Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DBS

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O4C4sing1.36Å1.35Å
O4HO4sing0.97Å0.95Å
C4C7doub1.38Å1.39ÅAromatic
C4C1sing1.39Å1.42ÅAromatic
C7C10sing1.39Å1.39ÅAromatic
C7HC7sing1.08Å1.10Å
C1O1sing1.36Å1.32Å
C1C16doub1.40Å1.41ÅAromatic
O1HO1sing0.97Å0.95Å
C16C13sing1.40Å1.41ÅAromatic
C16C19sing1.48Å1.49Å
C13C10doub1.38Å1.39ÅAromatic
C13HC13sing1.08Å1.10Å
C10HC10sing1.08Å1.10Å
C19O7doub1.22Å1.23Å
C19N1sing1.35Å1.36Å
N1C22sing1.46Å1.45Å
N1HN1sing0.97Å1.02Å
C22C28sing1.53Å1.50Å
C22C25sing1.51Å1.53Å
C22HC22sing1.09Å1.12Å
C28O13sing1.43Å1.45Å
C28H281sing1.09Å1.11Å
C28H282sing1.09Å1.12Å
O13HO13sing0.97Å0.95Å
C25O10doub1.34Å1.20Å
C25O15sing1.21Å1.34Å
O15HO15sing3.67Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C4O4HO4128.9°106.9°
O4C4C7129.0°120.0°
O4C4C1112.2°120.0°
C7C4C1118.9°120.0°
C4C7C10120.4°120.3°
C4C7HC7119.5°119.8°
C4C1O1114.3°120.1°
C4C1C16120.2°119.7°
C10C7HC7120.1°119.8°
C7C10C13121.8°120.3°
C7C10HC10119.3°119.8°
O1C1C16125.5°120.2°
C1O1HO1114.3°106.8°
C1C16C13119.9°119.7°
C1C16C19120.3°120.2°
C13C16C19119.8°120.1°
C16C13C10118.8°120.0°
C16C13HC13121.3°120.0°
C16C19O7120.4°119.9°
C16C19N1117.6°120.0°
C10C13HC13120.0°120.0°
C13C10HC10118.9°119.9°
O7C19N1122.0°120.0°
C19N1C22123.5°120.0°
C19N1HN1114.7°120.0°
C22N1HN1121.8°120.0°
N1C22C28111.5°109.5°
N1C22C25111.3°109.5°
N1C22HC22108.5°109.5°
C28C22C25114.0°109.5°
C28C22HC22105.5°109.5°
C22C28O13113.2°109.5°
C22C28H281110.9°109.5°
C22C28H282110.8°109.4°
C25C22HC22105.7°109.4°
C22C25O10122.1°120.0°
C22C25O15113.2°120.0°
O13C28H281110.8°109.5°
O13C28H282110.9°109.5°
C28O13HO13113.2°106.8°
H281C28H28299.5°109.5°
O10C25O15124.7°120.0°
C25O15HO15113.2°75.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O4C4C7C1179.1°179.7°
O4C4C7C10180.0°179.9°
O4C4C7HC70.0°0.1°
O4C4C1O10.2°0.3°
O4C4C1C16179.7°179.8°
HO4O4C4C7180.0°89.9°
HO4O4C4C10.9°89.8°
C4C7C10HC7180.0°180.0°
C7C4C1O1179.4°180.0°
C7C4C1C160.5°0.5°
C4C7C10C130.9°0.0°
C4C7C10HC10179.1°180.0°
C1C4C7C100.9°0.2°
C1C4C7HC7179.1°179.8°
C4C1O1C16179.9°179.5°
C4C1O1HO1180.0°90.0°
C4C1C16C130.1°0.5°
C4C1C16C19179.9°179.7°
C7C10C13C160.6°0.0°
C7C10C13HC10180.0°179.9°
C7C10C13HC13179.4°180.0°
HC7C7C10C13179.0°180.0°
HC7C7C10HC101.0°0.0°
O1C1C16C13179.8°180.0°
O1C1C16C190.2°0.2°
C16C1O1HO10.1°90.4°
C1C16C13C19179.9°179.8°
C1C16C13C100.1°0.2°
C1C16C13HC13179.8°179.8°
C1C16C19O7180.0°0.2°
C1C16C19N10.0°179.7°
C16C13C10HC13180.0°180.0°
C16C13C10HC10179.4°180.0°
C13C16C19O70.1°180.0°
C13C16C19N1179.9°0.1°
C19C16C13C10179.9°180.0°
C19C16C13HC130.1°0.0°
C16C19O7N1180.0°179.9°
C16C19N1C22179.0°180.0°
C16C19N1HN11.0°0.1°
HC13C13C10HC100.6°0.0°
O7C19N1C221.0°0.1°
O7C19N1HN1179.0°180.0°
C19N1C22HN1180.0°179.9°
C19N1C22C2890.2°85.1°
C19N1C22C25141.3°154.9°
C19N1C22HC2225.5°35.0°
N1C22C28C25127.0°120.0°
N1C22C28HC22117.5°120.0°
N1C22C25HC22117.5°120.0°
N1C22C28O13115.7°65.0°
N1C22C28H2819.6°55.0°
N1C22C28H282119.0°175.0°
N1C22C25O10146.0°180.0°
N1C22C25O1533.9°0.0°
HN1N1C22C2889.8°95.0°
HN1N1C22C2538.7°25.0°
HN1N1C22HC22154.5°145.0°
C28C22C25HC22115.3°120.0°
C22C28O13H281125.3°120.0°
C22C28O13H282125.2°120.0°
C22C28H281H282116.7°119.9°
C22C28O13HO13180.0°180.0°
C28C22C25O1086.9°60.0°
C28C22C25O1593.2°120.0°
C25C22C28O1311.3°55.0°
C25C22C28H281136.6°175.0°
C25C22C28H282113.9°65.0°
C22C25O10O15179.8°180.0°
C22C25O15HO15180.0°3.1°
HC22C22C28O13126.8°175.0°
HC22C22C28H281107.9°65.0°
HC22C22C28H2821.5°55.0°
HC22C22C25O1028.4°60.0°
HC22C22C25O15151.4°120.0°
O13C28H281H282116.7°120.1°
H281C28O13HO1354.7°60.0°
H282C28O13HO1354.8°60.0°
O10C25O15HO150.2°176.9°

224572

PDB entries from 2024-09-04

PDB statisticsPDBj update infoContact PDBjnumon