D3T

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
PA	O1A	doub	1.50Å	1.49Å
PA	O2A	sing	1.62Å	1.49Å
PA	O5'	sing	1.62Å	1.60Å
PA	O3A	sing	1.61Å	1.59Å
O2A	HOA2	sing	0.98Å	0.95Å
O5'	C5'	sing	1.42Å	1.42Å
C5'	C4'	sing	1.52Å	1.52Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.11Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.52Å	1.52Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.43Å	1.42Å
C1'	N1	sing	1.43Å	1.48Å
C1'	C2'	sing	1.52Å	1.53Å
C1'	H1'	sing	1.10Å	1.11Å
N1	C6	sing	1.39Å	1.38Å
N1	C2	sing	1.41Å	1.38Å
C6	C5	doub	1.34Å	1.34Å
C6	H6	sing	1.09Å	1.10Å
C2	O2	doub	1.23Å	1.22Å
C2	N3	sing	1.40Å	1.37Å
N3	C4	sing	1.39Å	1.38Å
N3	HN3	sing	1.02Å	1.02Å
C4	O4	doub	1.23Å	1.23Å
C4	C5	sing	1.49Å	1.45Å
C5	C5M	sing	1.50Å	1.50Å
C5M	H5M1	sing	1.09Å	1.11Å
C5M	H5M2	sing	1.09Å	1.11Å
C5M	H5M3	sing	1.09Å	1.12Å
C2'	C3'	sing	1.51Å	1.53Å
C2'	H2'1	sing	1.10Å	1.12Å
C2'	H2'2	sing	1.09Å	1.11Å
C3'	H3'1	sing	1.10Å	1.11Å
C3'	H3'2	sing	1.09Å	1.12Å
O3A	PB	sing	1.62Å	1.59Å
PB	O1B	doub	1.50Å	1.48Å
PB	O2B	sing	1.62Å	1.48Å
PB	O3B	sing	1.61Å	1.60Å
O2B	HOB2	sing	0.98Å	0.95Å
O3B	PG	sing	1.60Å	1.60Å
PG	O1G	doub	1.45Å	1.49Å
PG	O2G	sing	1.60Å	1.48Å
PG	O3G	sing	1.60Å	1.52Å
O3G	HOG3	sing	0.98Å	0.95Å
HO1	O2G	sing	0.98Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1A	PA	O2A	120.0°	114.2°
O1A	PA	O5'	106.5°	114.1°
O1A	PA	O3A	109.4°	115.1°
O2A	PA	O5'	110.9°	104.0°
O2A	PA	O3A	109.5°	103.5°
PA	O2A	HOA2	120.0°	118.9°
O5'	PA	O3A	98.4°	104.7°
PA	O5'	C5'	121.4°	120.0°
PA	O3A	PB	126.9°	131.9°
O5'	C5'	C4'	110.2°	109.0°
O5'	C5'	H5'1	112.0°	108.8°
O5'	C5'	H5'2	111.9°	108.8°
C4'	C5'	H5'1	111.9°	110.5°
C4'	C5'	H5'2	111.9°	110.6°
C5'	C4'	O4'	109.8°	108.4°
C5'	C4'	C3'	115.5°	113.1°
C5'	C4'	H4'	103.4°	108.9°
H5'1	C5'	H5'2	98.5°	109.1°
O4'	C4'	C3'	103.9°	106.5°
O4'	C4'	H4'	115.2°	108.7°
C4'	O4'	C1'	109.6°	108.9°
C3'	C4'	H4'	109.4°	111.2°
C4'	C3'	C2'	102.1°	102.7°
C4'	C3'	H3'1	115.0°	109.5°
C4'	C3'	H3'2	115.0°	113.7°
