D5G
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| CAK | CAI | sing | 1.38Å | 1.40Å | Aromatic |
| CAK | CAV | doub | 1.39Å | 1.40Å | Aromatic |
| CAK | HAK | sing | 1.08Å | 1.08Å | |
| CAI | CAH | doub | 1.38Å | 1.41Å | Aromatic |
| CAI | HAI | sing | 1.08Å | 1.08Å | |
| CAH | CAJ | sing | 1.38Å | 1.42Å | Aromatic |
| CAH | HAH | sing | 1.08Å | 1.08Å | |
| CAJ | CAL | doub | 1.38Å | 1.40Å | Aromatic |
| CAJ | HAJ | sing | 1.08Å | 1.08Å | |
| CAL | CAV | sing | 1.39Å | 1.41Å | Aromatic |
| CAL | HAL | sing | 1.08Å | 1.08Å | |
| CAV | NAP | sing | 1.40Å | 1.34Å | |
| NAP | CAU | sing | 1.35Å | 1.36Å | |
| NAP | HAP | sing | 0.97Å | 1.00Å | |
| CAU | SAG | doub | 1.71Å | 1.67Å | |
| CAU | N | sing | 1.35Å | 1.35Å | |
| N | CA | sing | 1.46Å | 1.47Å | |
| N | HN | sing | 0.97Å | 1.00Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| CA | C | sing | 1.51Å | 1.55Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | CG | sing | 1.53Å | 1.51Å | |
| CB | HB1 | sing | 1.09Å | 1.10Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CG | CD2 | sing | 1.53Å | 1.56Å | |
| CG | CD1 | sing | 1.53Å | 1.50Å | |
| CG | HG | sing | 1.09Å | 1.10Å | |
| CD2 | HD21 | sing | 1.09Å | 1.10Å | |
| CD2 | HD22 | sing | 1.09Å | 1.10Å | |
| CD2 | HD23 | sing | 1.09Å | 1.10Å | |
| CD1 | HD11 | sing | 1.09Å | 1.10Å | |
| CD1 | HD12 | sing | 1.09Å | 1.10Å | |
| CD1 | HD13 | sing | 1.09Å | 1.10Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| C | NAQ | sing | 1.35Å | 1.33Å | |
| NAQ | CAZ | sing | 1.46Å | 1.46Å | |
| NAQ | HAQ | sing | 0.97Å | 1.00Å | |
| CAZ | CAX | sing | 1.54Å | 1.52Å | |
| CAZ | CAN | sing | 1.55Å | 1.57Å | |
| CAZ | HAZ | sing | 1.09Å | 1.10Å | |
| CAX | OAF | sing | 1.43Å | 1.40Å | |
| CAX | HAX1 | sing | 1.09Å | 1.10Å | |
| CAX | HAX2 | sing | 1.09Å | 1.10Å | |
| OAF | CAM | sing | 1.44Å | 4.16Å | |
| CAN | CAM | sing | 1.55Å | 1.53Å | |
| CAN | HAN1 | sing | 1.09Å | 1.10Å | |
| CAN | HAN2 | sing | 1.09Å | 1.10Å | |
| CAM | OAE | sing | 1.43Å | 1.43Å | |
| CAM | HAM | sing | 1.09Å | 1.10Å | |
| OAE | HAE | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CAI | CAK | CAV | 118.1° | 120.0° |
| CAI | CAK | HAK | 121.0° | 120.0° |
| CAK | CAI | CAH | 121.6° | 120.0° |
| CAK | CAI | HAI | 119.2° | 120.0° |
| CAV | CAK | HAK | 120.9° | 120.1° |
| CAK | CAV | CAL | 121.2° | 119.8° |
| CAK | CAV | NAP | 119.1° | 120.1° |
| CAH | CAI | HAI | 119.2° | 120.0° |
| CAI | CAH | CAJ | 120.2° | 120.1° |
| CAI | CAH | HAH | 119.9° | 119.9° |
| CAJ | CAH | HAH | 119.9° | 120.0° |
| CAH | CAJ | CAL | 118.3° | 120.1° |
| CAH | CAJ | HAJ | 120.8° | 119.9° |
| CAL | CAJ | HAJ | 120.8° | 120.0° |
| CAJ | CAL | CAV | 120.6° | 119.9° |
| CAJ | CAL | HAL | 119.7° | 120.1° |
| CAV | CAL | HAL | 119.7° | 120.0° |
| CAL | CAV | NAP | 119.7° | 120.1° |
| CAV | NAP | CAU | 122.8° | 120.0° |
| CAV | NAP | HAP | 118.6° | 120.0° |
| CAU | NAP | HAP | 118.6° | 120.0° |
| NAP | CAU | SAG | 117.7° | 120.0° |
| NAP | CAU | N | 125.1° | 120.0° |
| SAG | CAU | N | 117.2° | 120.0° |
| CAU | N | CA | 123.6° | 120.0° |
| CAU | N | HN | 118.2° | 120.0° |
| CA | N | HN | 118.2° | 120.0° |
| N | CA | CB | 109.9° | 109.5° |
| N | CA | C | 112.1° | 109.5° |
| N | CA | HA | 105.6° | 109.5° |
| CB | CA | C | 103.3° | 109.5° |
| CB | CA | HA | 114.1° | 109.5° |
| CA | CB | CG | 113.6° | 109.5° |
| CA | CB | HB1 | 107.2° | 109.5° |
| CA | CB | HB2 | 108.1° | 109.5° |
| C | CA | HA | 112.0° | 109.4° |
| CA | C | O | 122.9° | 120.0° |
| CA | C | NAQ | 113.4° | 120.0° |
| CG | CB | HB1 | 107.1° | 109.5° |
| CG | CB | HB2 | 108.1° | 109.4° |
| CB | CG | CD2 | 114.6° | 109.5° |
| CB | CG | CD1 | 108.2° | 109.5° |
| CB | CG | HG | 108.3° | 109.4° |
| HB1 | CB | HB2 | 112.8° | 109.5° |
| CD2 | CG | CD1 | 113.4° | 109.5° |
| CD2 | CG | HG | 102.4° | 109.5° |
| CG | CD2 | HD21 | 109.4° | 109.5° |
| CG | CD2 | HD22 | 109.5° | 109.5° |
| CG | CD2 | HD23 | 109.5° | 109.5° |
| CD1 | CG | HG | 109.7° | 109.4° |
| CG | CD1 | HD11 | 109.5° | 109.4° |
| CG | CD1 | HD12 | 109.5° | 109.5° |
| CG | CD1 | HD13 | 109.5° | 109.5° |
| HD21 | CD2 | HD22 | 109.5° | 109.4° |
| HD21 | CD2 | HD23 | 109.4° | 109.5° |
| HD22 | CD2 | HD23 | 109.5° | 109.5° |
| HD11 | CD1 | HD12 | 109.5° | 109.5° |
| HD11 | CD1 | HD13 | 109.5° | 109.4° |
| HD12 | CD1 | HD13 | 109.4° | 109.5° |
| O | C | NAQ | 123.7° | 120.0° |
| C | NAQ | CAZ | 120.8° | 120.0° |
| C | NAQ | HAQ | 119.6° | 120.0° |
| CAZ | NAQ | HAQ | 119.6° | 120.0° |
| NAQ | CAZ | CAX | 105.0° | 110.9° |
| NAQ | CAZ | CAN | 113.4° | 110.8° |
| NAQ | CAZ | HAZ | 112.2° | 110.7° |
| CAX | CAZ | CAN | 115.4° | 102.4° |
| CAX | CAZ | HAZ | 110.0° | 110.9° |
| CAZ | CAX | OAF | 107.4° | 107.6° |
| CAZ | CAX | HAX1 | 110.6° | 109.8° |
| CAZ | CAX | HAX2 | 110.2° | 109.8° |
| CAN | CAZ | HAZ | 101.0° | 110.8° |
| CAZ | CAN | CAM | 109.8° | 100.8° |
| CAZ | CAN | HAN1 | 109.3° | 111.4° |
| CAZ | CAN | HAN2 | 109.4° | 110.9° |
| OAF | CAX | HAX1 | 110.6° | 109.9° |
| OAF | CAX | HAX2 | 110.2° | 109.8° |
| CAX | OAF | CAM | 70.0° | 110.0° |
| HAX1 | CAX | HAX2 | 107.9° | 109.9° |
| OAF | CAM | CAN | 23.4° | 105.3° |
| OAF | CAM | OAE | 106.4° | 110.3° |
| OAF | CAM | HAM | 150.2° | 110.3° |
