Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

D8L

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C9C8sing1.51Å1.50Å
C9C10sing1.53Å1.52Å
C11S1sing1.81Å1.82Å
C8C7doub1.34Å1.36ÅAromatic
C8C5sing1.47Å1.44ÅAromatic
C7N1sing1.37Å1.37ÅAromatic
N1C4sing1.38Å1.36ÅAromatic
C5C6doub1.40Å1.40ÅAromatic
C5C4sing1.41Å1.41ÅAromatic
C6C1sing1.37Å1.38ÅAromatic
C4C3doub1.39Å1.39ÅAromatic
C3C2sing1.38Å1.37ÅAromatic
C1C2doub1.39Å1.40ÅAromatic
O1C12doub1.21Å1.23Å
C12C10sing1.51Å1.53Å
C12O2sing1.34Å1.16Å
C10S1sing1.81Å1.78Å
C6H4sing1.08Å1.08Å
C11H10sing1.09Å1.10Å
C11H11sing1.09Å1.10Å
C11H12sing1.09Å1.10Å
C7H6sing1.08Å1.08Å
C9H7sing1.09Å1.10Å
C9H8sing1.09Å1.10Å
C10H9sing1.09Å1.10Å
N1H5sing0.97Å1.00Å
C3H3sing1.08Å1.08Å
C1H1sing1.08Å1.08Å
C2H2sing1.08Å1.08Å
O2H13sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C8C9C10112.8°109.5°
C9C8C7127.2°126.5°
C9C8C5127.1°126.5°
C8C9H7108.6°109.5°
C8C9H8108.6°109.4°
C9C10C12116.8°109.5°
C9C10S1116.4°109.5°
C10C9H7108.6°109.5°
C10C9H8108.6°109.5°
C9C10H9107.9°109.5°
C11S1C10109.5°103.0°
S1C11H10109.5°109.5°
S1C11H11109.5°109.5°
S1C11H12109.5°109.5°
C7C8C5105.6°106.9°
C8C7N1110.6°109.9°
C8C7H6124.7°125.0°
C8C5C6134.5°134.0°
C8C5C4107.3°106.1°
C7N1C4109.3°109.9°
N1C7H6124.7°125.1°
C7N1H5125.4°125.1°
N1C4C5107.2°107.2°
N1C4C3130.0°133.5°
C4N1H5125.4°125.0°
C6C5C4118.3°120.0°
C5C6C1118.9°119.8°
C5C6H4120.6°120.1°
C5C4C3122.8°119.3°
C6C1C2121.5°120.5°
C1C6H4120.5°120.1°
C6C1H1119.3°119.8°
C4C3C2117.3°119.8°
C4C3H3121.4°120.1°
C3C2C1121.3°120.6°
C2C3H3121.4°120.1°
C3C2H2119.4°119.7°
C2C1H1119.3°119.7°
C1C2H2119.3°119.7°
O1C12C10118.5°120.0°
O1C12O2125.8°120.0°
C10C12O2115.5°120.0°
C12C10S1102.1°109.5°
C12C10H9107.7°109.5°
C12O2H13109.5°117.0°
S1C10H9105.1°109.5°
H10C11H11109.5°109.5°
H10C11H12109.4°109.5°
H11C11H12109.5°109.4°
H7C9H8109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C8C9C10H7120.5°120.0°
C8C9C10H8120.5°120.0°
C9C8C7C5178.4°179.7°
C9C8C7N1177.2°179.9°
C9C8C5C63.0°0.3°
C9C8C5C4177.8°179.7°
C8C9C10C12173.6°175.0°
C8C9C10S165.5°65.0°
C9C8C7H62.8°0.5°
C8C9H7H8118.5°119.9°
C8C9C10H952.3°55.0°
C9C10S1C1126.8°175.0°
C10C9C8C773.6°95.0°
C10C9C8C5108.4°84.6°
C9C10C12O1107.7°30.0°
C9C10C12S1128.2°120.0°
C9C10C12H9121.4°120.0°
C9C10C12O276.5°150.0°
C9C10S1H9119.3°120.0°
C10C9H7H8118.5°120.0°
C11S1C10C12101.7°65.0°
S1C11H10H11120.0°120.0°
S1C11H10H12120.0°120.0°
S1C11H11H12120.0°119.9°
C11S1C10H9146.1°55.0°
C8C7N1H6180.0°179.6°
C8C7N1C41.3°0.4°
C7C8C5C6178.7°180.0°
C7C8C5C40.6°0.0°
C7C8C9H746.9°25.0°
C7C8C9H8165.9°145.0°
C8C7N1H5178.7°180.0°
C5C8C7N11.2°0.3°
C8C5C4N10.1°0.2°
C8C5C6C4179.2°180.0°
C8C5C6C1177.9°180.0°
C8C5C4C3179.7°180.0°
C8C5C6H42.1°0.0°
C5C8C7H6178.8°179.8°
C5C8C9H7131.1°155.3°
C5C8C9H812.1°35.4°
C7N1C4H5180.0°179.7°
C7N1C4C50.9°0.3°
C7N1C4C3179.0°179.9°
N1C4C5C6179.6°179.8°
N1C4C5C3179.9°179.8°
N1C4C3C2177.7°179.7°
C4N1C7H6178.7°180.0°
N1C4C3H32.3°0.3°
C5C6C1H4180.0°180.0°
C6C5C4C30.3°0.0°
C5C6C1C21.2°0.0°
C5C6C1H1178.8°180.0°
C4C5C6C11.4°0.0°
C5C4C3C22.2°0.0°
C4C5C6H4178.6°180.0°
C5C4N1H5179.1°180.0°
C5C4C3H3177.8°180.0°
C6C1C2C30.8°0.0°
C6C1C2H1180.0°180.0°
C6C1C2H2179.2°180.0°
C4C3C2H3180.0°180.0°
C4C3C2C12.4°0.0°
C3C4N1H51.0°0.2°
C4C3C2H2177.5°180.0°
C3C2C1H2180.0°180.0°
C3C2C1H1179.2°180.0°
C2C1C6H4178.9°180.0°
C1C2C3H3177.6°180.0°
O1C12C10O2175.8°179.9°
O1C12C10S120.5°90.0°
O1C12C10H9130.8°150.0°
O1C12O2H130.0°0.1°
C12C10S1H9112.3°120.0°
C12C10C9H766.0°65.0°
C12C10C9H853.1°55.0°
C10C12O2H13175.4°180.0°
O2C12C10S1155.3°90.0°
O2C12C10H944.9°30.0°
C10S1C11H10180.0°60.0°
C10S1C11H1160.0°60.0°
C10S1C11H1260.0°180.0°
S1C10C9H754.9°55.0°
S1C10C9H8174.0°175.0°
H4C6C1H11.1°0.0°
H10C11H11H12120.0°120.0°
H6C7N1H51.3°0.4°
H7C9C10H9172.7°175.0°
H8C9C10H968.2°65.0°
H3C3C2H22.4°0.0°
H1C1C2H20.8°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon