D8X
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C2' | C1' | sing | 1.53Å | 1.52Å | |
| C1' | C1 | sing | 1.53Å | 1.54Å | |
| C1' | C22 | sing | 1.53Å | 1.55Å | |
| O3P | P | doub | 1.48Å | 1.48Å | |
| C1 | C2 | sing | 1.51Å | 1.49Å | |
| O4 | C4 | sing | 1.43Å | 1.41Å | |
| C2 | O2 | doub | 1.21Å | 1.24Å | |
| C2 | C3 | sing | 1.51Å | 1.54Å | |
| P | O2P | sing | 1.61Å | 1.58Å | |
| P | O1P | sing | 1.61Å | 1.49Å | |
| P | O5 | sing | 1.61Å | 1.64Å | |
| O3 | C3 | sing | 1.43Å | 1.39Å | |
| C4 | C3 | sing | 1.53Å | 1.54Å | |
| C4 | C5 | sing | 1.53Å | 1.50Å | |
| C3 | O3' | sing | 1.43Å | 1.42Å | |
| O5 | C5 | sing | 1.43Å | 1.40Å | |
| O1P | H1 | sing | 0.97Å | 0.95Å | |
| O2P | H2 | sing | 0.97Å | 0.95Å | |
| C5 | H3 | sing | 1.09Å | 1.10Å | |
| C5 | H4 | sing | 1.09Å | 1.10Å | |
| C4 | H5 | sing | 1.09Å | 1.10Å | |
| O4 | H6 | sing | 0.97Å | 0.95Å | |
| O3 | H7 | sing | 0.97Å | 0.95Å | |
| O3' | H8 | sing | 0.97Å | 0.95Å | |
| C1 | H9 | sing | 1.09Å | 1.10Å | |
| C1 | H10 | sing | 1.09Å | 1.10Å | |
| C1' | H11 | sing | 1.09Å | 1.10Å | |
| C2' | H12 | sing | 1.09Å | 1.10Å | |
| C2' | H13 | sing | 1.09Å | 1.10Å | |
| C2' | H14 | sing | 1.09Å | 1.10Å | |
| C22 | H15 | sing | 1.09Å | 1.10Å | |
| C22 | H16 | sing | 1.09Å | 1.10Å | |
| C22 | H17 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2' | C1' | C1 | 108.6° | 109.5° |
| C2' | C1' | C22 | 108.8° | 109.5° |
| C2' | C1' | H11 | 109.1° | 109.5° |
| C1' | C2' | H12 | 109.5° | 109.4° |
| C1' | C2' | H13 | 109.4° | 109.4° |
| C1' | C2' | H14 | 109.4° | 109.4° |
| C1 | C1' | C22 | 112.7° | 109.5° |
| C1' | C1 | C2 | 106.6° | 109.5° |
| C1' | C1 | H9 | 110.2° | 109.5° |
| C1' | C1 | H10 | 110.2° | 109.5° |
| C1 | C1' | H11 | 108.9° | 109.4° |
| C22 | C1' | H11 | 108.7° | 109.5° |
| C1' | C22 | H15 | 109.5° | 109.4° |
| C1' | C22 | H16 | 109.5° | 109.4° |
| C1' | C22 | H17 | 109.5° | 109.4° |
| O3P | P | O2P | 108.9° | 109.5° |
| O3P | P | O1P | 110.2° | 109.4° |
| O3P | P | O5 | 108.0° | 109.5° |
| C1 | C2 | O2 | 120.8° | 119.9° |
| C1 | C2 | C3 | 118.6° | 120.0° |
| C2 | C1 | H9 | 110.2° | 109.5° |
| C2 | C1 | H10 | 110.2° | 109.4° |
| O4 | C4 | C3 | 108.7° | 109.5° |
| O4 | C4 | C5 | 106.6° | 109.5° |
| O4 | C4 | H5 | 110.3° | 109.4° |
| C4 | O4 | H6 | 109.5° | 114.0° |
| O2 | C2 | C3 | 120.1° | 120.0° |
| C2 | C3 | O3 | 110.8° | 109.5° |
| C2 | C3 | C4 | 111.8° | 109.5° |
| C2 | C3 | O3' | 105.5° | 109.5° |
| O2P | P | O1P | 111.0° | 109.5° |
| O2P | P | O5 | 110.3° | 109.5° |
| P | O2P | H2 | 109.5° | 114.0° |
| O1P | P | O5 | 108.4° | 109.5° |
| P | O1P | H1 | 109.5° | 114.0° |
| P | O5 | C5 | 120.9° | 123.0° |
| O3 | C3 | C4 | 113.4° | 109.5° |
| O3 | C3 | O3' | 107.6° | 109.5° |
| C3 | O3 | H7 | 109.5° | 114.0° |
| C3 | C4 | C5 | 113.7° | 109.5° |
| C4 | C3 | O3' | 107.2° | 109.5° |
| C3 | C4 | H5 | 108.5° | 109.5° |
| C4 | C5 | O5 | 107.7° | 109.5° |
| C4 | C5 | H3 | 109.9° | 109.5° |
| C4 | C5 | H4 | 109.9° | 109.5° |
| C5 | C4 | H5 | 108.9° | 109.5° |
| C3 | O3' | H8 | 109.5° | 114.0° |
| O5 | C5 | H3 | 109.9° | 109.5° |
| O5 | C5 | H4 | 109.9° | 109.4° |
| H3 | C5 | H4 | 109.5° | 109.4° |
| H9 | C1 | H10 | 109.5° | 109.4° |
| H12 | C2' | H13 | 109.5° | 109.5° |
| H12 | C2' | H14 | 109.5° | 109.5° |
| H13 | C2' | H14 | 109.5° | 109.5° |
| H15 | C22 | H16 | 109.4° | 109.5° |
| H15 | C22 | H17 | 109.5° | 109.6° |
| H16 | C22 | H17 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2' | C1' | C1 | C22 | 120.6° | 120.0° |
| C2' | C1' | C1 | H11 | 118.7° | 120.0° |
| C2' | C1' | C22 | H11 | 118.7° | 120.0° |
| C2' | C1' | C1 | C2 | 175.2° | 175.0° |
| C2' | C1' | C1 | H9 | 55.7° | 55.0° |
| C2' | C1' | C1 | H10 | 65.2° | 65.0° |
| C1' | C2' | H12 | H13 | 120.0° | 119.9° |
| C1' | C2' | H12 | H14 | 120.0° | 119.9° |
| C1' | C2' | H13 | H14 | 120.0° | 120.0° |
| C2' | C1' | C22 | H15 | 180.0° | 60.0° |
| C2' | C1' | C22 | H16 | 60.0° | 180.0° |
| C2' | C1' | C22 | H17 | 60.0° | 60.0° |
| C1 | C1' | C22 | H11 | 120.8° | 120.0° |
| C1' | C1 | C2 | H9 | 119.6° | 120.0° |
| C1' | C1 | C2 | H10 | 119.5° | 120.0° |
| C1' | C1 | C2 | O2 | 29.0° | 0.0° |
| C1' | C1 | C2 | C3 | 159.3° | 180.0° |
| C1' | C1 | H9 | H10 | 121.3° | 120.0° |
| C1 | C1' | C2' | H12 | 180.0° | 60.0° |
| C1 | C1' | C2' | H13 | 60.0° | 180.0° |
| C1 | C1' | C2' | H14 | 60.0° | 60.0° |
| C1 | C1' | C22 | H15 | 59.5° | 60.0° |
| C1 | C1' | C22 | H16 | 60.5° | 60.0° |
| C1 | C1' | C22 | H17 | 179.5° | 180.0° |
| C22 | C1' | C1 | C2 | 64.2° | 65.0° |
| C22 | C1' | C1 | H9 | 176.3° | 175.0° |
| C22 | C1' | C1 | H10 | 55.4° | 55.0° |
| C22 | C1' | C2' | H12 | 57.0° | 60.0° |
| C22 | C1' | C2' | H13 | 63.0° | 60.0° |
| C22 | C1' | C2' | H14 | 177.0° | 180.0° |
| C1' | C22 | H15 | H16 | 120.0° | 119.9° |
| C1' | C22 | H15 | H17 | 120.0° | 120.0° |
| C1' | C22 | H16 | H17 | 120.0° | 120.0° |
| O3P | P | O2P | O1P | 121.5° | 119.9° |
| O3P | P | O2P | O5 | 118.4° | 120.1° |
| O3P | P | O1P | O5 | 118.1° | 120.0° |
| O3P | P | O5 | C5 | 69.6° | 55.0° |
| O3P | P | O1P | H1 | 0.0° | 60.0° |
| O3P | P | O2P | H2 | 0.0° | 179.9° |
| C1 | C2 | O2 | C3 | 171.5° | 180.0° |
| C1 | C2 | C3 | O3 | 10.9° | 175.0° |
| C1 | C2 | C3 | C4 | 116.6° | 55.0° |
| C1 | C2 | C3 | O3' | 127.1° | 65.0° |
| C2 | C1 | H9 | H10 | 121.3° | 119.9° |
| C2 | C1 | C1' | H11 | 56.5° | 55.0° |
| O4 | C4 | C3 | C2 | 66.5° | 55.0° |
| O4 | C4 | C3 | O3 | 59.7° | 175.0° |
| O4 | C4 | C3 | C5 | 118.6° | 120.0° |
| O4 | C4 | C3 | H5 | 120.0° | 120.0° |
| O4 | C4 | C5 | H5 | 119.1° | 120.0° |
| O4 | C4 | C3 | O3' | 178.3° | 65.0° |
| O4 | C4 | C5 | O5 | 77.5° | 65.0° |
| O4 | C4 | C5 | H3 | 42.3° | 175.0° |
| O4 | C4 | C5 | H4 | 162.8° | 55.0° |
| O2 | C2 | C3 | O3 | 160.8° | 5.0° |
| O2 | C2 | C3 | C4 | 71.7° | 125.0° |
| O2 | C2 | C3 | O3' | 44.6° | 115.0° |
| O2 | C2 | C1 | H9 | 148.6° | 120.0° |
| O2 | C2 | C1 | H10 | 90.5° | 120.1° |
| C2 | C3 | O3 | C4 | 126.7° | 120.0° |
| C2 | C3 | O3 | O3' | 114.9° | 120.0° |
| C2 | C3 | C4 | O3' | 115.2° | 120.0° |
| C2 | C3 | C4 | C5 | 174.9° | 175.0° |
| C2 | C3 | C4 | H5 | 53.6° | 65.0° |
| C2 | C3 | O3 | H7 | 180.0° | 60.0° |
| C2 | C3 | O3' | H8 | 18.1° | 60.0° |
| C3 | C2 | C1 | H9 | 39.8° | 60.0° |
| C3 | C2 | C1 | H10 | 81.1° | 60.0° |
| O2P | P | O1P | O5 | 121.2° | 120.0° |
| O2P | P | O5 | C5 | 49.4° | 65.0° |
| O2P | P | O1P | H1 | 120.7° | 60.0° |
| O1P | P | O5 | C5 | 171.0° | 175.0° |
| O1P | P | O2P | H2 | 121.5° | 60.0° |
| P | O5 | C5 | C4 | 104.9° | 180.0° |
| O5 | P | O1P | H1 | 118.1° | 180.0° |
| O5 | P | O2P | H2 | 118.4° | 60.0° |
| P | O5 | C5 | H3 | 14.9° | 60.0° |
| P | O5 | C5 | H4 | 135.4° | 60.0° |
| O3 | C3 | C4 | O3' | 118.6° | 120.0° |
| O3 | C3 | C4 | C5 | 58.9° | 65.0° |
| O3 | C3 | C4 | H5 | 179.7° | 55.0° |
| O3 | C3 | O3' | H8 | 136.5° | 180.0° |
| C3 | C4 | C5 | H5 | 121.1° | 120.0° |
| C3 | C4 | C5 | O5 | 162.7° | 175.0° |
| C3 | C4 | C5 | H3 | 77.5° | 55.0° |
| C3 | C4 | C5 | H4 | 43.0° | 65.0° |
| C3 | C4 | O4 | H6 | 160.3° | 60.0° |
| C4 | C3 | O3 | H7 | 53.3° | 60.1° |
| C4 | C3 | O3' | H8 | 101.2° | 60.0° |
| C5 | C4 | C3 | O3' | 59.7° | 55.0° |
| C4 | C5 | O5 | H3 | 119.8° | 120.0° |
| C4 | C5 | O5 | H4 | 119.7° | 120.0° |
| C4 | C5 | H3 | H4 | 120.8° | 120.0° |
| C5 | C4 | O4 | H6 | 37.3° | 60.1° |
| O3' | C3 | C4 | H5 | 61.7° | 175.0° |
| O3' | C3 | O3 | H7 | 65.1° | 179.9° |
| O5 | C5 | H3 | H4 | 120.8° | 120.0° |
| O5 | C5 | C4 | H5 | 41.6° | 55.0° |
| H3 | C5 | C4 | H5 | 161.3° | 65.1° |
| H4 | C5 | C4 | H5 | 78.1° | 175.0° |
| H5 | C4 | O4 | H6 | 80.8° | 180.0° |
| H9 | C1 | C1' | H11 | 63.1° | 65.0° |
| H10 | C1 | C1' | H11 | 176.0° | 175.0° |
| H11 | C1' | C2' | H12 | 61.4° | 180.0° |
| H11 | C1' | C2' | H13 | 178.6° | 60.0° |
| H11 | C1' | C2' | H14 | 58.6° | 60.0° |
| H11 | C1' | C22 | H15 | 61.3° | 180.0° |
| H11 | C1' | C22 | H16 | 178.7° | 60.0° |
| H11 | C1' | C22 | H17 | 58.7° | 60.0° |
| H12 | C2' | H13 | H14 | 120.1° | 120.1° |
| H15 | C22 | H16 | H17 | 120.0° | 120.1° |