| CAM | CAN | HAN1 | 109.3° | 111.1° |
| CAM | CAN | HAN2 | 109.4° | 111.1° |
| CAN | CAM | OAE | 111.1° | 110.4° |
| CAN | CAM | HAM | 145.7° | 110.1° |
| HAN1 | CAN | HAN2 | 109.7° | 111.1° |
| OAE | CAM | HAM | 100.9° | 110.3° |
| CAM | OAE | HAE | 109.5° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CAI | CAK | CAV | HAK | 180.0° | 180.0° |
| CAK | CAI | CAH | HAI | 180.0° | 179.9° |
| CAK | CAI | CAH | CAJ | 0.4° | 0.0° |
| CAK | CAI | CAH | HAH | 179.6° | 180.0° |
| CAI | CAK | CAV | CAL | 0.6° | 0.2° |
| CAI | CAK | CAV | NAP | 178.7° | 180.0° |
| CAV | CAK | CAI | CAH | 0.5° | 0.0° |
| CAV | CAK | CAI | HAI | 179.5° | 179.9° |
| CAK | CAV | CAL | CAJ | 0.6° | 0.5° |
| CAK | CAV | CAL | NAP | 179.3° | 179.7° |
| CAK | CAV | CAL | HAL | 179.3° | 180.0° |
| CAK | CAV | NAP | CAU | 118.1° | 40.4° |
| CAK | CAV | NAP | HAP | 61.9° | 139.6° |
| HAK | CAK | CAI | CAH | 179.5° | 179.9° |
| HAK | CAK | CAI | HAI | 0.5° | 0.0° |
| HAK | CAK | CAV | CAL | 179.4° | 179.8° |
| HAK | CAK | CAV | NAP | 1.3° | 0.1° |
| CAI | CAH | CAJ | HAH | 180.0° | 180.0° |
| CAI | CAH | CAJ | CAL | 0.5° | 0.3° |
| CAI | CAH | CAJ | HAJ | 179.5° | 180.0° |
| HAI | CAI | CAH | CAJ | 179.6° | 179.9° |
| HAI | CAI | CAH | HAH | 0.4° | 0.1° |
| CAH | CAJ | CAL | HAJ | 180.0° | 179.7° |
| CAH | CAJ | CAL | CAV | 0.6° | 0.6° |
| CAH | CAJ | CAL | HAL | 179.4° | 180.0° |
| HAH | CAH | CAJ | CAL | 179.5° | 179.7° |
| HAH | CAH | CAJ | HAJ | 0.5° | 0.0° |
| CAJ | CAL | CAV | HAL | 180.0° | 179.4° |
| CAJ | CAL | CAV | NAP | 178.6° | 179.7° |
| HAJ | CAJ | CAL | CAV | 179.4° | 179.7° |
| HAJ | CAJ | CAL | HAL | 0.6° | 0.3° |
| CAL | CAV | NAP | CAU | 61.2° | 139.9° |
| CAL | CAV | NAP | HAP | 118.8° | 40.1° |
| HAL | CAL | CAV | NAP | 1.4° | 0.3° |
| CAV | NAP | CAU | HAP | 180.0° | 180.0° |
| CAV | NAP | CAU | SAG | 169.2° | 5.6° |
| CAV | NAP | CAU | N | 10.7° | 174.5° |
| NAP | CAU | SAG | N | 179.9° | 180.0° |
| NAP | CAU | N | CA | 177.1° | 176.3° |
| NAP | CAU | N | HN | 2.9° | 3.7° |
| HAP | NAP | CAU | SAG | 10.8° | 174.4° |
| HAP | NAP | CAU | N | 169.3° | 5.6° |
| SAG | CAU | N | CA | 3.0° | 3.7° |
| SAG | CAU | N | HN | 177.0° | 176.4° |
| CAU | N | CA | HN | 180.0° | 180.0° |
| CAU | N | CA | CB | 175.4° | 84.6° |
| CAU | N | CA | C | 70.3° | 155.4° |
| CAU | N | CA | HA | 51.9° | 35.5° |
| N | CA | CB | C | 119.8° | 120.0° |
| N | CA | CB | HA | 118.4° | 120.0° |
| N | CA | C | HA | 118.5° | 120.0° |
| N | CA | CB | CG | 55.4° | 179.5° |
| N | CA | CB | HB1 | 173.6° | 60.5° |
| N | CA | CB | HB2 | 64.6° | 59.5° |
| N | CA | C | O | 32.5° | 22.7° |
