Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

D8B

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C6C3sing1.51Å1.51Å
C3C4doub1.38Å1.41ÅAromatic
C3N1sing1.32Å1.34ÅAromatic
C4C5sing1.39Å1.41ÅAromatic
N1C2doub1.33Å1.35ÅAromatic
C5C1doub1.38Å1.41ÅAromatic
C2C1sing1.40Å1.41ÅAromatic
C2C7sing1.43Å1.45Å
C7C8trip1.17Å1.22Å
C8C9sing1.43Å1.45Å
C15O1sing1.43Å1.50Å
C9C14doub1.40Å1.41ÅAromatic
C9C10sing1.40Å1.41ÅAromatic
C14C13sing1.38Å1.41ÅAromatic
C10C11doub1.38Å1.41ÅAromatic
C13O1sing1.36Å1.36Å
C13C12doub1.39Å1.41ÅAromatic
C11C12sing1.38Å1.41ÅAromatic
C1H1sing1.08Å1.08Å
C11H2sing1.08Å1.08Å
C12H3sing1.08Å1.08Å
C14H4sing1.08Å1.08Å
C15H5sing1.09Å1.10Å
C15H6sing1.09Å1.10Å
C15H7sing1.09Å1.10Å
C4H8sing1.08Å1.08Å
C5H9sing1.08Å1.08Å
C6H10sing1.09Å1.10Å
C6H11sing1.09Å1.10Å
C6H12sing1.09Å1.10Å
C10H13sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6C3C4121.2°119.5°
C6C3N1116.2°119.6°
C3C6H10109.5°109.5°
C3C6H11109.5°109.5°
C3C6H12109.5°109.5°
C4C3N1122.6°120.9°
C3C4C5118.7°119.4°
C3C4H8120.6°120.3°
C3N1C2118.7°121.6°
C4C5C1118.8°118.6°
C5C4H8120.6°120.3°
C4C5H9120.6°120.8°
N1C2C1123.0°120.5°
N1C2C7116.8°119.7°
C5C1C2118.2°119.0°
C5C1H1120.9°120.5°
C1C5H9120.6°120.7°
C1C2C7120.2°119.8°
C2C1H1120.9°120.5°
C2C7C8178.3°180.0°
C7C8C9179.5°180.0°
C8C9C14119.7°120.1°
C8C9C10120.1°120.1°
C15O1C13108.8°117.0°
O1C15H5109.5°109.5°
O1C15H6109.4°109.5°
O1C15H7109.5°109.5°
C14C9C10120.2°119.8°
C9C14C13119.5°119.8°
C9C14H4120.2°120.1°
C9C10C11120.2°119.9°
C9C10H13119.9°120.1°
C14C13O1120.0°120.0°
C14C13C12120.4°120.0°
C13C14H4120.2°120.1°
C10C11C12119.6°120.2°
C10C11H2120.2°119.9°
C11C10H13119.9°120.0°
O1C13C12119.6°120.0°
C13C12C11120.1°120.3°
C13C12H3120.0°119.9°
C12C11H2120.2°119.9°
C11C12H3119.9°119.9°
H5C15H6109.5°109.5°
H5C15H7109.5°109.5°
H6C15H7109.5°109.4°
H10C6H11109.5°109.4°
H10C6H12109.4°109.5°
H11C6H12109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6C3C4N1180.0°179.7°
C6C3C4C5180.0°180.0°
C6C3N1C2179.9°180.0°
C6C3C4H80.0°0.3°
C3C6H10H11120.0°120.0°
C3C6H10H12120.0°120.0°
C3C6H11H12120.0°120.0°
C3C4C5H8180.0°179.7°
C4C3N1C20.1°0.4°
C3C4C5C10.1°0.0°
C3C4C5H9179.9°180.0°
C4C3C6H10180.0°90.1°
C4C3C6H1160.0°150.0°
C4C3C6H1260.0°30.0°
N1C3C4C50.0°0.3°
C3N1C2C10.1°0.1°
C3N1C2C7179.9°179.9°
N1C3C4H8180.0°180.0°
N1C3C6H100.0°90.3°
N1C3C6H11120.0°29.7°
N1C3C6H12120.0°149.7°
C4C5C1H9180.0°180.0°
C4C5C1C20.1°0.3°
C4C5C1H1179.9°180.0°
N1C2C1C50.0°0.3°
N1C2C1C7180.0°180.0°
N1C2C7C817.2°126.7°
N1C2C1H1180.0°180.0°
C5C1C2H1180.0°179.7°
C5C1C2C7180.0°179.7°
C1C5C4H8180.0°179.7°
C1C2C7C8162.8°53.3°
C2C1C5H9179.9°179.7°
C2C7C8C944.6°180.0°
C7C2C1H10.0°0.0°
C7C8C9C14104.3°126.7°
C7C8C9C1075.4°53.6°
C8C9C14C10179.7°179.7°
C8C9C14C13179.9°180.0°
C8C9C10C11180.0°179.8°
C8C9C14H40.1°0.1°
C8C9C10H130.0°0.1°
C15O1C13C1445.1°180.0°
C15O1C13C12134.8°0.0°
O1C15H5H6120.0°120.0°
O1C15H5H7120.0°120.0°
O1C15H6H7120.0°120.0°
C9C14C13H4180.0°179.9°
C14C9C10C110.3°0.6°
C9C14C13O1179.9°180.0°
C9C14C13C120.2°0.0°
C14C9C10H13179.7°179.7°
C10C9C14C130.4°0.3°
C9C10C11H13180.0°179.7°
C9C10C11C120.1°0.5°
C9C10C11H2179.9°179.7°
C10C9C14H4179.7°179.8°
C14C13O1C12179.9°180.0°
C14C13C12C110.1°0.0°
C14C13C12H3180.0°180.0°
C10C11C12C130.0°0.2°
C10C11C12H2180.0°179.8°
C10C11C12H3180.0°179.7°
O1C13C12C11179.9°180.0°
O1C13C12H30.1°0.0°
O1C13C14H40.1°0.0°
C13O1C15H5180.0°60.0°
C13O1C15H660.0°60.0°
C13O1C15H760.0°180.0°
C13C12C11H3180.0°180.0°
C13C12C11H2180.0°180.0°
C12C13C14H4179.8°180.0°
C12C11C10H13179.9°179.8°
H1C1C5H90.1°0.0°
H2C11C12H30.0°0.1°
H2C11C10H130.1°0.0°
H5C15H6H7120.0°120.0°
H8C4C5H90.1°0.3°
H10C6H11H12119.9°120.0°

248636

PDB entries from 2026-02-04

PDB statisticsPDBj update infoContact PDBjnumon