.5°
H3M1	C3M	H3M2	112.8°	109.5°
H3M1	C3M	H3M3	97.6°	109.5°
H3M2	C3M	H3M3	112.8°	109.5°
O4	C4	C5	113.3°	109.6°
O4	C4	H4	109.1°	109.5°
C4	O4	HO4	121.1°	106.8°
C5	C4	H4	102.9°	109.6°
C4	C5	C6	116.0°	109.5°
C4	C5	H5	108.6°	109.5°
C6	C5	H5	109.7°	109.4°
C5	C6	H61	112.5°	109.5°
C5	C6	H62	108.7°	109.5°
C5	C6	H63	112.5°	109.5°
H61	C6	H62	112.4°	109.5°
H61	C6	H63	98.0°	109.4°
H62	C6	H63	112.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5	C1	O1	C2	121.9°	120.3°
O5	C1	O1	H1	118.2°	119.9°
O5	C1	O1	HO1	180.0°	60.0°
O5	C1	C2	H1	114.9°	120.1°
O5	C1	C2	C3	50.5°	61.2°
O5	C1	C2	H21	176.4°	178.9°
O5	C1	C2	H22	70.3°	58.6°
C1	O5	C5	C4	68.1°	67.6°
C1	O5	C5	C6	167.1°	172.3°
C1	O5	C5	H5	47.9°	52.5°
C5	O5	C1	O1	178.6°	172.4°
C5	O5	C1	C2	62.3°	67.5°
C5	O5	C1	H1	54.2°	52.5°
O5	C5	C4	C3	65.3°	61.3°
O5	C5	C4	O4	165.0°	178.8°
O5	C5	C4	C6	120.1°	120.1°
O5	C5	C4	H5	115.8°	120.0°
O5	C5	C4	H4	47.3°	58.6°
O5	C5	C6	H5	118.3°	119.8°
O5	C5	C6	H61	54.8°	59.8°
O5	C5	C6	H62	180.0°	179.8°
O5	C5	C6	H63	54.7°	60.2°
O1	C1	C2	H1	124.7°	119.8°
O1	C1	C2	C3	170.8°	178.6°
O1	C1	C2	H21	63.3°	58.8°
O1	C1	C2	H22	50.0°	61.5°
HO1	O1	C1	C2	58.1°	179.7°
HO1	O1	C1	H1	61.8°	59.9°
C1	C2	C3	H21	124.7°	119.8°
C1	C2	C3	H22	118.2°	119.8°
C1	C2	H21	H22	114.1°	120.2°
C1	C2	C3	O3	74.8°	66.3°
C1	C2	C3	C3M	169.7°	173.5°
C1	C2	C3	C4	47.0°	53.7°
H1	C1	C2	C3	64.4°	58.9°
H1	C1	C2	H21	61.5°	61.0°
H1	C1	C2	H22	174.8°	178.8°
C3	C2	H21	H22	120.4°	120.3°
C2	C3	O3	C3M	116.4°	120.3°
C2	C3	O3	C4	119.3°	119.3°
C2	C3	C3M	C4	119.1°	119.1°
C2	C3	O3	HO3	167.6°	60.0°
C2	C3	C3M	H3M1	54.7°	60.0°
C2	C3	C3M	H3M2	180.0°	60.0°
C2	C3	C3M	H3M3	54.7°	180.0°
C2	C3	C4	O4	175.0°	173.7°
C2	C3	C4	C5	55.8°	53.8°
C2	C3	C4	H4	55.1°	66.1°
H21	C2	C3	O3	50.0°	53.6°
H21	C2	C3	C3M	65.6°	66.7°
H21	C2	C3	C4	171.8°	173.6°
H22	C2	C3	O3	167.1°	173.9°
H22	C2	C3	C3M	51.5°	53.7°
H22	C2	C3	C4	71.1°	66.1°
O3	C3	C3M	C4	123.4°	120.6°
O3	C3	C3M	H3M1	172.2°	60.3°
O3	C3	C3M	H3M2	62.5°	179.7°
O3	C3	C3M	H3M3	62.7°	59.7°
O3	C3	C4	O4	64.7°	53.9°
O3	C3	C4	C5	64.6°	66.0°
O3	C3	C4	H4	175.4°	174.0°
C3M	C3	O3	HO3	76.1°	60.3°
C3	C3M	H3M1	H3M2	122.5°	120.0°
C3	C3M	H3M1	H3M3	118.8°	120.0°
C3	C3M	H3M2	H3M3	125.3°	120.0°
C3M	C3	C4	O4	55.8°	66.6°
C3M	C3	C4	C5	175.0°	173.5°
C3M	C3	C4	H4	64.1°	53.6°
C4	C3	O3	HO3	48.3°	179.3°
C4	C3	C3M	H3M1	64.4°	179.1°
C4	C3	C3M	H3M2	60.9°	59.1°
C4	C3	C3M	H3M3	173.9°	60.9°
C3	C4	O4	C5	128.0°	119.6°
C3	C4	O4	H4	118.0°	120.2°
C3	C4	C5	H4	112.7°	119.9°
C3	C4	O4	HO4	50.1°	179.9°
C3	C4	C5	C6	174.5°	178.6°
C3	C4	C5	H5	50.5°	58.7°
H3M1	C3M	H3M2	H3M3	109.5°	120.0°
O4	C4	C5	H4	117.7°	120.2°
O4	C4	C5	C6	44.9°	58.7°
O4	C4	C5	H5	79.1°	61.2°
C5	C4	O4	HO4	77.9°	60.3°
C4	C5	C6	H5	123.5°	119.9°
C4	C5	C6	H61	173.0°	179.9°
C4	C5	C6	H62	61.8°	59.8°
C4	C5	C6	H63	63.5°	60.1°
H4	C4	O4	HO4	168.1°	59.9°
H4	C4	C5	C6	72.8°	61.5°
H4	C4	C5	H5	163.2°	178.6°
C5	C6	H61	H62	123.2°	120.1°
C5	C6	H61	H63	118.4°	120.0°
C5	C6	H62	H63	125.3°	120.0°
H5	C5	C6	H61	63.5°	60.0°
H5	C5	C6	H62	61.7°	60.1°
H5	C5	C6	H63	173.0°	179.9°
H61	C6	H62	H63	109.5°	119.9°

Definition date:	1999-07-09
Last modified:	2008-10-14
Release status:	OBS
Processing site:	RCSB
Replaced by:	MDA
Derived from:	1BP8