| N | CA | C | NAQ | 150.2° | 157.2° |
| HN | N | CA | CB | 4.7° | 95.4° |
| HN | N | CA | C | 109.6° | 24.6° |
| HN | N | CA | HA | 128.2° | 144.6° |
| CB | CA | C | HA | 123.2° | 120.0° |
| CA | CB | CG | HB1 | 118.2° | 120.0° |
| CA | CB | CG | HB2 | 120.0° | 120.0° |
| CA | CB | HB1 | HB2 | 118.8° | 120.0° |
| CA | CB | CG | CD2 | 174.7° | 65.8° |
| CA | CB | CG | CD1 | 47.1° | 174.2° |
| CA | CB | CG | HG | 71.7° | 54.2° |
| CB | CA | C | O | 85.7° | 97.3° |
| CB | CA | C | NAQ | 91.5° | 82.8° |
| C | CA | CB | CG | 175.2° | 60.5° |
| C | CA | CB | HB1 | 66.6° | 59.5° |
| C | CA | CB | HB2 | 55.2° | 179.5° |
| CA | C | O | NAQ | 177.0° | 179.9° |
| CA | C | NAQ | CAZ | 176.0° | 178.3° |
| CA | C | NAQ | HAQ | 4.0° | 1.6° |
| HA | CA | CB | CG | 63.0° | 59.5° |
| HA | CA | CB | HB1 | 55.2° | 179.5° |
| HA | CA | CB | HB2 | 177.0° | 60.5° |
| HA | CA | C | O | 151.0° | 142.7° |
| HA | CA | C | NAQ | 31.7° | 37.3° |
| CG | CB | HB1 | HB2 | 118.8° | 120.0° |
| CB | CG | CD2 | CD1 | 124.9° | 120.0° |
| CB | CG | CD2 | HG | 117.0° | 120.0° |
| CB | CG | CD1 | HG | 117.9° | 119.9° |
| CB | CG | CD2 | HD21 | 159.2° | 65.7° |
| CB | CG | CD2 | HD22 | 80.8° | 54.3° |
| CB | CG | CD2 | HD23 | 39.2° | 174.3° |
| CB | CG | CD1 | HD11 | 96.6° | 60.1° |
| CB | CG | CD1 | HD12 | 23.4° | 59.9° |
| CB | CG | CD1 | HD13 | 143.4° | 180.0° |
| HB1 | CB | CG | CD2 | 56.5° | 174.2° |
| HB1 | CB | CG | CD1 | 71.1° | 54.1° |
| HB1 | CB | CG | HG | 170.1° | 65.8° |
| HB2 | CB | CG | CD2 | 65.3° | 54.2° |
| HB2 | CB | CG | CD1 | 167.1° | 65.9° |
| HB2 | CB | CG | HG | 48.3° | 174.2° |
| CD2 | CG | CD1 | HG | 113.8° | 120.0° |
| CG | CD2 | HD21 | HD22 | 120.0° | 120.0° |
| CG | CD2 | HD21 | HD23 | 120.0° | 120.0° |
| CG | CD2 | HD22 | HD23 | 120.0° | 120.1° |
| CD2 | CG | CD1 | HD11 | 135.1° | 60.0° |
| CD2 | CG | CD1 | HD12 | 104.9° | 180.0° |
| CD2 | CG | CD1 | HD13 | 15.1° | 59.9° |
| CD1 | CG | CD2 | HD21 | 76.0° | 174.3° |
| CD1 | CG | CD2 | HD22 | 44.0° | 65.7° |
| CD1 | CG | CD2 | HD23 | 164.1° | 54.3° |
| CG | CD1 | HD11 | HD12 | 120.0° | 120.0° |
| CG | CD1 | HD11 | HD13 | 120.0° | 119.9° |
| CG | CD1 | HD12 | HD13 | 120.0° | 120.1° |
| HG | CG | CD2 | HD21 | 42.1° | 54.3° |
| HG | CG | CD2 | HD22 | 162.2° | 174.3° |
| HG | CG | CD2 | HD23 | 77.8° | 65.7° |
| HG | CG | CD1 | HD11 | 21.3° | 180.0° |
| HG | CG | CD1 | HD12 | 141.3° | 60.0° |
| HG | CG | CD1 | HD13 | 98.7° | 60.1° |
| HD21 | CD2 | HD22 | HD23 | 120.0° | 119.9° |
| HD11 | CD1 | HD12 | HD13 | 120.0° | 119.9° |
| O | C | NAQ | CAZ | 1.2° | 1.8° |
| O | C | NAQ | HAQ | 178.8° | 178.3° |
| C | NAQ | CAZ | HAQ | 180.0° | 179.9° |
| C | NAQ | CAZ | CAX | 114.7° | 89.2° |
| C | NAQ | CAZ | CAN | 118.5° | 157.8° |
| C | NAQ | CAZ | HAZ | 4.8° | 34.4° |
| NAQ | CAZ | CAX | CAN | 125.6° | 118.3° |
| NAQ | CAZ | CAX | HAZ | 120.9° | 123.5° |
| NAQ | CAZ | CAN | HAZ | 120.2° | 123.4° |
| NAQ | CAZ | CAX | OAF | 171.4° | 139.6° |
| NAQ | CAZ | CAX | HAX1 | 67.8° | 20.0° |
| NAQ | CAZ | CAX | HAX2 | 51.4° | 100.9° |
| NAQ | CAZ | CAN | CAM | 72.2° | 152.2° |
| NAQ | CAZ | CAN | HAN1 | 168.0° | 89.8° |
| NAQ | CAZ | CAN | HAN2 | 47.9° | 34.4° |
| HAQ | NAQ | CAZ | CAX | 65.3° | 90.8° |
| HAQ | NAQ | CAZ | CAN | 61.5° | 22.3° |
| HAQ | NAQ | CAZ | HAZ | 175.2° | 145.7° |
| CAX | CAZ | CAN | HAZ | 118.6° | 118.3° |
| CAZ | CAX | OAF | HAX1 | 120.8° | 119.6° |
| CAZ | CAX | OAF | HAX2 | 120.0° | 119.5° |
| CAZ | CAX | HAX1 | HAX2 | 120.6° | 120.9° |
| CAZ | CAX | OAF | CAM | 10.1° | 1.7° |
| CAX | CAZ | CAN | CAM | 166.6° | 33.9° |
| CAX | CAZ | CAN | HAN1 | 46.8° | 151.9° |
| CAX | CAZ | CAN | HAN2 | 73.3° | 83.9° |
| CAN | CAZ | CAX | OAF | 45.8° | 21.3° |
| CAN | CAZ | CAX | HAX1 | 166.6° | 98.3° |
| CAN | CAZ | CAX | HAX2 | 74.2° | 140.8° |
| CAZ | CAN | CAM | OAF | 59.9° | 36.2° |
| CAZ | CAN | CAM | HAN1 | 119.9° | 118.2° |
| CAZ | CAN | CAM | HAN2 | 120.0° | 117.6° |
| CAZ | CAN | HAN1 | HAN2 | 119.9° | 124.2° |
| CAZ | CAN | CAM | OAE | 142.4° | 155.2° |
| CAZ | CAN | CAM | HAM | 59.4° | 82.7° |
| HAZ | CAZ | CAX | OAF | 67.7° | 97.0° |
| HAZ | CAZ | CAX | HAX1 | 53.1° | 143.4° |
| HAZ | CAZ | CAX | HAX2 | 172.3° | 22.5° |
| HAZ | CAZ | CAN | CAM | 48.0° | 84.4° |
| HAZ | CAZ | CAN | HAN1 | 71.8° | 33.5° |
| HAZ | CAZ | CAN | HAN2 | 168.1° | 157.8° |
| OAF | CAX | HAX1 | HAX2 | 120.6° | 120.9° |
| CAX | OAF | CAM | CAN | 72.3° | 24.3° |
| CAX | OAF | CAM | OAE | 177.7° | 143.4° |
| CAX | OAF | CAM | HAM | 26.5° | 94.5° |
| HAX1 | CAX | OAF | CAM | 130.9° | 121.3° |
| HAX2 | CAX | OAF | CAM | 109.9° | 117.8° |
| OAF | CAM | CAN | OAE | 82.5° | 119.1° |
| OAF | CAM | CAN | HAM | 119.3° | 118.9° |
| OAF | CAM | CAN | HAN1 | 60.0° | 154.3° |
| OAF | CAM | CAN | HAN2 | 179.9° | 81.5° |
| OAF | CAM | OAE | HAM | 168.1° | 122.1° |
| OAF | CAM | OAE | HAE | 128.1° | 61.5° |
| CAM | CAN | HAN1 | HAN2 | 119.9° | 124.3° |
| CAN | CAM | OAE | HAM | 167.7° | 121.9° |
| CAN | CAM | OAE | HAE | 103.9° | 177.4° |
| HAN1 | CAN | CAM | OAE | 22.5° | 86.6° |
| HAN1 | CAN | CAM | HAM | 179.3° | 35.4° |
| HAN2 | CAN | CAM | OAE | 97.6° | 37.6° |
| HAN2 | CAN | CAM | HAM | 60.6° | 159.6° |
| HAM | CAM | OAE | HAE | 63.8° | 60.7° |
