D33
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C4 | H44 | sing | 1.08Å | 1.08Å | |
| C5 | C4 | doub | 1.35Å | 1.37Å | Aromatic |
| C2 | N3 | doub | 1.31Å | 1.32Å | Aromatic |
| N1 | C5 | sing | 1.37Å | 1.38Å | Aromatic |
| N1 | C2 | sing | 1.35Å | 1.37Å | Aromatic |
| P | O5' | sing | 1.61Å | 1.61Å | |
| P | OP2 | sing | 1.61Å | 1.48Å | |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| C5' | H25' | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C1' | N1 | sing | 1.47Å | 1.48Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| N3 | C4 | sing | 1.34Å | 1.38Å | Aromatic |
| C2' | H22' | sing | 1.09Å | 1.10Å | |
| C2' | H12' | sing | 1.09Å | 1.10Å | |
| C3' | C2' | sing | 1.55Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| H15' | C5' | sing | 1.09Å | 1.10Å | |
| H4' | C4' | sing | 1.09Å | 1.10Å | |
| H1' | C1' | sing | 1.09Å | 1.10Å | |
| H55 | C5 | sing | 1.08Å | 1.08Å | |
| H22 | C2 | sing | 1.08Å | 1.08Å | |
| P | OP3 | sing | 1.61Å | 1.72Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| H44 | C4 | C5 | 124.9° | 126.0° |
| H44 | C4 | N3 | 124.9° | 126.0° |
| C4 | C5 | N1 | 106.1° | 106.8° |
| C5 | C4 | N3 | 110.3° | 108.0° |
| C4 | C5 | H55 | 126.9° | 126.6° |
| N3 | C2 | N1 | 112.2° | 108.7° |
| C2 | N3 | C4 | 105.2° | 109.2° |
| N3 | C2 | H22 | 123.9° | 125.6° |
| C5 | N1 | C2 | 106.2° | 107.2° |
| C5 | N1 | C1' | 127.1° | 126.4° |
| N1 | C5 | H55 | 127.0° | 126.6° |
| C2 | N1 | C1' | 126.6° | 126.4° |
| N1 | C2 | H22 | 123.9° | 125.7° |
| O5' | P | OP2 | 108.3° | 109.5° |
| O5' | P | OP1 | 108.1° | 109.4° |
| P | O5' | C5' | 120.2° | 123.0° |
| O5' | P | OP3 | 101.5° | 109.5° |
| OP2 | P | OP1 | 120.0° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP2 | P | OP3 | 93.9° | 109.5° |
| OP1 | P | OP3 | 122.9° | 109.5° |
| O5' | C5' | C4' | 111.7° | 109.5° |
| O5' | C5' | H25' | 108.7° | 109.5° |
| O5' | C5' | H15' | 108.2° | 109.5° |
| C4' | C5' | H25' | 108.7° | 109.4° |
| C5' | C4' | O4' | 109.6° | 110.6° |
| C5' | C4' | C3' | 109.0° | 110.6° |
| C4' | C5' | H15' | 108.2° | 109.5° |
| C5' | C4' | H4' | 109.2° | 110.6° |
| H25' | C5' | H15' | 111.2° | 109.5° |
| O4' | C4' | C3' | 108.0° | 103.5° |
| C4' | O4' | C1' | 110.5° | 107.0° |
| O4' | C4' | H4' | 110.3° | 110.7° |
| C4' | C3' | C2' | 105.7° | 102.1° |
| C4' | C3' | H3' | 112.5° | 110.9° |
| C4' | C3' | O3' | 108.8° | 110.9° |
| C3' | C4' | H4' | 110.8° | 110.7° |
| O4' | C1' | N1 | 110.5° | 109.9° |
| O4' | C1' | C2' | 107.1° | 107.3° |
| O4' | C1' | H1' | 111.1° | 109.9° |
| N1 | C1' | C2' | 111.8° | 109.9° |
| N1 | C1' | H1' | 106.4° | 109.9° |
| C1' | C2' | H22' | 110.8° | 110.5° |
| C1' | C2' | H12' | 111.7° | 110.5° |
| C1' | C2' | C3' | 105.4° | 104.2° |
| C2' | C1' | H1' | 109.9° | 110.0° |
| H22' | C2' | H12' | 106.4° | 110.4° |
| H22' | C2' | C3' | 110.9° | 110.5° |
| H12' | C2' | C3' | 111.7° | 110.7° |
| C2' | C3' | H3' | 111.5° | 110.9° |
| C2' | C3' | O3' | 109.7° | 110.9° |
| H3' | C3' | O3' | 108.6° | 110.8° |
| C3' | O3' | HO3' | 109.5° | 114.1° |
| P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| H44 | C4 | C5 | N3 | 180.0° | 179.8° |
| H44 | C4 | N3 | C2 | 179.8° | 179.8° |
| H44 | C4 | C5 | N1 | 179.5° | 180.0° |
| H44 | C4 | C5 | H55 | 0.5° | 0.1° |
| C5 | C4 | N3 | C2 | 0.2° | 0.4° |
| C4 | C5 | N1 | H55 | 180.0° | 179.9° |
| C4 | C5 | N1 | C2 | 0.6° | 0.1° |
| C4 | C5 | N1 | C1' | 176.5° | 179.9° |
| N3 | C2 | N1 | C5 | 0.5° | 0.3° |
| N3 | C2 | N1 | H22 | 180.0° | 179.6° |
| N3 | C2 | N1 | C1' | 176.6° | 179.8° |
| C5 | N1 | C2 | C1' | 177.1° | 179.9° |
| C5 | N1 | C1' | O4' | 45.1° | 141.4° |
| C5 | N1 | C1' | C2' | 74.1° | 100.8° |
| N1 | C5 | C4 | N3 | 0.5° | 0.2° |
| C5 | N1 | C1' | H1' | 165.9° | 20.4° |
| C5 | N1 | C2 | H22 | 179.5° | 179.9° |
| C2 | N1 | C1' | O4' | 131.3° | 38.5° |
| C2 | N1 | C1' | C2' | 109.4° | 79.3° |
| N1 | C2 | N3 | C4 | 0.2° | 0.5° |
| C2 | N1 | C1' | H1' | 10.5° | 159.5° |
| C2 | N1 | C5 | H55 | 179.4° | 179.9° |
| O5' | P | OP2 | OP1 | 124.6° | 120.0° |
| O5' | P | OP2 | OP3 | 103.5° | 120.0° |
| O5' | P | OP1 | OP3 | 117.6° | 120.0° |
| O5' | P | OP2 | HOP2 | 143.0° | 60.0° |
| P | O5' | C5' | C4' | 140.8° | 180.0° |
| P | O5' | C5' | H25' | 99.1° | 60.0° |
| P | O5' | C5' | H15' | 21.8° | 60.0° |
| O5' | P | OP3 | HOP3 | 76.3° | 180.0° |
| OP2 | P | OP1 | OP3 | 117.8° | 120.0° |
| OP2 | P | O5' | C5' | 177.5° | 65.0° |
| OP2 | P | OP3 | HOP3 | 174.2° | 60.0° |
| OP1 | P | OP2 | HOP2 | 92.4° | 180.0° |
| OP1 | P | O5' | C5' | 46.1° | 55.0° |
| OP1 | P | OP3 | HOP3 | 44.4° | 60.1° |
| HOP2 | OP2 | P | OP3 | 39.5° | 60.0° |
| O5' | C5' | C4' | H25' | 120.0° | 120.0° |
| O5' | C5' | C4' | H15' | 119.0° | 120.0° |
| O5' | C5' | H25' | H15' | 119.1° | 120.0° |
| O5' | C5' | C4' | O4' | 33.0° | 66.5° |
| O5' | C5' | C4' | C3' | 85.0° | 179.5° |
| O5' | C5' | C4' | H4' | 153.9° | 56.5° |
| C5' | O5' | P | OP3 | 84.5° | 175.0° |
| C4' | C5' | H25' | H15' | 119.1° | 120.0° |
| C5' | C4' | O4' | C3' | 118.6° | 118.5° |
| C5' | C4' | O4' | H4' | 120.2° | 122.9° |
| C5' | C4' | C3' | H4' | 120.2° | 122.9° |
| C5' | C4' | O4' | C1' | 133.0° | 158.5° |
| C5' | C4' | C3' | C2' | 122.6° | 155.5° |
| C5' | C4' | C3' | H3' | 0.6° | 37.3° |
| C5' | C4' | C3' | O3' | 119.7° | 86.3° |
| H25' | C5' | C4' | O4' | 153.0° | 173.5° |
| H25' | C5' | C4' | C3' | 35.1° | 59.5° |
| H25' | C5' | C4' | H4' | 86.1° | 63.5° |
| O4' | C4' | C3' | H4' | 120.8° | 118.6° |
| C4' | O4' | C1' | N1 | 141.3° | 146.0° |
| C4' | O4' | C1' | C2' | 19.3° | 26.5° |
| O4' | C4' | C3' | C2' | 3.6° | 37.0° |
| O4' | C4' | C3' | H3' | 118.3° | 81.2° |
| O4' | C4' | C3' | O3' | 121.4° | 155.2° |
| O4' | C4' | C5' | H15' | 86.1° | 53.5° |
| C4' | O4' | C1' | H1' | 100.8° | 93.0° |
| C3' | C4' | O4' | C1' | 14.4° | 40.1° |
| C4' | C3' | C2' | C1' | 7.5° | 20.9° |
| C4' | C3' | C2' | H22' | 127.5° | 97.8° |
| C4' | C3' | C2' | H12' | 114.1° | 139.6° |
| C4' | C3' | C2' | H3' | 122.5° | 118.2° |
| C4' | C3' | C2' | O3' | 117.1° | 118.2° |
| C4' | C3' | H3' | O3' | 120.4° | 123.7° |
| C4' | C3' | O3' | HO3' | 178.8° | 180.0° |
| C3' | C4' | C5' | H15' | 156.0° | 60.5° |
| O4' | C1' | N1 | C2' | 119.2° | 117.8° |
| O4' | C1' | N1 | H1' | 120.8° | 121.0° |
| O4' | C1' | C2' | H1' | 120.9° | 119.5° |
| O4' | C1' | C2' | H22' | 136.1° | 120.7° |
| O4' | C1' | C2' | H12' | 105.4° | 116.8° |
| O4' | C1' | C2' | C3' | 16.1° | 2.1° |
| C1' | O4' | C4' | H4' | 106.7° | 78.5° |
| N1 | C1' | C2' | H1' | 117.9° | 121.1° |
| N1 | C1' | C2' | H22' | 102.6° | 119.8° |
| N1 | C1' | C2' | H12' | 15.8° | 2.6° |
| N1 | C1' | C2' | C3' | 137.4° | 121.5° |
| C1' | N1 | C5 | H55 | 3.5° | 0.2° |
| C1' | N1 | C2 | H22 | 3.4° | 0.2° |
| C1' | C2' | H22' | H12' | 121.7° | 122.5° |
| C1' | C2' | H22' | C3' | 116.7° | 114.8° |
| C1' | C2' | H12' | C3' | 117.8° | 114.9° |
| C1' | C2' | C3' | H3' | 130.0° | 97.3° |
| C1' | C2' | C3' | O3' | 109.6° | 139.1° |
| N3 | C4 | C5 | H55 | 179.5° | 179.6° |
| C4 | N3 | C2 | H22 | 179.8° | 179.9° |
| H22' | C2' | H12' | C3' | 121.1° | 122.6° |
| H22' | C2' | C3' | H3' | 110.0° | 144.0° |
| H22' | C2' | C3' | O3' | 10.4° | 20.4° |
| H22' | C2' | C1' | H1' | 15.3° | 1.2° |
| H12' | C2' | C3' | H3' | 8.5° | 21.4° |
| H12' | C2' | C3' | O3' | 128.8° | 102.2° |
| H12' | C2' | C1' | H1' | 133.7° | 123.7° |
| C2' | C3' | H3' | O3' | 121.1° | 123.6° |
| C2' | C3' | O3' | HO3' | 63.7° | 67.3° |
| C2' | C3' | C4' | H4' | 117.2° | 81.6° |
| C3' | C2' | C1' | H1' | 104.7° | 117.5° |
| H3' | C3' | O3' | HO3' | 58.5° | 56.3° |
| H3' | C3' | C4' | H4' | 120.9° | 160.3° |
| O3' | C3' | C4' | H4' | 0.5° | 36.6° |
| H15' | C5' | C4' | H4' | 34.8° | 176.5° |
