D6G

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.58Å
C1	O1	sing	1.43Å	1.43Å
C1	O5	sing	1.43Å	1.47Å
C1	H1	sing	1.09Å	1.10Å
C2	C3	sing	1.53Å	1.56Å
C2	H2	sing	1.09Å	1.10Å
C2	H22	sing	1.09Å	1.10Å
C3	C4	sing	1.53Å	1.55Å
C3	O3	sing	1.43Å	1.42Å
C3	H3	sing	1.09Å	1.10Å
C4	C5	sing	1.53Å	1.60Å
C4	O4	sing	1.43Å	1.43Å
C4	H4	sing	1.09Å	1.10Å
C5	C6	sing	1.53Å	1.50Å
C5	O5	sing	1.43Å	1.45Å
C5	H5	sing	1.09Å	1.10Å
C6	O6	sing	1.43Å	1.40Å
C6	H61	sing	1.09Å	1.10Å
C6	H62	sing	1.09Å	1.10Å
O1	HO1	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
O6	P	sing	1.61Å	1.63Å
P	O1P	doub	1.48Å	1.51Å
P	O2P	sing	1.61Å	1.49Å
P	O3P	sing	1.61Å	1.53Å
O2P	HOP2	sing	0.97Å	0.95Å
O3P	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O1	114.1°	109.5°
C2	C1	O5	110.0°	109.4°
C2	C1	H1	106.6°	109.5°
C1	C2	C3	111.8°	109.2°
C1	C2	H2	108.9°	109.5°
C1	C2	H22	108.9°	109.5°
O1	C1	O5	109.7°	109.5°
O1	C1	H1	108.3°	109.5°
C1	O1	HO1	109.5°	114.1°
O5	C1	H1	107.9°	109.5°
C1	O5	C5	117.4°	114.1°
C3	C2	H2	108.9°	109.5°
C3	C2	H22	108.9°	109.6°
C2	C3	C4	111.4°	109.0°
C2	C3	O3	112.6°	109.5°
C2	C3	H3	107.6°	109.5°
H2	C2	H22	109.5°	109.5°
C4	C3	O3	108.1°	109.6°
C4	C3	H3	107.7°	109.5°
C3	C4	C5	110.4°	109.2°
C3	C4	O4	107.4°	109.5°
C3	C4	H4	108.9°	109.5°
O3	C3	H3	109.3°	109.6°
C3	O3	HO3	109.5°	114.0°
C5	C4	O4	111.3°	109.5°
C5	C4	H4	108.3°	109.5°
C4	C5	C6	111.4°	109.5°
C4	C5	O5	110.3°	109.4°
C4	C5	H5	108.5°	109.5°
O4	C4	H4	110.6°	109.6°
C4	O4	HO4	109.5°	114.1°
C6	C5	O5	106.6°	109.4°
C6	C5	H5	109.7°	109.5°
C5	C6	O6	110.6°	109.5°
C5	C6	H61	109.2°	109.5°
C5	C6	H62	109.2°	109.5°
O5	C5	H5	110.5°	109.5°
O6	C6	H61	109.2°	109.5°
O6	C6	H62	109.2°	109.5°
C6	O6	P	124.6°	123.0°
H61	C6	H62	109.5°	109.4°
O6	P	O1P	105.3°	109.5°
O6	P	O2P	108.9°	109.5°
O6	P	O3P	102.1°	109.5°
O1P	P	O2P	109.5°	109.5°
O1P	P	O3P	118.0°	109.5°
O2P	P	O3P	112.2°	109.5°
P	O2P	HOP2	109.5°	114.0°
P	O3P	HOP3	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O1	O5	124.0°	119.9°
C2	C1	O1	H1	118.5°	120.1°
C2	C1	O5	H1	115.9°	120.0°
C1	C2	C3	H2	120.3°	119.9°
C1	C2	C3	H22	120.3°	119.9°
C1	C2	H2	H22	118.9°	120.1°
C1	C2	C3	C4	52.3°	57.0°
C1	C2	C3	O3	174.0°	176.9°
C1	C2	C3	H3	65.5°	62.9°
C2	C1	O5	C5	55.9°	61.2°
C2	C1	O1	HO1	180.0°	180.0°
O1	C1	O5	H1	117.8°	120.0°
O1	C1	C2	C3	72.5°	62.3°
O1	C1	C2	H2	47.9°	57.6°
O1	C1	C2	H22	167.2°	177.7°
O1	C1	O5	C5	70.4°	58.8°
O5	C1	C2	C3	51.3°	57.6°
O5	C1	C2	H2	171.7°	177.5°
O5	C1	C2	H22	69.0°	62.4°
C1	O5	C5	C4	56.8°	61.2°
C1	O5	C5	C6	177.8°	178.8°
C1	O5	C5	H5	63.1°	58.9°
O5	C1	O1	HO1	56.1°	60.1°
H1	C1	C2	C3	168.0°	177.6°
H1	C1	C2	H2	71.6°	62.5°
H1	C1	C2	H22	47.7°	57.6°
H1	C1	O5	C5	171.7°	178.8°
H1	C1	O1	HO1	61.5°	59.9°
C3	C2	H2	H22	118.9°	120.2°
C2	C3	C4	O3	124.2°	119.8°
C2	C3	C4	H3	117.8°	119.9°
C2	C3	O3	H3	119.6°	120.2°
C2	C3	C4	C5	52.3°	57.0°
C2	C3	C4	O4	173.8°	176.9°
C2	C3	C4	H4	66.4°	62.9°
C2	C3	O3	HO3	180.0°	60.1°
H2	C2	C3	C4	172.6°	176.9°
H2	C2	C3	O3	65.7°	63.3°
H2	C2	C3	H3	54.8°	57.0°
H22	C2	C3	C4	68.0°	62.9°
H22	C2	C3	O3	53.6°	56.9°
H22	C2	C3	H3	174.2°	177.2°
C4	C3	O3	H3	116.9°	120.2°
C3	C4	C5	O4	119.1°	119.9°
C3	C4	C5	H4	119.1°	119.9°
C3	C4	O4	H4	118.7°	120.2°
C3	C4	C5	C6	170.9°	177.6°
C3	C4	C5	O5	52.8°	57.6°
C3	C4	C5	H5	68.3°	62.4°
C4	C3	O3	HO3	56.5°	179.6°
C3	C4	O4	HO4	180.0°	60.0°
O3	C3	C4	C5	176.5°	176.8°
O3	C3	C4	O4	62.0°	63.3°
O3	C3	C4	H4	57.8°	57.0°
H3	C3	C4	C5	65.5°	62.9°
H3	C3	C4	O4	56.0°	57.1°
H3	C3	C4	H4	175.8°	177.3°
H3	C3	O3	HO3	60.5°	60.1°
C5	C4	O4	H4	120.4°	120.1°
C4	C5	C6	O5	120.3°	119.9°
C4	C5	C6	H5	120.1°	120.1°
C4	C5	O5	H5	119.9°	120.0°
C4	C5	C6	O6	165.1°	175.0°
C4	C5	C6	H61	45.0°	55.0°
C4	C5	C6	H62	74.8°	64.9°
C5	C4	O4	HO4	59.1°	179.7°
O4	C4	C5	C6	69.9°	62.5°
O4	C4	C5	O5	172.0°	177.5°
O4	C4	C5	H5	50.9°	57.5°
H4	C4	C5	C6	51.9°	57.7°
H4	C4	C5	O5	66.2°	62.3°
H4	C4	C5	H5	172.6°	177.7°
H4	C4	O4	HO4	61.3°	60.2°
C6	C5	O5	H5	119.1°	120.0°
C5	C6	O6	H61	120.1°	120.0°
C5	C6	O6	H62	120.1°	120.1°
C5	C6	H61	H62	119.5°	120.0°
C5	C6	O6	P	168.4°	180.0°
O5	C5	C6	O6	74.6°	65.1°
O5	C5	C6	H61	165.3°	174.9°
O5	C5	C6	H62	45.5°	55.0°
H5	C5	C6	O6	45.0°	54.9°
H5	C5	C6	H61	75.1°	65.1°
H5	C5	C6	H62	165.2°	175.0°
O6	C6	H61	H62	119.5°	120.0°
C6	O6	P	O1P	62.3°	55.0°
C6	O6	P	O2P	179.6°	65.0°
C6	O6	P	O3P	61.6°	175.0°
H61	C6	O6	P	48.3°	60.0°
H62	C6	O6	P	71.4°	60.0°
O6	P	O1P	O2P	116.9°	120.0°
O6	P	O1P	O3P	113.1°	120.0°
O6	P	O2P	O3P	112.3°	120.0°
O6	P	O2P	HOP2	114.6°	60.0°
O6	P	O3P	HOP3	114.9°	180.0°
O1P	P	O2P	O3P	133.1°	120.0°
O1P	P	O2P	HOP2	0.0°	180.0°
O1P	P	O3P	HOP3	0.0°	60.0°
O2P	P	O3P	HOP3	128.7°	60.0°
O3P	P	O2P	HOP2	133.1°	60.0°

Definition date:	1999-07-08
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	2PRI