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SummaryGeometryRelated PDB entries

D9K

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C07C06sing1.53Å1.71Å
C07C08sing1.53Å1.54Å
C14C15doub1.38Å1.38ÅAromatic
C14C13sing1.39Å1.39ÅAromatic
C06C05sing1.53Å1.71Å
C15N16sing1.32Å1.32ÅAromatic
C08S09sing1.82Å1.62Å
C13C03doub1.39Å1.39ÅAromatic
N16C02doub1.32Å1.32ÅAromatic
C03C02sing1.39Å1.39ÅAromatic
C03N04sing1.40Å1.45Å
C05N04sing1.47Å1.45Å
C05C12sing1.53Å1.53Å
C02C01sing1.51Å1.52Å
S09O11doub1.42Å1.47Å
S09C12sing1.82Å1.62Å
S09O10doub1.42Å1.47Å
C15H1sing1.08Å1.08Å
C14H2sing1.08Å1.08Å
C12H3sing1.09Å1.10Å
C12H4sing1.09Å1.10Å
C01H5sing1.09Å1.10Å
C01H6sing1.09Å1.10Å
C01H7sing1.09Å1.10Å
N04H8sing0.97Å1.00Å
C05H9sing1.09Å1.10Å
C06H10sing1.09Å1.10Å
C06H11sing1.09Å1.10Å
C07H12sing1.09Å1.10Å
C07H13sing1.09Å1.10Å
C08H14sing1.09Å1.10Å
C08H15sing1.09Å1.10Å
C13H16sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C06C07C08114.9°110.0°
C07C06C05111.8°110.6°
C07C06H10108.9°109.2°
C07C06H11108.9°109.2°
C06C07H12108.1°109.4°
C06C07H13108.1°109.3°
C07C08S09113.1°109.0°
C08C07H12108.1°109.4°
C08C07H13108.1°109.4°
C07C08H14108.5°109.5°
C07C08H15108.5°109.6°
C15C14C13118.9°119.2°
C14C15N16121.8°121.0°
C14C15H1119.1°119.5°
C15C14H2120.6°120.4°
C14C13C03117.8°118.3°
C13C14H2120.6°120.4°
C14C13H16121.1°120.8°
C06C05N04108.7°109.4°
C06C05C12113.1°110.0°
C06C05H9107.2°109.3°
C05C06H10108.9°109.2°
C05C06H11108.9°109.3°
C15N16C02120.9°121.8°
N16C15H1119.1°119.5°
C08S09O11104.4°108.7°
C08S09C12123.2°101.2°
C08S09O10105.1°108.7°
S09C08H14108.6°109.5°
S09C08H15108.6°109.5°
C13C03C02120.0°119.0°
C13C03N04119.6°120.5°
C03C13H16121.1°120.8°
N16C02C03120.5°120.7°
N16C02C01119.7°119.7°
C02C03N04120.4°120.5°
C03C02C01119.8°119.7°
C03N04C05119.4°120.0°
C03N04H8107.0°120.0°
N04C05C12108.4°109.4°
C05N04H8106.9°120.0°
N04C05H9110.3°109.4°
C05C12S09110.9°109.1°
C05C12H3109.1°109.6°
C05C12H4109.1°109.5°
C12C05H9109.2°109.4°
C02C01H5109.5°109.5°
C02C01H6109.4°109.5°
C02C01H7109.5°109.5°
O11S09C12103.8°108.8°
O11S09O10116.5°119.3°
C12S09O10104.7°108.8°
S09C12H3109.1°109.6°
S09C12H4109.1°109.6°
H3C12H4109.5°109.5°
H5C01H6109.5°109.4°
H5C01H7109.4°109.4°
H6C01H7109.5°109.5°
H10C06H11109.4°109.3°
H12C07H13109.4°109.3°
H14C08H15109.5°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C06C07C08H12120.8°120.2°
C06C07C08H13120.8°120.1°
C07C06C05H10120.4°120.2°
C07C06C05H11120.3°120.2°
C06C07C08S0919.0°63.7°
C07C06C05N04179.2°169.9°
C07C06C05C1258.9°70.0°
C07C06C05H961.5°50.1°
C07C06H10H11118.9°119.4°
C06C07H12H13117.5°119.7°
C06C07C08H14101.5°176.5°
C06C07C08H15139.6°56.2°
C08C07C06C0527.4°70.0°
C07C08S09H14120.5°119.8°
C07C08S09H15120.6°119.9°
C07C08S09O1172.0°168.7°
C07C08S09C1245.5°54.3°
C07C08S09O10164.9°60.1°
C08C07C06H1092.9°169.7°
C08C07C06H11147.8°50.2°
C08C07H12H13117.5°119.8°
C07C08H14H15118.3°120.3°
C15C14C13H2180.0°179.9°
C14C15N16H1180.0°179.6°
C15C14C13C030.0°0.0°
C14C15N16C020.1°0.3°
C15C14C13H16180.0°179.9°
C13C14C15N160.1°0.0°
C14C13C03H16180.0°179.9°
C14C13C03C020.0°0.2°
C14C13C03N04180.0°179.8°
C13C14C15H1179.9°179.7°
C06C05N04C0365.2°84.5°
C06C05N04C12123.2°120.5°
C06C05N04H9117.3°119.7°
C06C05C12H9119.2°120.1°
C06C05C12S0935.9°63.7°
C06C05C12H384.3°56.2°
C06C05C12H4156.1°176.4°
C06C05N04H856.2°95.5°
C05C06H10H11118.9°119.5°
C05C06C07H1293.4°50.2°
C05C06C07H13148.3°169.8°
C15N16C02C030.0°0.5°
C15N16C02C01179.9°180.0°
N16C15C14H2179.8°180.0°
C08S09C12C0515.0°54.3°
C08S09O11C12130.1°109.3°
C08S09O11O10115.3°125.2°
C08S09C12O10119.5°114.3°
C08S09C12H3135.2°65.6°
C08S09C12H4105.2°174.2°
S09C08C07H12139.8°56.5°
S09C08C07H13101.8°176.2°
S09C08H14H15118.3°120.2°
C13C03C02N160.1°0.5°
C13C03C02N04180.0°180.0°
C13C03N04C0532.3°0.0°
C13C03C02C01180.0°180.0°
C03C13C14H2179.9°180.0°
C13C03N04H8153.7°180.0°
N16C02C03C01180.0°179.6°
N16C02C03N04180.0°179.6°
C02N16C15H1179.9°179.9°
N16C02C01H50.0°89.5°
N16C02C01H6120.0°30.4°
N16C02C01H7120.0°150.5°
C02C03N04C05147.7°180.0°
C03C02C01H5180.0°90.0°
C03C02C01H660.0°150.0°
C03C02C01H760.0°30.0°
C02C03N04H826.3°0.1°
C02C03C13H16179.9°179.7°
C03N04C05H8121.4°180.0°
C03N04C05C12171.6°155.0°
N04C03C02C010.0°0.0°
C03N04C05H952.0°35.2°
N04C03C13H160.1°0.2°
N04C05C12H9120.2°119.8°
N04C05C12S09156.4°176.2°
N04C05C12H336.2°63.9°
N04C05C12H483.3°56.3°
N04C05C06H1058.9°49.6°
N04C05C06H1160.4°69.9°
C05C12S09O11102.8°168.6°
C05C12S09H3120.2°119.9°
C05C12S09H4120.2°119.9°
C05C12S09O10134.5°60.0°
C05C12H3H4119.3°120.2°
C12C05N04H867.0°25.0°
C12C05C06H1061.5°169.8°
C12C05C06H11179.2°50.2°
C02C01H5H6120.0°120.1°
C02C01H5H7120.0°120.0°
C02C01H6H7120.0°120.1°
O11S09C12O10122.6°131.4°
O11S09C12H317.4°48.7°
O11S09C12H4137.0°71.5°
O11S09C08H14167.5°71.5°
O11S09C08H1548.6°48.7°
S09C12H3H4119.4°120.2°
S09C12C05H983.4°56.3°
C12S09C08H1475.0°174.1°
C12S09C08H15166.1°65.6°
O10S09C12H3105.3°179.9°
O10S09C12H414.3°59.9°
O10S09C08H1444.4°59.7°
O10S09C08H1574.5°180.0°
H1C15C14H20.1°0.4°
H2C14C13H160.0°0.0°
H3C12C05H9156.4°176.3°
H4C12C05H936.9°63.6°
H5C01H6H7120.0°119.9°
H8N04C05H9173.5°144.8°
H9C05C06H10178.1°70.1°
H9C05C06H1158.8°170.4°
H10C06C07H12146.2°70.1°
H10C06C07H1327.9°49.6°
H11C06C07H1227.0°170.4°
H11C06C07H1391.4°69.9°
H12C07C08H1419.2°63.3°
H12C07C08H1599.6°176.4°
H13C07C08H14137.6°56.4°
H13C07C08H1518.8°63.9°

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PDB entries from 2024-07-17

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