DBC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O4	C5	sing	1.43Å	1.47Å
O4	HO4	sing	0.97Å	0.95Å
C5	O3	sing	1.43Å	1.48Å
C5	O2	sing	1.44Å	1.45Å
C5	H5	sing	1.09Å	1.10Å
O3	C3	sing	1.44Å	1.43Å
O2	C2	sing	1.45Å	1.42Å
C2	C1	sing	1.53Å	1.53Å
C2	C3	sing	1.55Å	1.53Å
C2	H2	sing	1.09Å	1.10Å
C1	S1	sing	1.81Å	1.81Å
C1	H11	sing	1.09Å	1.10Å
C1	H12	sing	1.09Å	1.10Å
S1	HS1	sing	1.34Å	1.30Å
C3	C4	sing	1.53Å	1.53Å
C3	H3	sing	1.09Å	1.10Å
C4	S4	sing	1.81Å	1.83Å
C4	H41	sing	1.09Å	1.10Å
C4	H42	sing	1.09Å	1.10Å
S4	HS4	sing	1.34Å	1.30Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C5	O4	HO4	109.5°	114.0°
O4	C5	O3	115.8°	109.6°
O4	C5	O2	111.0°	109.6°
O4	C5	H5	103.4°	109.6°
O3	C5	O2	108.1°	108.8°
O3	C5	H5	106.7°	109.6°
C5	O3	C3	107.3°	107.2°
O2	C5	H5	111.8°	109.5°
C5	O2	C2	106.8°	104.8°
O3	C3	C2	105.4°	103.1°
O3	C3	C4	106.7°	110.7°
O3	C3	H3	116.2°	110.7°
O2	C2	C1	108.0°	111.0°
O2	C2	C3	105.9°	101.7°
O2	C2	H2	114.9°	111.0°
C1	C2	C3	115.1°	111.0°
C1	C2	H2	105.6°	110.8°
C2	C1	S1	112.9°	109.5°
C2	C1	H11	108.3°	109.5°
C2	C1	H12	107.6°	109.5°
C3	C2	H2	107.7°	111.0°
C2	C3	C4	115.7°	110.7°
C2	C3	H3	107.3°	110.7°
S1	C1	H11	108.4°	109.5°
S1	C1	H12	107.6°	109.5°
C1	S1	HS1	109.5°	103.0°
H11	C1	H12	112.2°	109.5°
C4	C3	H3	106.0°	110.8°
C3	C4	S4	112.4°	109.5°
C3	C4	H41	108.5°	109.4°
C3	C4	H42	107.8°	109.5°
S4	C4	H41	108.5°	109.5°
S4	C4	H42	107.8°	109.5°
C4	S4	HS4	109.5°	103.0°
H41	C4	H42	111.8°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O4	C5	O3	O2	125.2°	119.8°
O4	C5	O3	H5	114.4°	120.4°
O4	C5	O2	H5	114.9°	120.3°
O4	C5	O3	C3	125.0°	120.6°
O4	C5	O2	C2	143.9°	144.2°
HO4	O4	C5	O3	119.0°	180.0°
HO4	O4	C5	O2	4.7°	60.6°
HO4	O4	C5	H5	124.8°	59.6°
O3	C5	O2	H5	117.1°	119.9°
O3	C5	O2	C2	15.9°	24.3°
C5	O3	C3	C2	14.9°	21.4°
C5	O3	C3	C4	138.5°	139.8°
C5	O3	C3	H3	103.7°	97.0°
O2	C5	O3	C3	0.2°	0.7°
C5	O2	C2	C1	148.5°	154.3°
C5	O2	C2	C3	24.7°	36.1°
C5	O2	C2	H2	94.0°	82.0°
H5	C5	O3	C3	120.6°	119.1°
H5	C5	O2	C2	101.2°	95.5°
O3	C3	C2	O2	24.9°	35.6°
O3	C3	C2	C1	144.1°	153.7°
O3	C3	C2	C4	117.6°	118.4°
O3	C3	C2	H3	124.4°	118.4°
O3	C3	C2	H2	98.5°	82.6°
O3	C3	C4	H3	124.4°	123.1°
O3	C3	C4	S4	174.8°	66.4°
O3	C3	C4	H41	65.1°	173.6°
O3	C3	C4	H42	56.1°	53.6°
O2	C2	C1	C3	118.0°	112.4°
O2	C2	C1	H2	123.4°	123.8°
O2	C2	C3	H2	123.4°	118.1°
O2	C2	C1	S1	67.2°	66.5°
O2	C2	C1	H11	172.8°	173.6°
O2	C2	C1	H12	51.3°	53.6°
O2	C2	C3	C4	142.5°	153.9°
O2	C2	C3	H3	99.5°	82.8°
C1	C2	C3	H2	117.5°	123.7°
C2	C1	S1	H11	120.0°	120.0°
C2	C1	S1	H12	118.5°	120.0°
C2	C1	H11	H12	118.6°	120.0°
C2	C1	S1	HS1	24.4°	180.0°
C1	C2	C3	C4	98.3°	87.9°
C1	C2	C3	H3	19.7°	35.3°
C3	C2	C1	S1	174.9°	178.8°
C3	C2	C1	H11	54.8°	61.2°
C3	C2	C1	H12	66.6°	58.8°
C2	C3	C4	H3	118.7°	123.2°
C2	C3	C4	S4	68.3°	179.9°
C2	C3	C4	H41	51.8°	59.9°
C2	C3	C4	H42	173.0°	60.1°
H2	C2	C1	S1	56.2°	57.3°
H2	C2	C1	H11	63.8°	62.6°
H2	C2	C1	H12	174.7°	177.4°
H2	C2	C3	C4	19.1°	35.8°
H2	C2	C3	H3	137.1°	159.1°
S1	C1	H11	H12	118.6°	120.0°
H11	C1	S1	HS1	144.4°	60.0°
H12	C1	S1	HS1	94.1°	60.0°
C3	C4	S4	H41	120.0°	119.9°
C3	C4	S4	H42	118.7°	120.0°
C3	C4	H41	H42	118.8°	120.0°
C3	C4	S4	HS4	70.7°	180.0°
H3	C3	C4	S4	50.4°	56.7°
H3	C3	C4	H41	170.5°	63.3°
H3	C3	C4	H42	68.3°	176.7°
S4	C4	H41	H42	118.8°	120.0°
H41	C4	S4	HS4	49.3°	60.0°
H42	C4	S4	HS4	170.5°	60.0°

Definition date:	2007-06-21
Last modified:	2024-09-27
Release status:	REL
Processing site:	RCSB