DBY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.47Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| CB | CG | sing | 1.51Å | 1.51Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CB | HB3 | sing | 1.09Å | 1.11Å | |
| CG | CD1 | doub | 1.38Å | 1.39Å | Aromatic |
| CG | CD2 | sing | 1.38Å | 1.38Å | Aromatic |
| CD1 | CE1 | sing | 1.38Å | 1.39Å | Aromatic |
| CD1 | HD1 | sing | 1.08Å | 1.10Å | |
| CE1 | CZ | doub | 1.39Å | 1.36Å | Aromatic |
| CE1 | BR1 | sing | 1.89Å | 1.84Å | |
| CD2 | CE2 | doub | 1.38Å | 1.38Å | Aromatic |
| CD2 | HD2 | sing | 1.08Å | 1.10Å | |
| CE2 | CZ | sing | 1.39Å | 1.37Å | Aromatic |
| CE2 | BR2 | sing | 1.89Å | 1.83Å | |
| CZ | OH | sing | 1.36Å | 1.37Å | |
| OH | HH | sing | 0.97Å | 0.95Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.4° | 106.6° |
| CA | N | H2 | 112.2° | 106.7° |
| N | CA | C | 109.4° | 109.5° |
| N | CA | CB | 110.0° | 109.5° |
| N | CA | HA | 108.4° | 109.5° |
| H | N | H2 | 112.3° | 106.7° |
| C | CA | CB | 106.9° | 109.5° |
| C | CA | HA | 111.4° | 109.4° |
| CA | C | O | 119.7° | 120.0° |
| CA | C | OXT | 117.5° | 120.0° |
| CB | CA | HA | 110.8° | 109.5° |
| CA | CB | CG | 115.8° | 109.5° |
| CA | CB | HB2 | 109.9° | 109.5° |
| CA | CB | HB3 | 109.9° | 109.5° |
| O | C | OXT | 122.7° | 119.9° |
| C | OXT | HXT | 117.6° | 120.0° |
| CG | CB | HB2 | 109.9° | 109.5° |
| CG | CB | HB3 | 109.9° | 109.4° |
| CB | CG | CD1 | 121.1° | 119.9° |
| CB | CG | CD2 | 120.9° | 119.9° |
| HB2 | CB | HB3 | 100.3° | 109.5° |
| CD1 | CG | CD2 | 117.9° | 120.1° |
| CG | CD1 | CE1 | 120.7° | 120.1° |
| CG | CD1 | HD1 | 119.8° | 120.0° |
| CG | CD2 | CE2 | 120.8° | 120.0° |
| CG | CD2 | HD2 | 119.9° | 120.0° |
| CE1 | CD1 | HD1 | 119.4° | 119.9° |
| CD1 | CE1 | CZ | 120.0° | 119.9° |
| CD1 | CE1 | BR1 | 120.6° | 120.1° |
| CZ | CE1 | BR1 | 119.3° | 120.0° |
| CE1 | CZ | CE2 | 120.3° | 119.9° |
| CE1 | CZ | OH | 118.6° | 120.1° |
| CE2 | CD2 | HD2 | 119.3° | 120.0° |
| CD2 | CE2 | CZ | 120.3° | 120.0° |
| CD2 | CE2 | BR2 | 119.7° | 120.0° |
| CZ | CE2 | BR2 | 120.0° | 120.0° |
| CE2 | CZ | OH | 121.2° | 120.1° |
| CZ | OH | HH | 118.6° | 106.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.3° | 113.7° |
| N | CA | C | CB | 119.0° | 120.0° |
| N | CA | C | HA | 119.8° | 120.0° |
| N | CA | CB | HA | 119.8° | 120.0° |
| N | CA | C | O | 39.4° | 30.0° |
| N | CA | C | OXT | 142.3° | 149.9° |
| N | CA | CB | CG | 75.8° | 60.0° |
| N | CA | CB | HB2 | 49.4° | 60.1° |
| N | CA | CB | HB3 | 159.0° | 179.9° |
