Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

D4Y

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
FC5sing1.35Å1.35Å
C5C6doub1.39Å1.38ÅAromatic
C5C4sing1.38Å1.37ÅAromatic
C6C7sing1.38Å1.39ÅAromatic
C4C3doub1.38Å1.39ÅAromatic
C7Csing1.51Å1.49Å
C7C2doub1.39Å1.37ÅAromatic
C3C2sing1.39Å1.38ÅAromatic
COsing1.43Å1.41Å
CC1sing1.51Å1.53Å
C2Nsing1.40Å1.36Å
NC1sing1.34Å1.35Å
C1O1doub1.21Å1.24Å
C4H4sing1.08Å1.08Å
C6H5sing1.08Å1.08Å
C3H3sing1.08Å1.08Å
CH1sing1.09Å1.10Å
OHsing0.97Å0.95Å
NH2sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
FC5C6119.0°120.1°
FC5C4119.7°120.1°
C6C5C4121.3°119.7°
C5C6C7118.1°119.9°
C5C6H5121.0°120.0°
C5C4C3120.7°120.4°
C5C4H4119.6°119.8°
C6C7C130.5°132.9°
C6C7C2120.5°120.8°
C7C6H5121.0°120.0°
C4C3C2117.7°120.1°
C3C4H4119.7°119.8°
C4C3H3121.2°120.0°
CC7C2108.1°106.3°
C7CO116.6°110.5°
C7CC1101.3°104.1°
C7CH1106.4°110.5°
C7C2C3121.7°119.0°
C7C2N109.7°110.2°
C3C2N128.6°130.8°
C2C3H3121.1°119.9°
OCC1118.1°110.5°
OCH1107.4°110.5°
COH109.5°114.0°
CC1N106.5°107.1°
CC1O1126.3°126.4°
C1CH1106.0°110.6°
C2NC1112.5°112.2°
C2NH2123.8°123.9°
NC1O1126.6°126.5°
C1NH2123.8°123.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
FC5C6C4179.8°180.0°
FC5C6C7178.7°179.9°
FC5C4C3179.5°179.6°
FC5C4H40.6°0.0°
FC5C6H51.3°0.0°
C5C6C7H5180.0°180.0°
C6C5C4C30.4°0.3°
C5C6C7C170.4°180.0°
C5C6C7C22.8°0.3°
C6C5C4H4179.6°180.0°
C4C5C6C71.4°0.0°
C5C4C3H4180.0°179.6°
C5C4C3C20.8°0.4°
C4C5C6H5178.6°180.0°
C5C4C3H3179.2°180.0°
C6C7CC2168.8°179.7°
C6C7C2C32.4°0.2°
C6C7CO49.0°61.0°
C6C7CC1178.6°179.7°
C6C7C2N177.4°179.8°
C6C7CH170.8°61.5°
C4C3C2C70.5°0.1°
C4C3C2H3180.0°179.6°
C4C3C2N179.2°179.9°
CC7C2C3172.5°180.0°
C7COC1121.0°114.7°
C7COH1119.3°122.6°
C7CC1H1110.9°118.7°
CC7C2N7.3°0.0°
C7CC1N13.8°0.0°
C7CC1O1175.1°180.0°
CC7C6H59.6°0.0°
C7COH180.0°180.0°
C7C2C3N179.7°180.0°
C2C7CO142.2°118.7°
C2C7CC112.6°0.0°
C7C2NC12.4°0.0°
C2C7C6H5177.2°179.7°
C7C2C3H3179.5°179.7°
C2C7CH198.0°118.8°
C7C2NH2177.6°180.0°
C3C2NC1177.9°180.0°
C2C3C4H4179.1°180.0°
C3C2NH22.1°0.0°
OCC1H1120.5°122.7°
OCC1N142.4°118.7°
OCC1O146.5°61.3°
CC1NC210.6°0.0°
CC1NO1171.1°180.0°
C1COH59.0°65.3°
CC1NH2169.4°180.0°
C2NC1H2180.0°180.0°
C2NC1O1178.3°180.0°
NC2C3H30.8°0.3°
NC1CH197.1°118.7°
O1C1CH174.0°61.3°
O1C1NH21.7°0.0°
H4C4C3H30.8°0.4°
H1COH60.8°57.4°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon