Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

D3L

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O18C19sing1.43Å1.41Å
O18C02sing1.36Å1.41Å
C03C02doub1.39Å1.40ÅAromatic
C03C04sing1.38Å1.39ÅAromatic
C02C01sing1.38Å1.40ÅAromatic
C04C05doub1.39Å1.42ÅAromatic
C01C06doub1.40Å1.42ÅAromatic
C05C06sing1.41Å1.37ÅAromatic
C05N09sing1.38Å1.38ÅAromatic
C06C07sing1.42Å1.42ÅAromatic
N09C08sing1.38Å1.34ÅAromatic
C07C08doub1.36Å1.39ÅAromatic
C08C10sing1.47Å1.52Å
C10O11doub1.22Å1.21Å
C10C12sing1.48Å1.52Å
C17C12doub1.40Å1.39ÅAromatic
C17C16sing1.38Å1.39ÅAromatic
C12C13sing1.40Å1.39ÅAromatic
C16C15doub1.38Å1.39ÅAromatic
C13C14doub1.38Å1.39ÅAromatic
C15C14sing1.38Å1.38ÅAromatic
C13H1sing1.08Å1.08Å
C15H2sing1.08Å1.08Å
C17H3sing1.08Å1.08Å
C01H4sing1.08Å1.08Å
C03H5sing1.08Å1.08Å
C04H6sing1.08Å1.08Å
C07H7sing1.08Å1.08Å
N09H8sing0.97Å1.00Å
C14H9sing1.08Å1.08Å
C16H10sing1.08Å1.08Å
C19H11sing1.09Å1.10Å
C19H12sing1.09Å1.10Å
C19H13sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C19O18C02114.7°117.0°
O18C19H11109.5°109.5°
O18C19H12109.5°109.5°
O18C19H13109.4°109.5°
O18C02C03119.3°119.8°
O18C02C01120.7°119.9°
C02C03C04120.0°120.6°
C03C02C01120.0°120.3°
C02C03H5120.0°119.7°
C03C04C05120.0°120.0°
C04C03H5120.0°119.7°
C03C04H6120.0°120.0°
C02C01C06120.1°119.7°
C02C01H4120.0°120.1°
C04C05C06120.2°119.6°
C04C05N09131.3°133.0°
C05C04H6120.0°120.0°
C01C06C05119.7°119.7°
C01C06C07133.6°133.3°
C06C01H4120.0°120.2°
C06C05N09108.5°107.4°
C05C06C07106.6°107.0°
C05N09C08109.7°108.7°
C05N09H8125.2°125.6°
C06C07C08107.1°107.7°
C06C07H7126.5°126.1°
N09C08C07108.1°109.1°
N09C08C10124.4°125.4°
C08N09H8125.1°125.6°
C07C08C10127.5°125.5°
C08C07H7126.5°126.1°
C08C10O11118.9°120.0°
C08C10C12122.2°120.0°
O11C10C12118.9°119.9°
C10C12C17121.1°120.1°
C10C12C13119.3°120.2°
C12C17C16120.1°119.8°
C17C12C13119.6°119.7°
C12C17H3120.0°120.1°
C17C16C15120.0°120.1°
C16C17H3119.9°120.1°
C17C16H10120.0°119.9°
C12C13C14120.3°119.8°
C12C13H1119.8°120.0°
C16C15C14120.1°120.3°
C16C15H2119.9°119.8°
C15C16H10120.0°119.9°
C13C14C15119.9°120.2°
C14C13H1119.9°120.2°
C13C14H9120.1°119.9°
C14C15H2120.0°119.9°
C15C14H9120.1°119.9°
H11C19H12109.4°109.5°
H11C19H13109.5°109.4°
H12C19H13109.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C19O18C02C03143.1°0.0°
C19O18C02C0137.2°180.0°
O18C19H11H12120.0°120.1°
O18C19H11H13120.0°120.0°
O18C19H12H13120.0°120.0°
O18C02C03C01179.8°180.0°
O18C02C03C04179.9°180.0°
O18C02C01C06180.0°180.0°
O18C02C01H40.0°0.3°
O18C02C03H50.1°0.1°
C02O18C19H11180.0°60.0°
C02O18C19H1260.0°180.0°
C02O18C19H1360.0°60.0°
C02C03C04H5180.0°179.9°
C02C03C04C050.2°0.1°
C03C02C01C060.2°0.0°
C03C02C01H4179.8°179.7°
C02C03C04H6179.9°180.0°
C04C03C02C010.1°0.0°
C03C04C05H6180.0°180.0°
C03C04C05C060.3°0.0°
C03C04C05N09179.9°180.0°
C02C01C06H4180.0°179.7°
C02C01C06C050.1°0.0°
C02C01C06C07179.8°179.8°
C01C02C03H5179.9°179.9°
C04C05C06C010.1°0.0°
C04C05C06N09179.9°179.9°
C04C05C06C07180.0°179.9°
C04C05N09C08179.7°179.9°
C05C04C03H5179.8°180.0°
C04C05N09H80.3°0.1°
C01C06C05C07179.9°179.9°
C01C06C05N09180.0°179.9°
C01C06C07C08179.9°180.0°
C01C06C07H70.1°0.1°
C06C05N09C080.1°0.1°
C05C06C07C080.2°0.2°
C05C06C01H4179.9°179.7°
C06C05C04H6179.8°180.0°
C05C06C07H7179.8°179.7°
C06C05N09H8179.9°180.0°
N09C05C06C070.1°0.2°
C05N09C08H8180.0°179.8°
C05N09C08C070.3°0.0°
C05N09C08C10179.7°179.8°
N09C05C04H60.1°0.0°
C06C07C08N090.3°0.1°
C06C07C08H7180.0°179.9°
C06C07C08C10179.7°179.9°
C07C06C01H40.2°0.1°
N09C08C07C10180.0°179.8°
N09C08C10O1118.9°173.3°
N09C08C10C12160.0°6.9°
N09C08C07H7179.7°179.8°
C07C08C10O11161.0°6.5°
C07C08C10C1220.0°173.3°
C07C08N09H8179.7°179.8°
C08C10O11C12179.0°179.7°
C08C10C12C1726.6°27.0°
C08C10C12C13154.0°153.1°
C10C08C07H70.3°0.0°
C10C08N09H80.3°0.0°
O11C10C12C17152.4°152.7°
O11C10C12C1327.0°27.2°
C10C12C17C13179.4°179.9°
C10C12C17C16180.0°179.5°
C10C12C13C14180.0°180.0°
C10C12C13H10.1°0.3°
C10C12C17H30.0°0.1°
C12C17C16H3180.0°179.5°
C12C17C16C150.3°0.7°
C17C12C13C140.6°0.0°
C17C12C13H1179.4°179.8°
C12C17C16H10179.7°180.0°
C16C17C12C130.6°0.4°
C17C16C15H10180.0°179.3°
C17C16C15C140.1°0.5°
C17C16C15H2179.9°179.5°
C12C13C14H1180.0°179.7°
C12C13C14C150.4°0.2°
C13C12C17H3179.4°180.0°
C12C13C14H9179.6°179.7°
C16C15C14C130.1°0.1°
C16C15C14H2180.0°179.9°
C15C16C17H3179.7°179.8°
C16C15C14H9179.9°180.0°
C13C14C15H9180.0°180.0°
C13C14C15H2179.9°180.0°
C15C14C13H1179.6°179.9°
C14C15C16H10179.9°179.8°
H1C13C14H90.4°0.0°
H2C15C14H90.1°0.0°
H2C15C16H100.1°0.3°
H3C17C16H100.3°0.5°
H5C03C04H60.1°0.1°
H11C19H12H13120.0°119.9°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon