DBM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| O5' | H5' | sing | 0.97Å | 0.95Å | |
| C5' | C6' | sing | 1.53Å | 1.53Å | |
| C5' | C4' | sing | 1.53Å | 1.55Å | |
| C5' | H1 | sing | 1.09Å | 1.12Å | |
| C6' | H6'1 | sing | 1.09Å | 1.12Å | |
| C6' | H6'2 | sing | 1.09Å | 1.11Å | |
| C6' | H6'3 | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.44Å | 1.47Å | |
| C4' | C3' | sing | 1.54Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C1' | N9 | sing | 1.46Å | 1.49Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N9 | C8 | sing | 1.36Å | 1.38Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.39Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.31Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| N7 | C5 | sing | 1.35Å | 1.38Å | Aromatic |
| C5 | C4 | doub | 1.41Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.40Å | 1.46Å | Aromatic |
| C4 | N3 | sing | 1.33Å | 1.37Å | Aromatic |
| N3 | C2 | doub | 1.32Å | 1.35Å | Aromatic |
| C2 | N1 | sing | 1.32Å | 1.39Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.10Å | |
| N1 | C6 | doub | 1.32Å | 1.41Å | Aromatic |
| C6 | C7 | sing | 1.51Å | 1.53Å | |
| C7 | H71 | sing | 1.09Å | 1.12Å | |
| C7 | H72 | sing | 1.09Å | 1.11Å | |
| C7 | H73 | sing | 1.09Å | 1.11Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2' | C3' | sing | 1.55Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| O2' | H3 | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.44Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | H4 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5' | O5' | H5' | 109.5° | 106.8° |
| O5' | C5' | C6' | 109.6° | 109.5° |
| O5' | C5' | C4' | 110.8° | 109.5° |
| O5' | C5' | H1 | 110.9° | 109.4° |
| C6' | C5' | C4' | 115.5° | 109.5° |
| C6' | C5' | H1 | 105.5° | 109.5° |
| C5' | C6' | H6'1 | 109.6° | 109.5° |
| C5' | C6' | H6'2 | 112.2° | 109.5° |
| C5' | C6' | H6'3 | 112.2° | 109.5° |
| C4' | C5' | H1 | 104.2° | 109.5° |
| C5' | C4' | O4' | 112.9° | 109.9° |
| C5' | C4' | C3' | 115.0° | 109.9° |
| C5' | C4' | H4' | 101.8° | 109.8° |
| H6'1 | C6' | H6'2 | 112.1° | 109.4° |
| H6'1 | C6' | H6'3 | 112.1° | 109.5° |
| H6'2 | C6' | H6'3 | 98.3° | 109.5° |
| O4' | C4' | C3' | 105.5° | 107.4° |
| O4' | C4' | H4' | 112.0° | 109.9° |
| C4' | O4' | C1' | 110.3° | 107.0° |
| C3' | C4' | H4' | 109.7° | 109.9° |
| C4' | C3' | C2' | 103.0° | 104.0° |
| C4' | C3' | O3' | 110.2° | 110.8° |
| C4' | C3' | H3' | 113.2° | 110.5° |
| O4' | C1' | N9 | 110.2° | 110.6° |
| O4' | C1' | C2' | 106.3° | 103.5° |
| O4' | C1' | H1' | 114.1° | 110.6° |
| N9 | C1' | C2' | 117.0° | 110.8° |
| N9 | C1' | H1' | 102.6° | 110.6° |
| C1' | N9 | C8 | 127.5° | 126.3° |
| C1' | N9 | C4 | 127.1° | 126.3° |
| C2' | C1' | H1' | 106.8° | 110.6° |
| C1' | C2' | O2' | 111.2° | 110.9° |
| C1' | C2' | C3' | 103.3° | 102.1° |
| C1' | C2' | H2' | 113.9° | 110.9° |
| C8 | N9 | C4 | 105.4° | 107.4° |
| N9 | C8 | N7 | 113.8° | 110.1° |
| N9 | C8 | H8 | 125.5° | 124.9° |
| N9 | C4 | C5 | 105.4° | 106.0° |
| N9 | C4 | N3 | 126.4° | 135.0° |
| N7 | C8 | H8 | 120.7° | 125.0° |
| C8 | N7 | C5 | 104.5° | 109.5° |
| N7 | C5 | C4 | 110.8° | 107.0° |
| N7 | C5 | C6 | 131.3° | 134.8° |
| C4 | C5 | C6 | 118.0° | 118.2° |
| C5 | C4 | N3 | 128.2° | 119.0° |
| C5 | C6 | N1 | 112.7° | 118.6° |
| C5 | C6 | C7 | 124.3° | 120.7° |
| C4 | N3 | C2 | 113.4° | 120.4° |
| N3 | C2 | N1 | 123.0° | 122.4° |
| N3 | C2 | H2 | 117.0° | 118.8° |
| N1 | C2 | H2 | 120.0° | 118.8° |
| C2 | N1 | C6 | 124.7° | 121.3° |
| N1 | C6 | C7 | 123.0° | 120.7° |
| C6 | C7 | H71 | 124.3° | 109.5° |
| C6 | C7 | H72 | 107.0° | 109.5° |
| C6 | C7 | H73 | 107.0° | 109.5° |
| H71 | C7 | H72 | 106.9° | 109.4° |
| H71 | C7 | H73 | 106.9° | 109.5° |
| H72 | C7 | H73 | 102.7° | 109.5° |
| O2' | C2' | C3' | 113.6° | 110.9° |
| O2' | C2' | H2' | 103.7° | 110.8° |
| C2' | O2' | H3 | 111.2° | 106.8° |
| C3' | C2' | H2' | 111.5° | 110.9° |
| C2' | C3' | O3' | 109.3° | 110.5° |
| C2' | C3' | H3' | 113.8° | 110.5° |
| O3' | C3' | H3' | 107.3° | 110.4° |
| C3' | O3' | H4 | 110.1° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | C5' | C6' | C4' | 126.0° | 120.0° |
| O5' | C5' | C6' | H1 | 119.5° | 119.9° |
| O5' | C5' | C4' | H1 | 119.3° | 120.0° |
| O5' | C5' | C6' | H6'1 | 180.0° | 60.0° |
| O5' | C5' | C6' | H6'2 | 54.8° | 180.0° |
| O5' | C5' | C6' | H6'3 | 54.7° | 60.0° |
| O5' | C5' | C4' | O4' | 117.8° | 178.3° |
| O5' | C5' | C4' | C3' | 120.9° | 60.3° |
| O5' | C5' | C4' | H4' | 2.4° | 60.7° |
| H5' | O5' | C5' | C6' | 180.0° | 60.0° |
| H5' | O5' | C5' | C4' | 51.3° | 60.0° |
| H5' | O5' | C5' | H1 | 63.9° | 180.0° |
| C6' | C5' | C4' | H1 | 115.3° | 120.0° |
| C5' | C6' | H6'1 | H6'2 | 125.2° | 120.0° |
| C5' | C6' | H6'1 | H6'3 | 125.3° | 120.0° |
| C5' | C6' | H6'2 | H6'3 | 118.1° | 120.0° |
| C6' | C5' | C4' | O4' | 7.5° | 61.7° |
| C6' | C5' | C4' | C3' | 113.7° | 179.7° |
| C6' | C5' | C4' | H4' | 127.8° | 59.3° |
| C4' | C5' | C6' | H6'1 | 54.0° | 180.0° |
| C4' | C5' | C6' | H6'2 | 71.2° | 60.0° |
| C4' | C5' | C6' | H6'3 | 179.3° | 60.0° |
| C5' | C4' | O4' | C3' | 126.4° | 119.5° |
| C5' | C4' | O4' | H4' | 114.3° | 121.0° |
| C5' | C4' | C3' | H4' | 114.1° | 121.0° |
| C5' | C4' | O4' | C1' | 134.6° | 145.9° |
| C5' | C4' | C3' | C2' | 151.4° | 121.4° |
| C5' | C4' | C3' | O3' | 92.0° | 119.9° |
| C5' | C4' | C3' | H3' | 28.0° | 2.8° |
| H1 | C5' | C6' | H6'1 | 60.6° | 59.9° |
| H1 | C5' | C6' | H6'2 | 174.2° | 60.0° |
| H1 | C5' | C6' | H6'3 | 64.7° | 179.9° |
| H1 | C5' | C4' | O4' | 122.8° | 58.3° |
| H1 | C5' | C4' | C3' | 1.6° | 59.7° |
| H1 | C5' | C4' | H4' | 116.9° | 179.3° |
| H6'1 | C6' | H6'2 | H6'3 | 118.1° | 120.0° |
| O4' | C4' | C3' | H4' | 120.8° | 119.5° |
| C4' | O4' | C1' | N9 | 114.3° | 158.7° |
| C4' | O4' | C1' | C2' | 13.3° | 40.1° |
| C4' | O4' | C1' | H1' | 130.8° | 78.4° |
| O4' | C4' | C3' | C2' | 26.3° | 1.9° |
| O4' | C4' | C3' | O3' | 142.8° | 120.7° |
| O4' | C4' | C3' | H3' | 97.1° | 116.7° |
| C3' | C4' | O4' | C1' | 8.2° | 26.5° |
| C4' | C3' | C2' | C1' | 33.6° | 21.0° |
| C4' | C3' | C2' | O2' | 87.0° | 139.2° |
| C4' | C3' | C2' | O3' | 117.1° | 118.9° |
| C4' | C3' | C2' | H3' | 122.9° | 118.6° |
| C4' | C3' | C2' | H2' | 156.3° | 97.3° |
| C4' | C3' | O3' | H3' | 123.6° | 122.7° |
| C4' | C3' | O3' | H4 | 180.0° | 176.2° |
| H4' | C4' | O4' | C1' | 111.1° | 93.1° |
| H4' | C4' | C3' | C2' | 94.5° | 117.6° |
| H4' | C4' | C3' | O3' | 22.0° | 1.1° |
| H4' | C4' | C3' | H3' | 142.1° | 123.8° |
| O4' | C1' | N9 | C2' | 121.5° | 114.2° |
| O4' | C1' | N9 | H1' | 121.9° | 122.9° |
| O4' | C1' | C2' | H1' | 122.2° | 118.5° |
| O4' | C1' | N9 | C8 | 1.9° | 28.5° |
| O4' | C1' | N9 | C4 | 177.9° | 151.7° |
| O4' | C1' | C2' | O2' | 92.5° | 155.3° |
| O4' | C1' | C2' | C3' | 29.7° | 37.1° |
| O4' | C1' | C2' | H2' | 150.8° | 81.2° |
| N9 | C1' | C2' | H1' | 114.3° | 122.9° |
| C1' | N9 | C8 | C4 | 179.9° | 179.8° |
| C1' | N9 | C8 | N7 | 179.8° | 180.0° |
| C1' | N9 | C8 | H8 | 0.2° | 0.1° |
| C1' | N9 | C4 | C5 | 179.6° | 179.9° |
| C1' | N9 | C4 | N3 | 0.4° | 0.7° |
| N9 | C1' | C2' | O2' | 144.0° | 86.1° |
| N9 | C1' | C2' | C3' | 93.8° | 155.7° |
| N9 | C1' | C2' | H2' | 27.3° | 37.4° |
| C2' | C1' | N9 | C8 | 123.4° | 85.7° |
| C2' | C1' | N9 | C4 | 56.5° | 94.1° |
| C1' | C2' | O2' | C3' | 116.0° | 112.8° |
| C1' | C2' | O2' | H2' | 122.8° | 123.6° |
| C1' | C2' | C3' | H2' | 122.7° | 118.2° |
| C1' | C2' | O2' | H3 | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 150.7° | 98.0° |
| C1' | C2' | C3' | H3' | 89.3° | 139.5° |
| H1' | C1' | N9 | C8 | 120.0° | 151.4° |
| H1' | C1' | N9 | C4 | 60.1° | 28.8° |
| H1' | C1' | C2' | O2' | 29.7° | 36.8° |
| H1' | C1' | C2' | C3' | 151.9° | 81.4° |
| H1' | C1' | C2' | H2' | 87.0° | 160.3° |
| N9 | C8 | N7 | H8 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.8° | 0.1° |
| C8 | N9 | C4 | C5 | 0.3° | 0.3° |
| C8 | N9 | C4 | N3 | 179.5° | 179.5° |
| C4 | N9 | C8 | N7 | 0.3° | 0.1° |
| C4 | N9 | C8 | H8 | 179.7° | 179.8° |
| N9 | C4 | C5 | N7 | 0.8° | 0.4° |
| N9 | C4 | C5 | N3 | 179.2° | 179.3° |
| N9 | C4 | C5 | C6 | 178.9° | 179.8° |
| N9 | C4 | N3 | C2 | 178.9° | 179.6° |
| C8 | N7 | C5 | C4 | 1.0° | 0.3° |
| C8 | N7 | C5 | C6 | 178.7° | 180.0° |
| H8 | C8 | N7 | C5 | 179.2° | 180.0° |
| N7 | C5 | C4 | C6 | 179.7° | 179.8° |
| N7 | C5 | C4 | N3 | 180.0° | 179.7° |
| N7 | C5 | C6 | N1 | 179.8° | 180.0° |
| N7 | C5 | C6 | C7 | 0.0° | 0.0° |
| C5 | C4 | N3 | C2 | 0.1° | 0.5° |
| C4 | C5 | C6 | N1 | 0.2° | 0.2° |
| C4 | C5 | C6 | C7 | 179.6° | 179.7° |
| C6 | C5 | C4 | N3 | 0.3° | 0.5° |
| C5 | C6 | N1 | C2 | 0.1° | 0.1° |
| C5 | C6 | N1 | C7 | 179.8° | 180.0° |
| C5 | C6 | C7 | H71 | 180.0° | 90.1° |
| C5 | C6 | C7 | H72 | 54.7° | 150.0° |
| C5 | C6 | C7 | H73 | 54.8° | 30.0° |
| C4 | N3 | C2 | N1 | 0.1° | 0.2° |
| C4 | N3 | C2 | H2 | 179.9° | 179.8° |
| N3 | C2 | N1 | H2 | 180.0° | 180.0° |
| N3 | C2 | N1 | C6 | 0.2° | 0.1° |
| C2 | N1 | C6 | C7 | 179.8° | 180.0° |
| H2 | C2 | N1 | C6 | 179.8° | 180.0° |
| N1 | C6 | C7 | H71 | 0.3° | 89.9° |
| N1 | C6 | C7 | H72 | 125.5° | 30.0° |
| N1 | C6 | C7 | H73 | 125.0° | 150.0° |
| C6 | C7 | H71 | H72 | 125.3° | 120.0° |
| C6 | C7 | H71 | H73 | 125.3° | 120.1° |
| C6 | C7 | H72 | H73 | 112.5° | 120.1° |
| H71 | C7 | H72 | H73 | 112.3° | 120.0° |
| O2' | C2' | C3' | H2' | 116.7° | 123.5° |
| O2' | C2' | C3' | O3' | 30.1° | 20.3° |
| O2' | C2' | C3' | H3' | 150.1° | 102.2° |
| C3' | C2' | O2' | H3 | 64.0° | 67.3° |
| C2' | C3' | O3' | H3' | 123.9° | 122.6° |
| C2' | C3' | O3' | H4 | 67.4° | 61.5° |
| H2' | C2' | O2' | H3 | 57.2° | 56.4° |
| H2' | C2' | C3' | O3' | 86.6° | 143.8° |
| H2' | C2' | C3' | H3' | 33.4° | 21.3° |
| H3' | C3' | O3' | H4 | 56.5° | 61.1° |