O4'	C1'	N1	109.2°	109.4°
O4'	C1'	C2'	107.4°	106.9°
O4'	C1'	H1'	112.2°	108.1°
N1	C1'	C2'	112.9°	112.9°
N1	C1'	H1'	106.7°	108.0°
C1'	N1	C6	121.5°	118.4°
C1'	N1	C2	117.5°	121.2°
C2'	C1'	H1'	108.5°	111.4°
C1'	C2'	C3'	101.7°	101.9°
C1'	C2'	H2'1	115.2°	111.0°
C1'	C2'	H2'2	115.2°	112.8°
C6	N1	C2	121.0°	120.4°
N1	C6	C5	123.6°	124.4°
N1	C6	H6	119.7°	114.8°
N1	C2	O2	123.3°	123.9°
N1	C2	N3	114.8°	115.0°
C5	C6	H6	116.7°	120.8°
C6	C5	C4	118.0°	118.4°
C6	C5	C5M	123.0°	123.6°
O2	C2	N3	122.0°	121.1°
C2	N3	C4	127.5°	127.0°
C2	N3	HN3	115.8°	116.5°
C4	N3	HN3	116.6°	116.5°
N3	C4	O4	119.7°	123.6°
N3	C4	C5	115.1°	114.8°
O4	C4	C5	125.1°	121.7°
C4	C5	C5M	119.0°	118.0°
C5	C5M	H5M1	107.4°	109.7°
C5	C5M	H5M2	123.0°	109.7°
C5	C5M	H5M3	107.4°	109.7°
H5M1	C5M	H5M2	107.4°	109.3°
H5M1	C5M	H5M3	102.4°	109.4°
H5M2	C5M	H5M3	107.4°	108.9°
C3'	C2'	H2'1	115.2°	109.7°
C3'	C2'	H2'2	115.2°	113.6°
C2'	C3'	H3'1	115.0°	109.2°
C2'	C3'	H3'2	115.0°	113.6°
H2'1	C2'	H2'2	95.3°	107.7°
H3'1	C3'	H3'2	95.5°	108.0°
O3A	PB	O1B	107.8°	115.0°
O3A	PB	O2B	109.3°	104.0°
O3A	PB	O3B	99.2°	101.8°
O1B	PB	O2B	119.7°	114.9°
O1B	PB	O3B	108.4°	115.6°
O2B	PB	O3B	110.4°	103.8°
PB	O2B	HOB2	109.3°	119.0°
PB	O3B	PG	122.6°	131.3°
O3B	PG	O1G	108.9°	108.3°
O3B	PG	O2G	108.6°	111.6°
O3B	PG	O3G	98.4°	112.0°
O1G	PG	O2G	119.4°	107.5°
O1G	PG	O3G	106.5°	107.7°
O2G	PG	O3G	112.9°	109.5°
PG	O2G	HO1	109.5°	119.4°
PG	O3G	HOG3	98.4°	119.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1A	PA	O2A	O5'	124.8°	125.0°
O1A	PA	O2A	O3A	127.6°	125.9°
O1A	PA	O5'	O3A	113.2°	126.6°
O1A	PA	O2A	HOA2	180.0°	45.8°
O1A	PA	O5'	C5'	166.4°	180.0°
O1A	PA	O3A	PB	123.6°	60.0°
O2A	PA	O5'	O3A	114.7°	108.3°
O2A	PA	O5'	C5'	34.2°	54.9°
O2A	PA	O3A	PB	9.8°	65.4°
O5'	PA	O2A	HOA2	55.1°	170.8°
PA	O5'	C5'	C4'	135.2°	180.0°
PA	O5'	C5'	H5'1	99.5°	59.4°
PA	O5'	C5'	H5'2	9.9°	59.4°
O5'	PA	O3A	PB	125.6°	174.0°
O3A	PA	O2A	HOA2	52.4°	80.0°
O3A	PA	O5'	C5'	80.5°	53.4°
PA	O3A	PB	O1B	166.7°	60.1°
PA	O3A	PB	O2B	35.1°	66.4°
PA	O3A	PB	O3B	80.5°	174.1°
O5'	C5'	C4'	H5'1	125.3°	119.5°
O5'	C5'	C4'	H5'2	125.3°	119.6°
O5'	C5'	H5'1	H5'2	117.9°	118.5°
O5'	C5'	C4'	O4'	57.9°	61.7°
O5'	C5'	C4'	C3'	59.1°	179.6°
O5'	C5'	C4'	H4'	178.7°	56.3°
C4'	C5'	H5'1	H5'2	117.8°	121.8°
C5'	C4'	O4'	C3'	124.1°	121.9°
C5'	C4'	O4'	H4'	116.3°	118.2°
C5'	C4'	C3'	H4'	116.2°	122.9°
C5'	C4'	O4'	C1'	147.5°	111.7°
C5'	C4'	C3'	C2'	157.6°	89.8°
C5'	C4'	C3'	H3'1	77.1°	154.3°
C5'	C4'	C3'	H3'2	32.4°	33.3°
H5'1	C5'	C4'	O4'	67.4°	57.8°
H5'1	C5'	C4'	C3'	175.6°	60.0°
H5'1	C5'	C4'	H4'	56.0°	175.8°
H5'2	C5'	C4'	O4'	176.8°	178.7°
H5'2	C5'	C4'	C3'	66.1°	60.9°
H5'2	C5'	C4'	H4'	53.4°	63.3°
O4'	C4'	C3'	H4'	123.5°	118.2°
C4'	O4'	C1'	N1	122.5°	135.5°
C4'	O4'	C1'	C2'	0.3°	12.9°
C4'	O4'	C1'	H1'	119.5°	107.2°
O4'	C4'	C3'	C2'	37.3°	29.1°
O4'	C4'	C3'	H3'1	162.5°	86.8°
O4'	C4'	C3'	H3'2	88.0°	152.3°
C3'	C4'	O4'	C1'	23.4°	10.3°
C4'	C3'	C2'	C1'	36.5°	35.4°
C4'	C3'	C2'	H3'1	125.3°	116.1°
C4'	C3'	C2'	H3'2	125.3°	123.2°
C4'	C3'	C2'	H2'1	161.8°	82.3°
C4'	C3'	C2'	H2'2	88.7°	157.1°
C4'	C3'	H3'1	H3'2	120.9°	124.3°
H4'	C4'	O4'	C1'	96.3°	130.1°
H4'	C4'	C3'	C2'	86.2°	147.3°
H4'	C4'	C3'	H3'1	39.0°	31.4°
H4'	C4'	C3'	H3'2	148.6°	89.5°
O4'	C1'	N1	C2'	119.5°	119.0°
O4'	C1'	N1	H1'	121.5°	117.4°
O4'	C1'	C2'	H1'	121.5°	117.9°
O4'	C1'	N1	C6	26.5°	32.7°
O4'	C1'	N1	C2	153.9°	147.4°
O4'	C1'	C2'	C3'	23.5°	30.6°
O4'	C1'	C2'	H2'1	148.8°	86.2°
O4'	C1'	C2'	H2'2	101.7°	152.7°
N1	C1'	C2'	H1'	118.0°	121.7°
C1'	N1	C6	C2	179.6°	179.9°
C1'	N1	C6	C5	179.4°	180.0°
C1'	N1	C6	H6	0.6°	0.0°
C1'	N1	C2	O2	0.1°	0.1°
C1'	N1	C2	N3	179.8°	180.0°
N1	C1'	C2'	C3'	97.0°	151.0°
N1	C1'	C2'	H2'1	28.3°	34.2°
N1	C1'	C2'	H2'2	137.8°	86.8°
C2'	C1'	N1	C6	93.0°	86.3°
C2'	C1'	N1	C2	86.6°	93.6°
C1'	C2'	C3'	H2'1	125.2°	117.8°
C1'	C2'	C3'	H2'2	125.3°	121.7°
C1'	C2'	H2'1	H2'2	121.0°	124.0°
C1'	C2'	C3'	H3'1	161.8°	80.7°
C1'	C2'	C3'	H3'2	88.7°	158.7°
H1'	C1'	N1	C6	147.9°	150.1°
H1'	C1'	N1	C2	32.5°	30.0°
H1'	C1'	C2'	C3'	145.0°	87.3°
H1'	C1'	C2'	H2'1	89.7°	155.9°
H1'	C1'	C2'	H2'2	19.8°	34.8°
N1	C6	C5	H6	180.0°	180.0°
C6	N1	C2	O2	179.7°	180.0°
C6	N1	C2	N3	0.2°	0.0°
N1	C6	C5	C4	0.6°	0.0°
N1	C6	C5	C5M	179.1°	180.0°
C2	N1	C6	C5	0.2°	0.0°
C2	N1	C6	H6	179.8°	179.9°
N1	C2	O2	N3	179.9°	180.0°
N1	C2	N3	C4	0.2°	0.0°
N1	C2	N3	HN3	179.8°	180.0°
C6	C5	C4	N3	0.5°	0.0°
C6	C5	C4	O4	179.3°	180.0°
C6	C5	C4	C5M	179.7°	180.0°
C6	C5	C5M	H5M1	54.7°	120.4°
C6	C5	C5M	H5M2	180.0°	0.3°
C6	C5	C5M	H5M3	54.8°	119.4°
H6	C6	C5	C4	179.4°	180.0°
H6	C6	C5	C5M	0.9°	0.0°
O2	C2	N3	C4	179.7°	179.9°
O2	C2	N3	HN3	0.4°	0.0°
C2	N3	C4	HN3	180.0°	179.9°
C2	N3	C4	O4	179.7°	180.0°
C2	N3	C4	C5	0.2°	0.1°
N3	C4	O4	C5	179.9°	180.0°
N3	C4	C5	C5M	179.2°	179.9°
HN3	N3	C4	O4	0.3°	0.0°
HN3	N3	C4	C5	179.8°	180.0°
O4	C4	C5	C5M	1.0°	0.1°
C4	C5	C5M	H5M1	125.0°	59.6°
C4	C5	C5M	H5M2	0.3°	179.7°
C4	C5	C5M	H5M3	125.6°	60.7°
C5	C5M	H5M1	H5M2	134.1°	120.4°
C5	C5M	H5M1	H5M3	112.9°	120.4°
C5	C5M	H5M2	H5M3	125.3°	120.1°
H5M1	C5M	H5M2	H5M3	109.5°	119.5°
C3'	C2'	H2'1	H2'2	121.1°	124.1°
C2'	C3'	H3'1	H3'2	120.8°	124.0°
H2'1	C2'	C3'	H3'1	73.0°	161.5°
H2'1	C2'	C3'	H3'2	36.5°	40.9°
H2'2	C2'	C3'	H3'1	36.5°	41.0°
H2'2	C2'	C3'	H3'2	146.0°	79.6°
O3A	PB	O1B	O2B	125.7°	120.7°
O3A	PB	O1B	O3B	106.6°	118.3°
O3A	PB	O2B	O3B	108.2°	106.2°
O3A	PB	O2B	HOB2	180.0°	79.0°
O3A	PB	O3B	PG	117.2°	65.4°
O1B	PB	O2B	O3B	126.8°	127.2°
O1B	PB	O2B	HOB2	55.0°	47.6°
O1B	PB	O3B	PG	130.4°	60.0°
O2B	PB	O3B	PG	2.5°	173.2°
O3B	PB	O2B	HOB2	71.9°	174.8°
PB	O3B	PG	O1G	46.5°	60.0°
PB	O3B	PG	O2G	85.1°	58.2°
PB	O3B	PG	O3G	157.2°	178.6°
O3B	PG	O1G	O2G	125.5°	120.8°
O3B	PG	O1G	O3G	105.3°	121.3°
O3B	PG	O2G	O3G	108.1°	124.6°
O3B	PG	O3G	HOG3	180.0°	61.8°
O3B	PG	O2G	HO1	32.0°	62.2°
O1G	PG	O2G	O3G	126.3°	116.7°
O1G	PG	O3G	HOG3	67.3°	179.2°
O1G	PG	O2G	HO1	93.7°	179.1°
O2G	PG	O3G	HOG3	65.6°	62.6°
O3G	PG	O2G	HO1	140.1°	62.4°

Definition date:	2004-06-28
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1TK8