Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

D2R

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2N1doub1.33Å1.35ÅAromatic
N1C6sing1.33Å1.32ÅAromatic
N3C2sing1.32Å1.34ÅAromatic
NACC2sing1.38Å1.37Å
N3C4doub1.34Å1.35ÅAromatic
NAQC4sing1.33Å1.36ÅAromatic
C4C5sing1.42Å1.44ÅAromatic
C5CAXsing1.40Å1.43ÅAromatic
C5C6doub1.42Å1.44ÅAromatic
C6NADsing1.38Å1.34Å
OATCAAsing1.43Å1.43Å
CAAHAAsing1.09Å1.10Å
CAAHAAAsing1.09Å1.10Å
CAAHAABsing1.09Å1.10Å
CAXCABsing1.51Å1.56Å
CABHABsing1.09Å1.10Å
CABHABAsing1.09Å1.10Å
CABHABBsing1.09Å1.10Å
NACHNACsing0.97Å1.00Å
NACHNAAsing0.97Å1.00Å
NADHNADsing0.97Å1.00Å
NADHNABsing0.97Å1.00Å
OAECAUdoub1.21Å1.25Å
CAUOAFsing1.34Å1.27Å
OAFHOAFsing0.97Å0.95Å
CAMCAGsing1.47Å1.47Å
CAGCAHtrip1.17Å1.21Å
CAHCAZsing1.43Å1.44Å
CAJCAIdoub1.38Å1.39ÅAromatic
CAICAYsing1.39Å1.41ÅAromatic
CAIHAIsing1.08Å1.08Å
CAZCAJsing1.40Å1.41ÅAromatic
CAJHAJsing1.08Å1.08Å
NAQCAKdoub1.31Å1.34ÅAromatic
CAKCBAsing1.39Å1.40ÅAromatic
CAKHAKsing1.08Å1.08Å
CBBCALsing1.38Å1.37ÅAromatic
CALCAYdoub1.39Å1.40ÅAromatic
CALHALsing1.08Å1.08Å
CAMCANsing1.53Å1.51Å
CAMHAMsing1.09Å1.10Å
CAMHAMAsing1.09Å1.10Å
CAOCANsing1.53Å1.54Å
CANHANsing1.09Å1.10Å
CANHANAsing1.09Å1.10Å
CAOCAUsing1.51Å1.54Å
CAOHAOsing1.09Å1.10Å
CAOHAOAsing1.09Å1.10Å
CBACAPsing1.51Å1.57Å
CAPCBBsing1.51Å1.50Å
CAPHAPsing1.09Å1.10Å
CAPHAPAsing1.09Å1.10Å
CAYOATsing1.36Å1.35Å
CBACAXdoub1.37Å1.41ÅAromatic
CAZCBBdoub1.40Å1.42ÅAromatic
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6124.3°121.3°
N1C2N3121.9°122.9°
N1C2NAC122.0°118.6°
N1C6C5117.2°118.3°
N1C6NAD119.6°120.9°
N3C2NAC116.2°118.6°
C2N3C4118.0°120.5°
C2NACHNAC109.5°120.0°
C2NACHNAA109.5°120.0°
N3C4NAQ116.6°121.7°
N3C4C5121.9°118.5°
NAQC4C5121.4°119.8°
C4NAQCAK117.8°121.2°
C4C5CAX119.2°119.3°
C4C5C6116.7°118.5°
CAXC5C6124.1°122.1°
C5CAXCAB126.3°121.0°
C5CAXCBA118.0°118.0°
C5C6NAD123.3°120.9°
C6NADHNAD109.5°120.0°
C6NADHNAB109.4°120.0°
OATCAAHAA109.5°109.5°
OATCAAHAAA109.5°109.4°
OATCAAHAAB109.4°109.5°
CAAOATCAY107.9°117.0°
HAACAAHAAA109.4°109.5°
HAACAAHAAB109.5°109.5°
HAAACAAHAAB109.5°109.4°
CAXCABHAB109.5°109.5°
CAXCABHABA109.5°109.5°
CAXCABHABB109.5°109.5°
CABCAXCBA115.6°121.0°
HABCABHABA109.4°109.4°
HABCABHABB109.5°109.5°
HABACABHABB109.5°109.5°
HNACNACHNAA109.5°120.1°
HNADNADHNAB109.5°120.0°
OAECAUOAF123.7°120.0°
OAECAUCAO115.6°120.0°
CAUOAFHOAF109.5°117.0°
OAFCAUCAO120.7°120.0°
CAMCAGCAH178.3°179.9°
CAGCAMCAN106.3°109.5°
CAGCAMHAM110.5°109.5°
CAGCAMHAMA110.6°109.4°
CAGCAHCAZ179.6°179.9°
CAHCAZCAJ120.1°120.1°
CAHCAZCBB119.0°120.1°
CAJCAICAY118.7°120.1°
CAJCAIHAI120.7°120.0°
CAICAJCAZ119.6°120.0°
CAICAJHAJ120.2°120.0°
CAYCAIHAI120.6°120.0°
CAICAYCAL121.3°120.2°
CAICAYOAT119.6°119.9°
CAZCAJHAJ120.2°120.0°
CAJCAZCBB120.9°119.8°
NAQCAKCBA125.7°121.8°
NAQCAKHAK117.2°119.1°
CBACAKHAK117.1°119.1°
CAKCBACAP119.7°120.0°
CAKCBACAX117.9°119.9°
CBBCALCAY120.1°120.1°
CBBCALHAL120.0°120.0°
CALCBBCAP117.0°120.0°
CALCBBCAZ119.3°119.9°
CAYCALHAL120.0°119.9°
CALCAYOAT119.1°119.9°
CANCAMHAM110.5°109.5°
CANCAMHAMA110.5°109.5°
CAMCANCAO113.5°109.5°
CAMCANHAN108.2°109.5°
CAMCANHANA108.1°109.5°
HAMCAMHAMA108.4°109.5°
CAOCANHAN108.2°109.5°
CAOCANHANA108.2°109.4°
CANCAOCAU115.9°109.5°
CANCAOHAO107.4°109.5°
CANCAOHAOA107.4°109.4°
HANCANHANA110.7°109.4°
CAUCAOHAO107.4°109.5°
CAUCAOHAOA107.4°109.5°
HAOCAOHAOA111.5°109.5°
CBACAPCBB118.0°109.4°
CBACAPHAP106.7°109.4°
CBACAPHAPA106.7°109.4°
CAPCBACAX122.4°120.1°
CBBCAPHAP106.7°109.5°
CBBCAPHAPA106.7°109.5°
CAPCBBCAZ123.6°120.1°
HAPCAPHAPA112.1°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2N3NAC178.1°180.0°
N1C2N3C43.2°0.0°
C2N1C6C51.0°0.1°
C2N1C6NAD179.5°180.0°
N1C2NACHNAC0.0°0.0°
N1C2NACHNAA120.0°180.0°
C6N1C2N31.1°0.0°
C6N1C2NAC179.1°180.0°
N1C6C5C40.8°0.1°
N1C6C5CAX176.8°180.0°
N1C6C5NAD178.4°180.0°
N1C6NADHNAD0.0°138.8°
N1C6NADHNAB120.0°41.2°
C2N3C4NAQ178.3°180.0°
C2N3C4C53.3°0.0°
N3C2NACHNAC178.1°180.0°
N3C2NACHNAA61.9°0.0°
NACC2N3C4178.7°180.0°
C2NACHNACHNAA120.0°180.0°
N3C4NAQC5178.4°180.0°
N3C4C5CAX179.1°180.0°
N3C4C5C61.3°0.0°
N3C4NAQCAK179.7°180.0°
NAQC4C5CAX2.7°0.0°
NAQC4C5C6179.6°179.9°
C4NAQCAKCBA1.1°0.0°
C4NAQCAKHAK178.9°180.0°
C4C5CAXC6177.5°179.9°
C4C5C6NAD179.2°180.0°
C4C5CAXCAB179.8°180.0°
C5C4NAQCAK2.0°0.0°
C4C5CAXCBA2.4°0.0°
CAXC5C6NAD1.6°0.0°
C5CAXCABCBA177.9°180.0°
C5CAXCABHAB88.7°82.8°
C5CAXCABHABA151.3°157.2°
C5CAXCABHABB31.3°37.2°
C5CAXCBACAK1.5°0.1°
C5CAXCBACAP179.4°180.0°
C6C5CAXCAB2.3°0.0°
C5C6NADHNAD178.4°41.2°
C5C6NADHNAB61.6°138.8°
C6C5CAXCBA179.9°180.0°
C6NADHNADHNAB120.0°180.0°
OATCAAHAAHAAA120.0°120.0°
OATCAAHAAHAAB120.0°120.0°
OATCAAHAAAHAAB120.0°120.0°
CAAOATCAYCAI144.0°0.0°
CAAOATCAYCAL37.0°180.0°
HAACAAHAAAHAAB120.0°120.0°
HAACAAOATCAY180.0°60.0°
HAAACAAOATCAY60.0°60.0°
HAABCAAOATCAY60.0°180.0°
CAXCABHABHABA120.0°120.0°
CAXCABHABHABB120.0°120.0°
CAXCABHABAHABB120.0°120.0°
CABCAXCBACAK179.6°180.0°
CABCAXCBACAP2.5°0.0°
HABCABHABAHABB120.0°120.0°
HABCABCAXCBA89.2°97.2°
HABACABCAXCBA30.8°22.8°
HABBCABCAXCBA150.8°142.8°
OAECAUOAFCAO177.2°180.0°
OAECAUOAFHOAF0.0°0.1°
OAECAUCAOCAN146.1°0.0°
OAECAUCAOHAO26.1°120.0°
OAECAUCAOHAOA93.9°119.9°
OAFCAUCAOCAN36.4°180.0°
OAFCAUCAOHAO156.4°60.0°
OAFCAUCAOHAOA83.6°60.0°
HOAFOAFCAUCAO177.2°179.9°
CAMCAGCAHCAZ119.4°164.7°
CAGCAMCANHAM120.0°120.0°
CAGCAMCANHAMA120.0°119.9°
CAGCAMHAMHAMA121.3°119.9°
CAGCAMCANCAO166.3°180.0°
CAGCAMCANHAN73.7°60.0°
CAGCAMCANHANA46.3°60.0°
CAGCAHCAZCAJ149.6°58.2°
CAHCAGCAMCAN163.5°42.9°
CAHCAGCAMHAM76.5°77.1°
CAHCAGCAMHAMA43.5°162.9°
CAGCAHCAZCBB30.0°121.8°
CAHCAZCAJCAI179.6°180.0°
CAHCAZCAJCBB179.6°180.0°
CAHCAZCAJHAJ0.4°0.0°
CAHCAZCBBCAL178.6°179.7°
CAHCAZCBBCAP1.5°0.0°
CAJCAICAYHAI180.0°179.7°
CAICAJCAZHAJ180.0°180.0°
CAJCAICAYCAL2.0°0.3°
CAJCAICAYOAT179.1°179.8°
CAICAJCAZCBB0.1°0.0°
CAYCAICAJCAZ1.9°0.0°
CAYCAICAJHAJ178.1°180.0°
CAICAYCALCBB0.1°0.5°
CAICAYCALOAT179.0°180.0°
CAICAYCALHAL179.9°180.0°
HAICAICAJCAZ178.1°179.7°
HAICAICAJHAJ1.9°0.3°
HAICAICAYCAL178.0°180.0°
HAICAICAYOAT0.9°0.1°
CAJCAZCBBCAL1.8°0.3°
CAJCAZCBBCAP178.9°180.0°
HAJCAJCAZCBB180.0°180.0°
NAQCAKCBAHAK180.0°180.0°
NAQCAKCBACAP178.9°180.0°
NAQCAKCBACAX0.9°0.0°
CAKCBACAPCAX177.9°180.0°
CAKCBACAPCBB57.1°95.0°
CAKCBACAPHAP62.8°25.0°
CAKCBACAPHAPA177.1°145.0°
HAKCAKCBACAP1.1°0.0°
HAKCAKCBACAX179.1°180.0°
CBBCALCAYHAL180.0°179.5°
CALCBBCAPCBA77.9°95.3°
CALCBBCAPCAZ177.2°179.7°
CALCBBCAPHAP162.1°144.8°
CALCBBCAPHAPA42.1°24.7°
CBBCALCAYOAT179.1°179.5°
CAYCALCBBCAP179.0°179.8°
CAYCALCBBCAZ1.7°0.5°
HALCALCBBCAP0.9°0.3°
HALCALCAYOAT0.9°0.0°
HALCALCBBCAZ178.2°180.0°
CANCAMHAMHAMA121.3°120.0°
CAMCANCAOHAN120.0°120.0°
CAMCANCAOHANA120.0°120.0°
CAMCANHANHANA118.3°120.1°
CAMCANCAOCAU175.0°180.0°
CAMCANCAOHAO55.0°60.0°
CAMCANCAOHAOA64.9°60.0°
HAMCAMCANCAO46.3°60.0°
HAMCAMCANHAN166.3°180.0°
HAMCAMCANHANA73.7°60.0°
HAMACAMCANCAO73.7°60.1°
HAMACAMCANHAN46.3°60.0°
HAMACAMCANHANA166.3°180.0°
CAOCANHANHANA118.4°119.9°
CANCAOCAUHAO120.0°120.0°
CANCAOCAUHAOA120.0°119.9°
CANCAOHAOHAOA117.3°119.9°
HANCANCAOCAU64.9°59.9°
HANCANCAOHAO175.1°180.0°
HANCANCAOHAOA55.1°60.0°
HANACANCAOCAU55.1°60.0°
HANACANCAOHAO65.0°60.1°
HANACANCAOHAOA175.1°180.0°
CAUCAOHAOHAOA117.4°120.0°
CBACAPCBBHAP120.0°120.0°
CBACAPCBBHAPA120.0°120.0°
CBACAPHAPHAPA116.5°120.0°
CBACAPCBBCAZ104.9°85.0°
CBBCAPHAPHAPA116.5°120.1°
CBBCAPCBACAX125.0°85.0°
HAPCAPCBACAX115.1°155.0°
HAPCAPCBBCAZ15.1°34.9°
HAPACAPCBACAX5.0°35.0°
HAPACAPCBBCAZ135.1°155.0°

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon