DC
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | sing | 1.61Å | 1.63Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
P | OP1 | doub | 1.48Å | 1.46Å | |
P | OP2 | sing | 1.61Å | 1.43Å | |
P | O5' | sing | 1.61Å | 1.62Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
O5' | C5' | sing | 1.43Å | 1.41Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C5' | H5' | sing | 1.09Å | 1.11Å | |
C5' | H5'' | sing | 1.09Å | 1.12Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C3' | sing | 1.55Å | 1.54Å | |
C4' | H4' | sing | 1.09Å | 1.12Å | |
O4' | C1' | sing | 1.44Å | 1.44Å | |
C3' | O3' | sing | 1.43Å | 1.45Å | |
C3' | C2' | sing | 1.55Å | 1.51Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C2' | C1' | sing | 1.54Å | 1.55Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
C2' | H2'' | sing | 1.09Å | 1.11Å | |
C1' | N1 | sing | 1.46Å | 1.46Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
N1 | C2 | sing | 1.34Å | 1.39Å | |
N1 | C6 | sing | 1.36Å | 1.38Å | |
C2 | O2 | doub | 1.22Å | 1.24Å | |
C2 | N3 | sing | 1.33Å | 1.35Å | |
N3 | C4 | doub | 1.33Å | 1.35Å | |
C4 | N4 | sing | 1.38Å | 1.32Å | |
C4 | C5 | sing | 1.41Å | 1.42Å | |
N4 | H41 | sing | 0.97Å | 1.02Å | |
N4 | H42 | sing | 0.97Å | 1.02Å | |
C5 | C6 | doub | 1.35Å | 1.32Å | |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | OP3 | HOP3 | 109.4° | 106.8° |
OP3 | P | OP1 | 109.4° | 109.4° |
OP3 | P | OP2 | 110.8° | 109.5° |
OP3 | P | O5' | 102.6° | 109.5° |
OP1 | P | OP2 | 121.1° | 109.5° |
OP1 | P | O5' | 108.9° | 109.5° |
OP2 | P | O5' | 102.2° | 109.5° |
P | OP2 | HOP2 | 121.1° | 106.8° |
P | O5' | C5' | 119.2° | 106.8° |
O5' | C5' | C4' | 107.1° | 109.5° |
O5' | C5' | H5' | 113.1° | 109.5° |
O5' | C5' | H5'' | 113.1° | 109.6° |
C4' | C5' | H5' | 113.1° | 109.4° |
C4' | C5' | H5'' | 113.1° | 109.4° |
C5' | C4' | O4' | 109.5° | 110.8° |
C5' | C4' | C3' | 115.9° | 110.7° |
C5' | C4' | H4' | 103.3° | 110.5° |
H5' | C5' | H5'' | 97.3° | 109.4° |
O4' | C4' | C3' | 103.3° | 103.6° |
O4' | C4' | H4' | 115.8° | 110.5° |
C4' | O4' | C1' | 103.5° | 106.9° |
C3' | C4' | H4' | 109.5° | 110.6° |
C4' | C3' | O3' | 104.9° | 110.9° |
C4' | C3' | C2' | 104.6° | 102.1° |
C4' | C3' | H3' | 117.0° | 110.9° |
O4' | C1' | C2' | 105.0° | 107.4° |
O4' | C1' | N1 | 107.4° | 109.9° |
O4' | C1' | H1' | 115.6° | 109.9° |
O3' | C3' | C2' | 114.1° | 110.9° |
O3' | C3' | H3' | 108.1° | 110.8° |
C3' | O3' | HO3' | 104.9° | 106.7° |
C2' | C3' | H3' | 108.3° | 110.9° |
C3' | C2' | C1' | 103.4° | 104.2° |
C3' | C2' | H2' | 114.5° | 110.5° |
C3' | C2' | H2'' | 114.5° | 110.5° |
C1' | C2' | H2' | 114.5° | 110.5° |
C1' | C2' | H2'' | 114.5° | 110.4° |
C2' | C1' | N1 | 114.9° | 109.9° |
C2' | C1' | H1' | 108.3° | 109.8° |
H2' | C2' | H2'' | 96.0° | 110.5° |
N1 | C1' | H1' | 105.9° | 109.9° |
C1' | N1 | C2 | 119.4° | 119.8° |
C1' | N1 | C6 | 119.7° | 119.8° |
C2 | N1 | C6 | 120.8° | 120.3° |
N1 | C2 | O2 | 119.4° | 119.5° |
N1 | C2 | N3 | 118.8° | 121.1° |
N1 | C6 | C5 | 120.0° | 119.3° |
N1 | C6 | H6 | 122.2° | 120.4° |
O2 | C2 | N3 | 121.8° | 119.5° |
C2 | N3 | C4 | 120.3° | 120.7° |
N3 | C4 | N4 | 116.9° | 120.2° |
N3 | C4 | C5 | 120.7° | 119.6° |
N4 | C4 | C5 | 122.4° | 120.2° |
C4 | N4 | H41 | 122.4° | 120.0° |
C4 | N4 | H42 | 107.6° | 120.0° |
C4 | C5 | C6 | 119.1° | 119.0° |
C4 | C5 | H5 | 123.9° | 120.5° |
H41 | N4 | H42 | 107.6° | 120.0° |
C6 | C5 | H5 | 116.9° | 120.5° |
C5 | C6 | H6 | 117.8° | 120.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | OP2 | 130.7° | 120.0° |
OP3 | P | OP1 | O5' | 111.4° | 119.9° |
OP3 | P | OP2 | O5' | 108.7° | 120.0° |
OP3 | P | OP2 | HOP2 | 49.9° | 60.0° |
OP3 | P | O5' | C5' | 69.7° | 180.0° |
HOP3 | OP3 | P | OP1 | 180.0° | 60.0° |
HOP3 | OP3 | P | OP2 | 44.0° | 60.0° |
HOP3 | OP3 | P | O5' | 64.5° | 180.0° |
OP1 | P | OP2 | O5' | 121.2° | 120.0° |
OP1 | P | OP2 | HOP2 | 180.0° | 180.0° |
OP1 | P | O5' | C5' | 46.1° | 60.0° |
OP2 | P | O5' | C5' | 175.4° | 60.0° |
O5' | P | OP2 | HOP2 | 58.8° | 60.0° |
P | O5' | C5' | C4' | 167.5° | 180.0° |
P | O5' | C5' | H5' | 67.2° | 60.0° |
P | O5' | C5' | H5'' | 42.2° | 60.0° |
O5' | C5' | C4' | H5' | 125.3° | 120.0° |
O5' | C5' | C4' | H5'' | 125.3° | 120.1° |
O5' | C5' | H5' | H5'' | 119.0° | 120.1° |
O5' | C5' | C4' | O4' | 66.5° | 65.7° |
O5' | C5' | C4' | C3' | 49.8° | 180.0° |
O5' | C5' | C4' | H4' | 169.6° | 57.1° |
C4' | C5' | H5' | H5'' | 119.0° | 119.9° |
C5' | C4' | O4' | C3' | 124.0° | 118.7° |
C5' | C4' | O4' | H4' | 116.3° | 122.9° |
C5' | C4' | C3' | H4' | 116.3° | 122.9° |
C5' | C4' | O4' | C1' | 168.6° | 158.6° |
C5' | C4' | C3' | O3' | 90.5° | 86.1° |
C5' | C4' | C3' | C2' | 149.1° | 155.7° |
C5' | C4' | C3' | H3' | 29.3° | 37.4° |
H5' | C5' | C4' | O4' | 168.2° | 174.3° |
H5' | C5' | C4' | C3' | 75.5° | 60.0° |
H5' | C5' | C4' | H4' | 44.3° | 62.9° |
H5'' | C5' | C4' | O4' | 58.8° | 54.4° |
H5'' | C5' | C4' | C3' | 175.1° | 59.9° |
H5'' | C5' | C4' | H4' | 65.1° | 177.2° |
O4' | C4' | C3' | H4' | 124.0° | 118.4° |
O4' | C4' | C3' | O3' | 149.8° | 155.2° |
O4' | C4' | C3' | C2' | 29.4° | 37.0° |
O4' | C4' | C3' | H3' | 90.4° | 81.3° |
C4' | O4' | C1' | C2' | 42.3° | 26.3° |
C4' | O4' | C1' | N1 | 165.0° | 145.8° |
C4' | O4' | C1' | H1' | 77.0° | 93.1° |
C3' | C4' | O4' | C1' | 44.5° | 39.9° |
C4' | C3' | O3' | C2' | 113.9° | 112.7° |
C4' | C3' | O3' | H3' | 125.5° | 123.6° |
C4' | C3' | C2' | H3' | 125.5° | 118.2° |
C4' | C3' | O3' | HO3' | 180.0° | 174.2° |
C4' | C3' | C2' | C1' | 4.2° | 20.9° |
C4' | C3' | C2' | H2' | 129.4° | 97.8° |
C4' | C3' | C2' | H2'' | 121.1° | 139.5° |
H4' | C4' | O4' | C1' | 75.2° | 78.6° |
H4' | C4' | C3' | O3' | 25.8° | 36.8° |
H4' | C4' | C3' | C2' | 94.6° | 81.4° |
H4' | C4' | C3' | H3' | 145.6° | 160.3° |
O4' | C1' | C2' | C3' | 22.7° | 1.9° |
O4' | C1' | C2' | N1 | 117.8° | 119.5° |
O4' | C1' | C2' | H1' | 124.1° | 119.5° |
O4' | C1' | C2' | H2' | 102.6° | 120.6° |
O4' | C1' | C2' | H2'' | 147.9° | 116.7° |
O4' | C1' | N1 | H1' | 124.1° | 121.1° |
O4' | C1' | N1 | C2 | 127.2° | 58.3° |
O4' | C1' | N1 | C6 | 49.1° | 121.7° |
O3' | C3' | C2' | H3' | 120.4° | 123.5° |
O3' | C3' | C2' | C1' | 118.2° | 139.1° |
O3' | C3' | C2' | H2' | 116.5° | 20.4° |
O3' | C3' | C2' | H2'' | 7.0° | 102.3° |
C2' | C3' | O3' | HO3' | 66.1° | 61.5° |
C3' | C2' | C1' | H2' | 125.3° | 118.7° |
C3' | C2' | C1' | H2'' | 125.3° | 118.7° |
C3' | C2' | H2' | H2'' | 120.4° | 122.7° |
C3' | C2' | C1' | N1 | 140.4° | 121.5° |
C3' | C2' | C1' | H1' | 101.4° | 117.5° |
H3' | C3' | O3' | HO3' | 54.5° | 62.2° |
H3' | C3' | C2' | C1' | 121.3° | 97.3° |
H3' | C3' | C2' | H2' | 3.9° | 143.9° |
H3' | C3' | C2' | H2'' | 113.4° | 21.3° |
C1' | C2' | H2' | H2'' | 120.4° | 122.6° |
C2' | C1' | N1 | H1' | 119.5° | 121.0° |
C2' | C1' | N1 | C2 | 116.3° | 59.7° |
C2' | C1' | N1 | C6 | 67.3° | 120.3° |
H2' | C2' | C1' | N1 | 15.2° | 119.8° |
H2' | C2' | C1' | H1' | 133.3° | 1.2° |
H2'' | C2' | C1' | N1 | 94.3° | 2.8° |
H2'' | C2' | C1' | H1' | 23.8° | 123.8° |
C1' | N1 | C2 | C6 | 176.3° | 180.0° |
C1' | N1 | C2 | O2 | 6.6° | 0.0° |
C1' | N1 | C2 | N3 | 170.3° | 180.0° |
C1' | N1 | C6 | C5 | 173.3° | 179.8° |
C1' | N1 | C6 | H6 | 6.6° | 0.1° |
H1' | C1' | N1 | C2 | 3.1° | 179.3° |
H1' | C1' | N1 | C6 | 173.2° | 0.7° |
N1 | C2 | O2 | N3 | 176.8° | 180.0° |
N1 | C2 | N3 | C4 | 4.1° | 0.0° |
C2 | N1 | C6 | C5 | 3.0° | 0.3° |
C2 | N1 | C6 | H6 | 177.1° | 179.9° |
C6 | N1 | C2 | O2 | 177.0° | 180.0° |
C6 | N1 | C2 | N3 | 6.0° | 0.0° |
N1 | C6 | C5 | C4 | 1.8° | 0.4° |
N1 | C6 | C5 | H6 | 180.0° | 179.8° |
N1 | C6 | C5 | H5 | 178.2° | 180.0° |
O2 | C2 | N3 | C4 | 179.1° | 180.0° |
C2 | N3 | C4 | N4 | 179.0° | 180.0° |
C2 | N3 | C4 | C5 | 0.7° | 0.2° |
N3 | C4 | N4 | C5 | 179.7° | 179.8° |
N3 | C4 | N4 | H41 | 0.3° | 0.0° |
N3 | C4 | N4 | H42 | 125.6° | 179.7° |
N3 | C4 | C5 | C6 | 3.8° | 0.4° |
N3 | C4 | C5 | H5 | 176.3° | 180.0° |
C4 | N4 | H41 | H42 | 125.3° | 179.7° |
N4 | C4 | C5 | C6 | 175.9° | 179.8° |
N4 | C4 | C5 | H5 | 4.0° | 0.2° |
C5 | C4 | N4 | H41 | 180.0° | 179.8° |
C5 | C4 | N4 | H42 | 54.7° | 0.5° |
C4 | C5 | C6 | H5 | 180.0° | 179.6° |
C4 | C5 | C6 | H6 | 178.1° | 179.7° |
H5 | C5 | C6 | H6 | 1.8° | 0.2° |