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SummaryGeometryRelated PDB entries

D5C

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
FBGCBDsing1.40Å1.33Å
FBECBDsing1.40Å1.38Å
FBFCBDsing1.40Å1.38Å
CBDCBBsing1.51Å1.42Å
CBBCBAdoub1.38Å1.40ÅAromatic
CBBCBCsing1.38Å1.40ÅAromatic
CBACAZsing1.38Å1.40ÅAromatic
CBCCAXdoub1.39Å1.40ÅAromatic
CAZCAYdoub1.38Å1.39ÅAromatic
CAXCAYsing1.39Å1.40ÅAromatic
CAXCAUsing1.48Å1.41Å
CATCAUdoub1.39Å1.38ÅAromatic
CATCASsing1.38Å1.39ÅAromatic
CAUCAVsing1.39Å1.41ÅAromatic
CASCARdoub1.40Å1.40ÅAromatic
CAVCAWdoub1.38Å1.41ÅAromatic
CARCAWsing1.40Å1.39ÅAromatic
CARCAPsing1.48Å1.40Å
OAQCAPdoub1.22Å1.19Å
CAPNAOsing1.35Å1.30Å
NAOCANsing1.47Å1.51Å
CANCALsing1.53Å1.56Å
CALCAKsing1.53Å1.54Å
CAKCAJsing1.53Å1.55Å
CAKNAMsing1.47Å1.46Å
CAJCADsing1.51Å1.40Å
CACCADdoub1.38Å1.38ÅAromatic
CACCABsing1.38Å1.39ÅAromatic
FAICABsing1.35Å1.30Å
CADCAEsing1.38Å1.38ÅAromatic
CABCAAdoub1.39Å1.38ÅAromatic
CAEFAGsing1.35Å1.22Å
CAECAFdoub1.38Å1.39ÅAromatic
CAACAFsing1.38Å1.40ÅAromatic
CAAFAHsing1.35Å1.38Å
CBCH1sing1.08Å1.08Å
CBAH2sing1.08Å1.08Å
CAZH3sing1.08Å1.08Å
CAYH4sing1.08Å1.08Å
CAVH5sing1.08Å1.08Å
CAWH6sing1.08Å1.08Å
CATH7sing1.08Å1.08Å
CASH8sing1.08Å1.08Å
NAOH9sing0.97Å1.00Å
CANH10sing1.09Å1.10Å
CANH11sing1.09Å1.10Å
CALH12sing1.09Å1.10Å
CALH13sing1.09Å1.10Å
CAKH14sing1.09Å1.10Å
NAMH15sing1.01Å1.00Å
NAMH16sing1.01Å1.00Å
CAJH18sing1.09Å1.10Å
CAJH19sing1.09Å1.10Å
CAFH20sing1.08Å1.08Å
CACH21sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
FBGCBDFBE108.9°109.5°
FBGCBDFBF109.0°109.5°
FBGCBDCBB109.2°109.5°
FBECBDFBF109.1°109.5°
FBECBDCBB110.1°109.5°
FBFCBDCBB110.5°109.4°
CBDCBBCBA120.6°120.0°
CBDCBBCBC121.6°120.0°
CBACBBCBC117.8°120.1°
CBBCBACAZ121.2°120.3°
CBBCBAH2119.4°119.8°
CBBCBCCAX121.7°119.9°
CBBCBCH1119.2°120.1°
CBACAZCAY120.2°120.1°
CAZCBAH2119.4°119.8°
CBACAZH3119.9°120.0°
CBCCAXCAY119.4°119.7°
CBCCAXCAU120.4°120.2°
CAXCBCH1119.2°120.0°
CAZCAYCAX119.7°119.9°
CAYCAZH3119.9°119.9°
CAZCAYH4120.2°120.0°
CAYCAXCAU120.1°120.1°
CAXCAYH4120.1°120.1°
CAXCAUCAT119.8°120.0°
CAXCAUCAV122.3°120.0°
CAUCATCAS118.3°120.1°
CATCAUCAV117.9°120.0°
CAUCATH7120.9°120.0°
CATCASCAR124.9°120.0°
CASCATH7120.9°120.0°
CATCASH8117.5°120.0°
CAUCAVCAW123.5°120.1°
CAUCAVH5118.3°120.0°
CASCARCAW117.5°120.0°
CASCARCAP113.1°120.0°
CARCASH8117.6°120.0°
CAVCAWCAR117.9°119.9°
CAWCAVH5118.3°120.0°
CAVCAWH6121.1°120.0°
CAWCARCAP129.1°120.0°
CARCAWH6121.0°120.0°
CARCAPOAQ117.3°120.0°
CARCAPNAO131.5°120.0°
OAQCAPNAO111.0°120.0°
CAPNAOCAN115.0°120.0°
CAPNAOH9122.5°120.0°
NAOCANCAL111.8°109.4°
CANNAOH9122.5°120.0°
NAOCANH10108.9°109.4°
NAOCANH11108.9°109.5°
CANCALCAK115.5°109.5°
CALCANH10108.9°109.5°
CALCANH11108.9°109.5°
CANCALH12108.0°109.5°
CANCALH13108.0°109.5°
CALCAKCAJ111.7°109.5°
CALCAKNAM109.3°109.5°
CAKCALH12108.0°109.5°
CAKCALH13107.9°109.5°
CALCAKH14108.4°109.4°
CAJCAKNAM109.5°109.5°
CAKCAJCAD113.6°109.5°
CAJCAKH14108.4°109.5°
CAKCAJH18108.4°109.5°
CAKCAJH19108.4°109.4°
NAMCAKH14109.5°109.5°
CAKNAMH15109.5°111.0°
CAKNAMH16109.5°111.0°
CAJCADCAC120.3°120.0°
CAJCADCAE121.1°120.0°
CADCAJH18108.4°109.5°
CADCAJH19108.5°109.5°
CADCACCAB120.9°120.0°
CACCADCAE118.7°120.0°
CADCACH21119.5°120.0°
CACCABFAI120.4°120.0°
CACCABCAA120.3°119.9°
CABCACH21119.5°119.9°
FAICABCAA119.3°120.1°
CADCAEFAG119.7°120.0°
CADCAECAF121.1°120.0°
CABCAACAF118.9°120.0°
CABCAAFAH118.5°120.0°
FAGCAECAF119.2°120.0°
CAECAFCAA120.0°120.0°
CAECAFH20120.0°120.0°
CAFCAAFAH122.6°120.0°
CAACAFH20120.0°120.0°
H10CANH11109.5°109.5°
H12CALH13109.5°109.4°
H15NAMH16109.5°111.0°
H18CAJH19109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
FBGCBDFBEFBF118.9°120.0°
FBGCBDFBECBB119.7°120.0°
FBGCBDFBFCBB120.0°120.0°
FBGCBDCBBCBA49.4°120.0°
FBGCBDCBBCBC130.8°59.7°
FBECBDFBFCBB121.1°120.0°
FBECBDCBBCBA70.2°0.1°
FBECBDCBBCBC109.6°179.7°
FBFCBDCBBCBA169.3°120.1°
FBFCBDCBBCBC10.9°60.3°
CBDCBBCBACBC179.8°179.6°
CBDCBBCBACAZ179.9°179.9°
CBDCBBCBCCAX179.5°180.0°
CBDCBBCBCH10.5°0.1°
CBDCBBCBAH20.1°0.1°
CBBCBACAZH2180.0°180.0°
CBACBBCBCCAX0.3°0.3°
CBBCBACAZCAY0.1°0.0°
CBACBBCBCH1179.7°179.7°
CBBCBACAZH3179.9°180.0°
CBCCBBCBACAZ0.1°0.3°
CBBCBCCAXH1180.0°179.9°
CBBCBCCAXCAY0.7°0.1°
CBBCBCCAXCAU179.1°180.0°
CBCCBBCBAH2179.9°179.7°
CBACAZCAYH3180.0°180.0°
CBACAZCAYCAX0.3°0.2°
CBACAZCAYH4179.7°180.0°
CBCCAXCAYCAZ0.6°0.2°
CBCCAXCAYCAU179.8°180.0°
CBCCAXCAUCAT47.6°0.3°
CBCCAXCAUCAV131.2°180.0°
CBCCAXCAYH4179.4°179.9°
CAZCAYCAXH4180.0°179.7°
CAZCAYCAXCAU179.1°179.8°
CAYCAZCBAH2179.9°180.0°
CAYCAXCAUCAT132.6°179.8°
CAYCAXCAUCAV48.6°0.0°
CAYCAXCBCH1179.3°180.0°
CAXCAYCAZH3179.8°179.8°
CAXCAUCATCAV178.8°179.7°
CAXCAUCATCAS179.7°180.0°
CAXCAUCAVCAW179.7°180.0°
CAUCAXCBCH10.9°0.0°
CAUCAXCAYH40.9°0.0°
CAXCAUCAVH50.3°0.0°
CAXCAUCATH70.3°0.0°
CAUCATCASH7180.0°180.0°
CAUCATCASCAR1.9°0.0°
CATCAUCAVCAW0.9°0.3°
CATCAUCAVH5179.1°179.7°
CAUCATCASH8178.2°180.0°
CASCATCAUCAV0.8°0.3°
CATCASCARH8180.0°179.9°
CATCASCARCAW2.8°0.3°
CATCASCARCAP177.7°179.9°
CAUCAVCAWH5180.0°180.0°
CAUCAVCAWCAR1.9°0.0°
CAUCAVCAWH6178.1°180.0°
CAVCAUCATH7179.1°179.7°
CASCARCAWCAV2.6°0.2°
CASCARCAWCAP174.0°179.7°
CASCARCAPOAQ11.3°0.1°
CASCARCAPNAO175.1°180.0°
CASCARCAWH6177.4°179.7°
CARCASCATH7178.1°180.0°
CAVCAWCARH6180.0°180.0°
CAVCAWCARCAP176.6°179.9°
CAWCARCAPOAQ162.9°179.7°
CAWCARCAPNAO10.7°0.3°
CARCAWCAVH5178.1°180.0°
CAWCARCASH8177.2°179.7°
CARCAPOAQNAO174.9°179.9°
CARCAPNAOCAN175.3°179.9°
CAPCARCAWH63.4°0.1°
CAPCARCASH82.3°0.0°
CARCAPNAOH94.7°0.0°
OAQCAPNAOCAN1.3°0.0°
OAQCAPNAOH9178.7°179.9°
CAPNAOCANH9180.0°179.9°
CAPNAOCANCAL88.8°180.0°
CAPNAOCANH1031.5°60.0°
CAPNAOCANH11150.9°60.0°
NAOCANCALH10120.3°119.9°
NAOCANCALH11120.4°120.0°
NAOCANCALCAK170.6°180.0°
NAOCANH10H11119.0°120.0°
NAOCANCALH1249.7°60.0°
NAOCANCALH1368.5°60.0°
CANCALCAKH12120.9°120.0°
CANCALCAKH13120.9°120.0°
CANCALCAKCAJ58.1°175.0°
CANCALCAKNAM179.5°65.0°
CALCANNAOH991.2°0.1°
CALCANH10H11118.9°120.1°
CANCALH12H13117.3°120.0°
CANCALCAKH1461.2°55.0°
CALCAKCAJNAM121.2°120.0°
CALCAKCAJH14119.3°119.9°
CALCAKNAMH14118.6°120.0°
CALCAKCAJCAD175.2°175.0°
CAKCALCANH1069.1°60.0°
CAKCALCANH1150.2°60.1°
CAKCALH12H13117.2°120.0°
CALCAKNAMH15180.0°176.1°
CALCAKNAMH1660.0°60.0°
CALCAKCAJH1864.2°55.0°
CALCAKCAJH1954.6°65.0°
CAJCAKNAMH14118.7°120.0°
CAKCAJCADH18120.6°120.0°
CAKCAJCADH19120.6°120.0°
CAKCAJCADCAC76.8°95.2°
CAKCAJCADCAE103.9°85.0°
CAJCAKCALH1262.8°55.0°
CAJCAKCALH13179.0°65.0°
CAJCAKNAMH1557.4°63.9°
CAJCAKNAMH1662.6°60.0°
CAKCAJH18H19118.1°120.0°
NAMCAKCAJCAD54.0°65.0°
NAMCAKCALH1258.6°175.0°
NAMCAKCALH1359.7°55.0°
CAKNAMH15H16120.0°123.9°
NAMCAKCAJH18174.6°175.0°
NAMCAKCAJH1966.6°55.0°
CAJCADCACCAE179.4°179.7°
CAJCADCACCAB179.3°179.8°
CAJCADCAEFAG1.1°0.1°
CAJCADCAECAF179.8°180.0°
CADCAJCAKH1465.5°55.1°
CADCAJH18H19118.1°120.0°
CAJCADCACH210.7°0.0°
CADCACCABH21180.0°179.8°
CADCACCABFAI178.6°179.8°
CADCACCABCAA1.1°0.5°
CACCADCAEFAG179.5°179.8°
CACCADCAECAF0.8°0.3°
CACCADCAJH1843.8°144.8°
CACCADCAJH19162.6°24.7°
CACCABFAICAA179.8°179.7°
CABCACCADCAE1.3°0.5°
CACCABCAACAF0.4°0.3°
CACCABCAAFAH179.8°179.7°
FAICABCAACAF179.3°180.0°
FAICABCAAFAH0.1°0.0°
FAICABCACH211.4°0.0°
CADCAEFAGCAF178.7°180.0°
CADCAECAFCAA0.1°0.0°
CAECADCAJH18135.5°35.0°
CAECADCAJH1916.7°155.0°
CADCAECAFH20179.8°180.0°
CAECADCACH21178.7°179.7°
CABCAACAFCAE0.1°0.1°
CABCAACAFFAH179.4°180.0°
CABCAACAFH20180.0°180.0°
CAACABCACH21178.8°179.7°
FAGCAECAFCAA178.9°180.0°
FAGCAECAFH201.1°0.0°
CAECAFCAAH20180.0°180.0°
CAECAFCAAFAH179.3°180.0°
FAHCAACAFH200.7°0.0°
H2CBACAZH30.1°0.0°
H3CAZCAYH40.2°0.0°
H5CAVCAWH61.9°0.0°
H7CATCASH81.9°0.1°
H9NAOCANH10148.5°120.0°
H9NAOCANH1129.2°119.9°
H10CANCALH12170.0°180.0°
H10CANCALH1351.8°60.0°
H11CANCALH1270.7°59.9°
H11CANCALH13171.1°179.9°
H12CALCAKH14177.9°65.0°
H13CALCAKH1459.7°175.0°
H14CAKNAMH1561.3°56.1°
H14CAKNAMH16178.6°180.0°
H14CAKCAJH1855.1°65.0°
H14CAKCAJH19173.9°175.1°

248636

PDB entries from 2026-02-04

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