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DAU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O6C6sing1.43Å1.43Å
O6HO6sing0.97Å0.95Å
C6C5sing1.53Å1.52Å
C6HC61sing1.09Å1.10Å
C6HC62sing1.09Å1.10Å
C5O5sing1.43Å1.42Å
C5C4sing1.53Å1.54Å
C5HC5sing1.09Å1.10Å
O5C1sing1.43Å1.38Å
C4O4sing1.43Å1.44Å
C4C3sing1.53Å1.51Å
C4HC4sing1.09Å1.10Å
O4HO4sing0.97Å0.95Å
C3O3sing1.43Å1.41Å
C3C2sing1.53Å1.49Å
C3HC3sing1.09Å1.10Å
O3HO3sing0.97Å0.95Å
C2O2sing1.43Å1.41Å
C2C1sing1.53Å1.52Å
C2HC2sing1.09Å1.10Å
O2HO2sing0.97Å0.95Å
C1O1sing1.43Å1.42Å
C1HC1sing1.09Å1.10Å
O1P2sing1.61Å1.61Å
P2O3Pdoub1.48Å1.59Å
P2O4Psing1.61Å1.57Å
P2OPPsing1.61Å1.56Å
O4PH4POsing0.97Å0.95Å
OPPPsing1.61Å1.64Å
PO1Pdoub1.48Å1.58Å
PO2Psing1.61Å1.60Å
PO5'sing1.61Å1.63Å
O2PH2POsing0.97Å0.95Å
O5'C5'sing1.43Å1.41Å
C5'C4'sing1.53Å1.51Å
C5'HC51sing1.09Å1.10Å
C5'HC52sing1.09Å1.10Å
C4'O4'sing1.44Å1.42Å
C4'C3'sing1.55Å1.51Å
C4'H4'Csing1.09Å1.10Å
O4'C1'sing1.44Å1.44Å
C3'O3'sing1.43Å1.45Å
C3'C2'sing1.55Å1.51Å
C3'H3'Csing1.09Å1.10Å
O3'H3'Osing0.97Å0.95Å
C2'C1'sing1.54Å1.52Å
C2'HC21sing1.09Å1.10Å
C2'HC22sing1.09Å1.10Å
C1'N11sing1.46Å1.48Å
C1'H1'Csing1.09Å1.10Å
N11C61sing1.37Å1.35Å
N11C21sing1.35Å1.36Å
C61C51doub1.35Å1.38Å
C61H61Csing1.08Å1.08Å
C51C5Asing1.51Å1.53Å
C51C41sing1.42Å1.38Å
C5AH5A1sing1.09Å1.10Å
C5AH5A2sing1.09Å1.10Å
C5AH5A3sing1.09Å1.10Å
C21O21doub1.22Å1.30Å
C21N31sing1.35Å1.35Å
N31C41sing1.35Å1.33Å
N31H31Nsing0.97Å1.00Å
C41O41doub1.22Å1.30Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6O6HO6109.5°114.0°
O6C6C5115.4°109.5°
O6C6HC61108.0°109.5°
O6C6HC62108.0°109.5°
C5C6HC61108.0°109.5°
C5C6HC62108.0°109.5°
C6C5O5110.1°109.5°
C6C5C4108.6°109.5°
C6C5HC5108.5°109.5°
HC61C6HC62109.5°109.4°
O5C5C4111.4°109.4°
O5C5HC5109.9°109.4°
C5O5C1119.0°114.1°
C4C5HC5108.3°109.5°
C5C4O4110.8°109.5°
C5C4C3110.4°109.2°
C5C4HC4108.2°109.5°
O5C1C2111.8°109.4°
O5C1O1105.1°109.5°
O5C1HC1111.3°109.5°
O4C4C3109.3°109.5°
O4C4HC4109.5°109.6°
C4O4HO4109.5°114.0°
C3C4HC4108.6°109.6°
C4C3O3108.9°109.5°
C4C3C2112.0°109.1°
C4C3HC3108.5°109.6°
O3C3C2108.9°109.5°
O3C3HC3109.8°109.5°
C3O3HO3109.5°114.0°
C2C3HC3108.7°109.6°
C3C2O2110.3°109.5°
C3C2C1110.8°109.1°
C3C2HC2108.2°109.5°
O2C2C1110.5°109.5°
O2C2HC2109.3°109.5°
C2O2HO2109.5°113.9°
C1C2HC2107.8°109.6°
C2C1O1108.6°109.5°
C2C1HC1109.3°109.4°
O1C1HC1110.7°109.5°
C1O1P2121.8°123.0°
O1P2O3P102.7°109.5°
O1P2O4P111.0°109.5°
O1P2OPP113.5°109.5°
O3PP2O4P120.9°109.4°
O3PP2OPP96.1°109.4°
O4PP2OPP111.8°109.5°
P2O4PH4PO109.5°114.0°
P2OPPP115.3°134.0°
OPPPO1P110.5°109.4°
OPPPO2P94.8°109.5°
OPPPO5'110.6°109.5°
O1PPO2P128.7°109.5°
O1PPO5'99.7°109.5°
O2PPO5'112.3°109.4°
PO2PH2PO109.5°114.0°
PO5'C5'119.0°123.0°
O5'C5'C4'110.0°109.4°
O5'C5'HC51109.3°109.5°
O5'C5'HC52109.3°109.4°
C4'C5'HC51109.3°109.5°
C4'C5'HC52109.3°109.5°
C5'C4'O4'111.4°110.6°
C5'C4'C3'112.3°110.6°
C5'C4'H4'C108.5°110.6°
HC51C5'HC52109.5°109.5°
O4'C4'C3'106.4°103.5°
O4'C4'H4'C109.7°110.6°
C4'O4'C1'111.3°107.0°
C3'C4'H4'C108.4°110.7°
C4'C3'O3'106.2°110.9°
C4'C3'C2'99.2°102.1°
C4'C3'H3'C110.9°110.9°
O4'C1'C2'100.9°107.3°
O4'C1'N11104.0°109.9°
O4'C1'H1'C110.8°109.9°
O3'C3'C2'116.9°110.9°
O3'C3'H3'C111.9°110.9°
C3'O3'H3'O109.5°114.0°
C2'C3'H3'C110.9°110.9°
C3'C2'C1'103.5°104.2°
C3'C2'HC21110.9°110.5°
C3'C2'HC22110.9°110.5°
C1'C2'HC21110.9°110.5°
C1'C2'HC22110.9°110.5°
C2'C1'N11120.8°109.9°
C2'C1'H1'C109.5°109.8°
HC21C2'HC22109.5°110.5°
N11C1'H1'C110.1°110.0°
C1'N11C61120.4°119.7°
C1'N11C21120.7°119.7°
C61N11C21118.9°120.6°
N11C61C51119.7°119.7°
N11C61H61C120.1°120.2°
N11C21O21120.6°119.5°
N11C21N31122.3°120.9°
C51C61H61C120.1°120.1°
C61C51C5A120.5°120.4°
C61C51C41119.0°119.1°
C5AC51C41120.4°120.5°
C51C5AH5A1109.5°109.5°
C51C5AH5A2109.5°109.4°
C51C5AH5A3109.5°109.4°
C51C41N31120.8°119.4°
C51C41O41119.3°120.3°
H5A1C5AH5A2109.5°109.5°
H5A1C5AH5A3109.4°109.5°
H5A2C5AH5A3109.5°109.4°
O21C21N31117.1°119.5°
C21N31C41119.2°120.3°
C21N31H31N120.4°119.8°
C41N31H31N120.4°119.9°
N31C41O41119.9°120.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O6C6C5HC61120.8°120.0°
O6C6C5HC62120.9°120.0°
O6C6HC61HC62117.3°120.0°
O6C6C5O563.5°65.0°
O6C6C5C4174.3°175.0°
O6C6C5HC556.8°55.0°
HO6O6C6C5180.0°179.9°
HO6O6C6HC6159.2°59.9°
HO6O6C6HC6259.1°60.0°
C5C6HC61HC62117.3°120.0°
C6C5O5C4120.5°120.0°
C6C5O5HC5119.5°120.0°
C6C5C4HC5117.7°120.1°
C6C5O5C1171.5°178.8°
C6C5C4O469.0°62.5°
C6C5C4C3169.8°177.6°
C6C5C4HC451.0°57.6°
HC61C6C5O557.3°55.1°
HC61C6C5C464.9°64.9°
HC61C6C5HC5177.6°175.0°
HC62C6C5O5175.6°175.0°
HC62C6C5C453.4°55.0°
HC62C6C5HC564.1°65.0°
O5C5C4HC5120.9°119.9°
O5C5C4O4169.6°177.5°
O5C5C4C348.4°57.6°
O5C5C4HC470.4°62.4°
C5O5C1C252.4°61.2°
C5O5C1O165.3°58.9°
C5O5C1HC1174.8°178.9°
C4C5O5C151.0°61.1°
C5C4O4C3121.8°119.7°
C5C4O4HC4119.3°120.1°
C5C4C3HC4118.5°119.9°
C5C4O4HO4180.0°179.9°
C5C4C3O3172.7°176.8°
C5C4C3C252.2°57.0°
C5C4C3HC367.8°63.0°
HC5C5O5C169.0°58.8°
HC5C5C4O448.6°57.6°
HC5C5C4C372.6°62.3°
HC5C5C4HC4168.7°177.7°
O5C1C2C351.6°57.6°
O5C1C2O2174.1°177.5°
O5C1C2O1115.5°120.0°
O5C1C2HC1123.6°120.0°
O5C1C2HC266.5°62.3°
O5C1O1HC1120.2°120.0°
O5C1O1P287.2°89.9°
O4C4C3HC4119.4°120.2°
O4C4C3O365.2°63.2°
O4C4C3C2174.3°176.9°
O4C4C3HC354.3°56.9°
C3C4O4HO458.1°60.4°
C4C3O3C2122.4°119.6°
C4C3O3HC3118.7°120.2°
C4C3C2HC3119.9°119.9°
C4C3O3HO3180.0°180.0°
C4C3C2O2176.2°176.9°
C4C3C2C153.6°57.0°
C4C3C2HC264.3°63.0°
HC4C4O4HO460.7°59.8°
HC4C4C3O354.2°57.0°
HC4C4C3C266.3°62.9°
HC4C4C3HC3173.7°177.1°
O3C3C2HC3119.6°120.2°
O3C3C2O263.3°63.3°
O3C3C2C1174.1°176.8°
O3C3C2HC256.2°56.9°
C2C3O3HO357.6°60.4°
C3C2O2C1122.8°119.7°
C3C2O2HC2118.8°120.1°
C3C2C1HC2118.1°119.9°
C3C2O2HO2180.0°180.0°
C3C2C1O163.9°62.4°
C3C2C1HC1175.2°177.6°
HC3C3O3HO361.3°59.8°
HC3C3C2O256.3°56.9°
HC3C3C2C166.3°63.0°
HC3C3C2HC2175.8°177.1°
O2C2C1HC2119.3°120.2°
O2C2C1O158.6°57.5°
O2C2C1HC162.3°62.5°
C1C2O2HO257.2°60.4°
C2C1O1HC1120.0°120.0°
C2C1O1P2153.0°150.1°
HC2C2O2HO261.2°59.9°
HC2C2C1O1178.0°177.6°
HC2C2C1HC157.1°57.7°
C1O1P2O3P46.7°54.9°
C1O1P2O4P177.2°65.0°
C1O1P2OPP55.9°174.9°
HC1C1O1P233.0°30.1°
O1P2O3PO4P124.3°120.0°
O1P2O3POPP115.8°120.0°
O1P2O4POPP127.8°120.0°
O1P2O4PH4PO120.3°60.0°
O1P2OPPP147.6°165.0°
O3PP2O4POPP111.9°119.9°
O3PP2O4PH4PO0.0°180.0°
O3PP2OPPP40.8°45.0°
O4PP2OPPP85.9°74.9°
OPPP2O4PH4PO111.8°60.1°
P2OPPPO1P21.4°40.0°
P2OPPPO2P155.9°80.0°
P2OPPPO5'88.1°160.0°
OPPPO1PO2P114.5°120.0°
OPPPO1PO5'116.4°120.0°
OPPPO2PO5'114.6°120.1°
OPPPO2PH2PO121.2°60.0°
OPPPO5'C5'53.5°175.0°
O1PPO2PO5'124.3°120.0°
O1PPO2PH2PO0.0°180.0°
O1PPO5'C5'169.8°55.0°
O2PPO5'C5'51.0°65.0°
O5'PO2PH2PO124.2°60.1°
PO5'C5'C4'131.4°180.0°
PO5'C5'HC5111.4°60.0°
PO5'C5'HC52108.5°60.0°
O5'C5'C4'HC51120.1°120.0°
O5'C5'C4'HC52120.1°119.9°
O5'C5'HC51HC52119.8°120.0°
O5'C5'C4'O4'71.0°66.5°
O5'C5'C4'C3'48.3°179.4°
O5'C5'C4'H4'C168.1°56.4°
C4'C5'HC51HC52119.8°120.0°
C5'C4'O4'C3'122.8°118.5°
C5'C4'O4'H4'C120.1°122.9°
C5'C4'C3'H4'C119.9°123.0°
C5'C4'O4'C1'117.0°158.5°
C5'C4'C3'O3'145.8°86.3°
C5'C4'C3'C2'92.6°155.5°
C5'C4'C3'H3'C24.1°37.3°
HC51C5'C4'O4'168.9°53.5°
HC51C5'C4'C3'71.8°60.6°
HC51C5'C4'H4'C48.0°176.4°
HC52C5'C4'O4'49.0°173.5°
HC52C5'C4'C3'168.3°59.5°
HC52C5'C4'H4'C71.9°63.5°
O4'C4'C3'H4'C118.0°118.6°
O4'C4'C3'O3'92.1°155.2°
O4'C4'C3'C2'29.5°37.0°
O4'C4'C3'H3'C146.2°81.2°
C4'O4'C1'C2'20.5°26.5°
C4'O4'C1'N11146.3°146.0°
C4'O4'C1'H1'C95.4°92.9°
C3'C4'O4'C1'5.8°40.1°
C4'C3'O3'C2'109.5°112.7°
C4'C3'O3'H3'C121.1°123.7°
C4'C3'C2'H3'C116.6°118.2°
C4'C3'O3'H3'O180.0°180.0°
C4'C3'C2'C1'41.9°20.9°
C4'C3'C2'HC2177.2°139.6°
C4'C3'C2'HC22160.9°97.8°
H4'CC4'O4'C1'122.9°78.6°
H4'CC4'C3'O3'25.9°36.6°
H4'CC4'C3'C2'147.5°81.6°
H4'CC4'C3'H3'C95.8°160.3°
O4'C1'C2'C3'39.1°2.1°
O4'C1'C2'N11113.7°119.4°
O4'C1'C2'H1'C116.9°119.5°
O4'C1'C2'HC2180.0°116.6°
O4'C1'C2'HC22158.2°120.7°
O4'C1'N11H1'C118.7°121.1°
O4'C1'N11C6166.4°126.4°
O4'C1'N11C21111.6°53.3°
O3'C3'C2'H3'C129.9°123.6°
O3'C3'C2'C1'71.6°139.1°
O3'C3'C2'HC21169.3°102.2°
O3'C3'C2'HC2247.4°20.4°
C2'C3'O3'H3'O70.5°67.3°
C3'C2'C1'HC21119.1°118.7°
C3'C2'C1'HC22119.1°118.7°
C3'C2'HC21HC22122.8°122.6°
C3'C2'C1'N11152.8°121.5°
C3'C2'C1'H1'C77.8°117.4°
H3'CC3'O3'H3'O58.9°56.3°
H3'CC3'C2'C1'158.5°97.3°
H3'CC3'C2'HC2139.5°21.4°
H3'CC3'C2'HC2282.4°144.0°
C1'C2'HC21HC22122.7°122.6°
C2'C1'N11H1'C129.2°121.0°
C2'C1'N11C6145.7°115.7°
C2'C1'N11C21136.4°64.6°
HC21C2'C1'N1133.7°2.8°
HC21C2'C1'H1'C163.2°123.9°
HC22C2'C1'N1188.2°119.8°
HC22C2'C1'H1'C41.3°1.3°
C1'N11C61C21178.0°179.7°
C1'N11C61C51177.8°180.0°
C1'N11C61H61C2.1°0.1°
C1'N11C21O212.5°0.0°
C1'N11C21N31176.4°179.9°
H1'CC1'N11C61174.9°5.3°
H1'CC1'N11C217.1°174.4°
N11C61C51H61C180.0°180.0°
N11C61C51C5A179.0°180.0°
N11C61C51C411.4°0.0°
C61N11C21O21179.5°179.7°
C61N11C21N311.6°0.2°
C21N11C61C510.2°0.3°
C21N11C61H61C179.9°179.8°
N11C21O21N31178.9°180.0°
N11C21N31C411.3°0.1°
N11C21N31H31N178.7°180.0°
C61C51C5AC41177.5°180.0°
C61C51C5AH5A1180.0°90.0°
C61C51C5AH5A260.0°150.0°
C61C51C5AH5A360.0°30.1°
C61C51C41N311.7°0.3°
C61C51C41O41178.4°180.0°
H61CC61C51C5A1.0°0.1°
H61CC61C51C41178.5°180.0°
C51C5AH5A1H5A2120.0°120.0°
C51C5AH5A1H5A3120.0°120.0°
C51C5AH5A2H5A3120.0°119.9°
C5AC51C41N31179.3°179.7°
C5AC51C41O410.8°0.0°
C41C51C5AH5A12.5°90.0°
C41C51C5AH5A2117.6°30.1°
C41C51C5AH5A3122.5°150.0°
C51C41N31C210.4°0.3°
C51C41N31O41179.9°179.7°
C51C41N31H31N179.6°179.8°
H5A1C5AH5A2H5A3120.0°120.0°
O21C21N31C41179.8°180.0°
O21C21N31H31N0.2°0.1°
C21N31C41H31N180.0°179.9°
C21N31C41O41179.7°180.0°
H31NN31C41O410.3°0.1°

223532

PDB entries from 2024-08-07

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