| H | N | CA | C | 180.0° | 60.0° |
| H | N | CA | CB | 62.9° | 60.0° |
| H | N | CA | HA | 58.3° | 180.0° |
| H2 | N | CA | C | 54.7° | 173.8° |
| H2 | N | CA | CB | 62.4° | 53.7° |
| H2 | N | CA | HA | 176.3° | 66.3° |
| C | CA | CB | HA | 121.6° | 119.9° |
| CA | C | O | OXT | 178.3° | 179.9° |
| C | CA | CB | CG | 165.5° | 180.0° |
| C | CA | CB | HB2 | 69.2° | 60.0° |
| C | CA | CB | HB3 | 40.3° | 60.0° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| CB | CA | C | O | 79.7° | 90.0° |
| CB | CA | C | OXT | 98.7° | 90.1° |
| CA | CB | CG | HB2 | 125.3° | 120.0° |
| CA | CB | CG | HB3 | 125.2° | 120.0° |
| CA | CB | HB2 | HB3 | 115.7° | 120.0° |
| CA | CB | CG | CD1 | 107.1° | 90.0° |
| CA | CB | CG | CD2 | 77.1° | 90.3° |
| HA | CA | C | O | 159.2° | 150.0° |
| HA | CA | C | OXT | 22.5° | 29.9° |
| HA | CA | CB | CG | 44.0° | 60.0° |
| HA | CA | CB | HB2 | 169.2° | 179.9° |
| HA | CA | CB | HB3 | 81.2° | 59.9° |
| O | C | OXT | HXT | 1.7° | 0.1° |
| CG | CB | HB2 | HB3 | 115.7° | 119.9° |
| CB | CG | CD1 | CD2 | 175.9° | 179.7° |
| CB | CG | CD1 | CE1 | 175.4° | 180.0° |
| CB | CG | CD1 | HD1 | 4.6° | 0.1° |
| CB | CG | CD2 | CE2 | 175.1° | 179.7° |
| CB | CG | CD2 | HD2 | 5.0° | 0.3° |
| HB2 | CB | CG | CD1 | 18.2° | 30.0° |
| HB2 | CB | CG | CD2 | 157.6° | 149.7° |
| HB3 | CB | CG | CD1 | 127.7° | 150.0° |
| HB3 | CB | CG | CD2 | 48.1° | 29.7° |
| CG | CD1 | CE1 | HD1 | 180.0° | 180.0° |
| CG | CD1 | CE1 | CZ | 0.4° | 0.0° |
| CG | CD1 | CE1 | BR1 | 177.5° | 180.0° |
| CD1 | CG | CD2 | CE2 | 0.9° | 0.6° |
| CD1 | CG | CD2 | HD2 | 179.1° | 180.0° |
| CD2 | CG | CD1 | CE1 | 0.5° | 0.3° |
| CD2 | CG | CD1 | HD1 | 179.5° | 179.7° |
| CG | CD2 | CE2 | HD2 | 180.0° | 179.5° |
| CG | CD2 | CE2 | CZ | 0.4° | 0.6° |
| CG | CD2 | CE2 | BR2 | 179.5° | 179.8° |
| CD1 | CE1 | CZ | BR1 | 177.9° | 180.0° |
| CD1 | CE1 | CZ | CE2 | 0.9° | 0.0° |
| CD1 | CE1 | CZ | OH | 177.6° | 179.9° |
| HD1 | CD1 | CE1 | CZ | 179.7° | 180.0° |
| HD1 | CD1 | CE1 | BR1 | 2.4° | 0.0° |
| CE1 | CZ | CE2 | CD2 | 0.5° | 0.3° |
| CE1 | CZ | CE2 | OH | 178.4° | 179.9° |
| CE1 | CZ | CE2 | BR2 | 179.6° | 179.9° |
| CE1 | CZ | OH | HH | 180.0° | 89.9° |
| BR1 | CE1 | CZ | CE2 | 177.1° | 180.0° |
| BR1 | CE1 | CZ | OH | 4.5° | 0.1° |
| CD2 | CE2 | CZ | BR2 | 179.9° | 179.6° |
| CD2 | CE2 | CZ | OH | 177.9° | 179.6° |
| HD2 | CD2 | CE2 | CZ | 179.6° | 180.0° |
| HD2 | CD2 | CE2 | BR2 | 0.5° | 0.4° |
| CE2 | CZ | OH | HH | 1.6° | 90.0° |
| BR2 | CE2 | CZ | OH | 2.0° | 0.0° |
