Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

D4G

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C3C2sing1.38Å1.42ÅAromatic
C3C4doub1.40Å1.43ÅAromatic
C3H3sing1.08Å1.08Å
C2N_1doub1.32Å1.37ÅAromatic
C2H2sing1.08Å1.08Å
N_1C1sing1.32Å1.37ÅAromatic
C1C5doub1.38Å1.44ÅAromatic
C1H1sing1.08Å1.08Å
C5C4sing1.40Å1.43ÅAromatic
C5H5sing1.08Å1.08Å
C4S_1sing1.76Å1.74Å
S_1S_2sing2.06Å2.07Å
S_2C6sing1.76Å1.75Å
C6C7sing1.40Å1.44ÅAromatic
C6C10doub1.40Å1.44ÅAromatic
C7C8doub1.38Å1.42ÅAromatic
C7H7sing1.08Å1.08Å
C8N_2sing1.32Å1.37ÅAromatic
C8H8sing1.08Å1.08Å
N_2C9doub1.32Å1.37ÅAromatic
C9C10sing1.38Å1.42ÅAromatic
C9H9sing1.08Å1.08Å
C10H10sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C3C4117.6°119.0°
C2C3H3121.2°120.5°
C3C2N_1119.4°120.9°
C3C2H2120.3°119.5°
C4C3H3121.2°120.5°
C3C4C5122.0°118.2°
C3C4S_1119.0°120.9°
N_1C2H2120.3°119.6°
C2N_1C1124.9°122.0°
N_1C1C5118.8°120.8°
N_1C1H1120.6°119.6°
C5C1H1120.6°119.6°
C1C5C4117.2°119.1°
C1C5H5121.4°120.5°
C4C5H5121.4°120.4°
C5C4S_1119.0°120.9°
C4S_1S_2103.2°100.0°
S_1S_2C6109.1°100.0°
S_2C6C7121.5°120.9°
S_2C6C10117.0°120.9°
C7C6C10121.5°118.2°
C6C7C8117.6°119.1°
C6C7H7121.2°120.4°
C6C10C9117.7°119.0°
C6C10H10121.2°120.5°
C8C7H7121.2°120.5°
C7C8N_2118.8°120.8°
C7C8H8120.6°119.6°
N_2C8H8120.6°119.6°
C8N_2C9125.4°122.0°
N_2C9C10118.9°120.9°
N_2C9H9120.5°119.6°
C10C9H9120.6°119.5°
C9C10H10121.1°120.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C3C4H3180.0°180.0°
C3C2N_1H2180.0°180.0°
C3C2N_1C10.0°0.0°
C2C3C4C50.1°0.2°
C2C3C4S_1179.4°180.0°
C4C3C2N_10.0°0.0°
C4C3C2H2179.9°180.0°
C3C4C5C10.0°0.4°
C3C4C5S_1179.5°179.8°
C3C4C5H5180.0°180.0°
C3C4S_1S_225.9°180.0°
H3C3C2N_1179.9°180.0°
H3C3C2H20.1°0.0°
H3C3C4C5179.9°179.8°
H3C3C4S_10.6°0.0°
C2N_1C1C50.1°0.2°
C2N_1C1H1179.9°179.9°
H2C2N_1C1180.0°180.0°
N_1C1C5H1180.0°179.9°
N_1C1C5C40.1°0.4°
N_1C1C5H5179.9°180.0°
C1C5C4H5180.0°179.6°
C1C5C4S_1179.5°179.8°
H1C1C5C4179.9°179.7°
H1C1C5H50.1°0.1°
C5C4S_1S_2153.7°0.3°
H5C5C4S_10.5°0.2°
C4S_1S_2C683.4°85.0°
S_1S_2C6C744.4°0.3°
S_1S_2C6C10135.5°180.0°
S_2C6C7C10179.9°179.8°
S_2C6C7C8179.8°179.8°
S_2C6C7H70.2°0.2°
S_2C6C10C9179.8°180.0°
S_2C6C10H100.2°0.0°
C6C7C8H7180.0°179.6°
C6C7C8N_20.0°0.4°
C6C7C8H8180.0°179.7°
C7C6C10C90.0°0.2°
C7C6C10H10179.9°179.8°
C10C6C7C80.1°0.4°
C10C6C7H7179.9°180.0°
C6C10C9N_20.1°0.0°
C6C10C9H10180.0°180.0°
C6C10C9H9180.0°180.0°
C7C8N_2H8180.0°179.9°
C7C8N_2C90.2°0.2°
H7C7C8N_2180.0°180.0°
H7C7C8H80.0°0.1°
C8N_2C9C100.2°0.0°
C8N_2C9H9179.8°180.0°
H8C8N_2C9179.8°179.9°
N_2C9C10H9180.0°180.0°
N_2C9C10H10179.9°180.0°
H9C9C10H100.0°0.0°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon