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D2Q

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.51Å
C1O47sing1.45Å1.42Å
C3C26sing1.53Å1.53Å
C3C44sing1.53Å1.53Å
C1'C2'Adoub1.39Å1.37ÅAromatic
C1'C6'Asing1.38Å1.38ÅAromatic
C1'C61sing1.51Å1.51Å
N1'C2'doub1.32Å1.32ÅAromatic
N1'C8Asing1.34Å1.33ÅAromatic
C2'N2'sing1.38Å1.33Å
C2'N3'sing1.33Å1.34ÅAromatic
C2'AO2'sing1.36Å1.37Å
C2'AC3'sing1.39Å1.38ÅAromatic
O2'C21sing1.43Å1.45Å
C21C26sing1.53Å1.52Å
C3'C4'Adoub1.38Å1.39ÅAromatic
N3'C4'doub1.33Å1.34ÅAromatic
C4'N4'sing1.38Å1.32Å
C4'C4Asing1.42Å1.39ÅAromatic
C4'AC5'Asing1.39Å1.40ÅAromatic
C44C45sing1.51Å1.55Å
C45O46doub1.21Å1.23Å
C45O47sing1.34Å1.37Å
C4AC5'doub1.40Å1.39ÅAromatic
C4AC8Asing1.42Å1.39ÅAromatic
C5'C51sing1.51Å1.50Å
C5'C6'sing1.37Å1.39ÅAromatic
C5'AO5'sing1.36Å1.39Å
C5'AC6'Adoub1.39Å1.38ÅAromatic
O5'C5Asing1.43Å1.55Å
C6'C61sing1.51Å1.54Å
C6'C7'doub1.39Å1.37ÅAromatic
C7'N8'sing1.31Å1.31ÅAromatic
N8'C8Adoub1.33Å1.32ÅAromatic
C1H1sing1.09Å1.10Å
C1H1Asing1.09Å1.10Å
C2H2sing1.09Å1.10Å
C2H2Asing1.09Å1.10Å
C2H2Bsing1.09Å1.10Å
C3H3sing1.09Å1.10Å
C3H3Asing1.09Å1.10Å
N2'HN2'sing0.97Å1.00Å
N2'HN2Asing0.97Å1.00Å
C21H21sing1.09Å1.10Å
C21H21Asing1.09Å1.10Å
C26H26sing1.09Å1.10Å
C26H26Asing1.09Å1.10Å
C3'H3'sing1.08Å1.08Å
C4'AH4'sing1.08Å1.08Å
N4'HN4'sing0.97Å1.00Å
N4'HN4Asing0.97Å1.00Å
C44H44sing1.09Å1.10Å
C44H44Asing1.09Å1.10Å
C51H51sing1.09Å1.10Å
C51H51Asing1.09Å1.10Å
C51H51Bsing1.09Å1.10Å
C5AH5Asing1.09Å1.10Å
C5AH5AAsing1.09Å1.10Å
C5AH5ABsing1.09Å1.10Å
C6'AH6'sing1.08Å1.08Å
C61H61sing1.09Å1.10Å
C61H61Asing1.09Å1.10Å
C7'H7'sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O47101.9°109.5°
C2C1H1112.1°109.4°
C2C1H1A112.1°109.4°
C1C2H2109.5°109.4°
C1C2H2A109.4°109.5°
C1C2H2B109.5°109.5°
C1O47C45113.3°117.0°
O47C1H1112.1°109.5°
O47C1H1A112.1°109.5°
C26C3C44110.9°109.5°
C3C26C21115.9°109.5°
C26C3H3109.0°109.4°
C26C3H3A109.0°109.5°
C3C26H26107.4°109.5°
C3C26H26A107.4°109.5°
C3C44C45115.5°109.5°
C44C3H3109.0°109.5°
C44C3H3A109.0°109.5°
C3C44H44107.5°109.5°
C3C44H44A107.5°109.5°
C2'AC1'C6'A120.4°120.0°
C2'AC1'C61124.7°120.0°
C1'C2'AO2'120.9°120.0°
C1'C2'AC3'118.2°120.0°
C6'AC1'C61114.8°120.0°
C1'C6'AC5'A123.2°120.0°
C1'C6'AH6'118.4°120.1°
C1'C61C6'112.8°109.4°
C1'C61H61108.4°109.4°
C1'C61H61A108.4°109.4°
C2'N1'C8A121.5°120.6°
N1'C2'N2'119.8°118.6°
N1'C2'N3'119.1°122.9°
N1'C8AC4A120.9°118.5°
N1'C8AN8'120.0°121.8°
N2'C2'N3'121.1°118.6°
C2'N2'HN2'109.5°120.0°
C2'N2'HN2A109.5°120.0°
C2'N3'C4'122.8°121.3°
O2'C2'AC3'120.9°120.0°
C2'AO2'C21113.8°117.0°
C2'AC3'C4'A120.9°120.0°
C2'AC3'H3'119.5°120.0°
O2'C21C26103.3°109.5°
O2'C21H21111.6°109.5°
O2'C21H21A111.6°109.5°
C26C21H21111.6°109.5°
C26C21H21A111.6°109.5°
C21C26H26107.4°109.5°
C21C26H26A107.4°109.4°
C3'C4'AC5'A121.7°120.0°
C4'AC3'H3'119.6°120.0°
C3'C4'AH4'119.1°120.0°
N3'C4'N4'118.4°120.9°
N3'C4'C4A119.0°118.3°
N4'C4'C4A122.7°120.8°
C4'N4'HN4'109.5°120.0°
C4'N4'HN4A109.5°120.0°
C4'C4AC5'124.7°122.1°
C4'C4AC8A116.8°118.5°
C4'AC5'AO5'128.1°120.0°
C4'AC5'AC6'A115.4°120.0°
C5'AC4'AH4'119.1°120.0°
C44C45O46121.5°120.0°
C44C45O47118.6°120.0°
C45C44H44107.5°109.5°
C45C44H44A107.5°109.5°
O46C45O47119.8°120.0°
C5'C4AC8A118.5°119.3°
C4AC5'C51123.0°121.0°
C4AC5'C6'120.3°118.0°
C4AC8AN8'119.0°119.8°
C51C5'C6'116.7°121.0°
C5'C51H51109.5°109.5°
C5'C51H51A109.4°109.5°
C5'C51H51B109.4°109.5°
C5'C6'C61124.9°120.1°
C5'C6'C7'117.1°119.9°
O5'C5'AC6'A116.4°120.0°
C5'AO5'C5A135.5°117.0°
C5'AC6'AH6'118.4°120.0°
O5'C5AH5A109.5°109.4°
O5'C5AH5AA109.4°109.5°
O5'C5AH5AB109.5°109.5°
C61C6'C7'117.9°120.1°
C6'C61H61108.4°109.5°
C6'C61H61A108.4°109.5°
C6'C7'N8'122.2°121.8°
C6'C7'H7'118.9°119.1°
C7'N8'C8A122.9°121.2°
N8'C7'H7'118.9°119.1°
H1C1H1A106.7°109.5°
H2C2H2A109.5°109.5°
H2C2H2B109.5°109.5°
H2AC2H2B109.4°109.5°
H3C3H3A109.9°109.5°
HN2'N2'HN2A109.5°120.0°
H21C21H21A107.3°109.5°
H26C26H26A111.5°109.5°
HN4'N4'HN4A109.5°120.0°
H44C44H44A111.4°109.4°
H51C51H51A109.5°109.5°
H51C51H51B109.4°109.5°
H51AC51H51B109.5°109.4°
H5AC5AH5AA109.5°109.5°
H5AC5AH5AB109.4°109.4°
H5AAC5AH5AB109.5°109.5°
H61C61H61A110.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O47H1120.0°120.0°
C2C1O47H1A120.0°120.0°
C2C1O47C4597.3°180.0°
C2C1H1H1A123.1°120.0°
C1C2H2H2A120.0°120.0°
C1C2H2H2B120.0°120.0°
C1C2H2AH2B120.0°120.0°
C1O47C45C44137.1°180.0°
C1O47C45O4646.7°0.1°
O47C1H1H1A123.1°120.0°
O47C1C2H2180.0°60.0°
O47C1C2H2A60.0°180.0°
O47C1C2H2B60.0°60.0°
C26C3C44H3120.0°120.0°
C26C3C44H3A120.0°120.0°
C3C26C21O2'133.9°180.0°
C3C26C21H26120.0°120.0°
C3C26C21H26A120.0°120.0°
C26C3C44C45178.6°180.0°
C26C3H3H3A119.4°120.0°
C3C26C21H2113.9°60.0°
C3C26C21H21A106.2°60.0°
C3C26H26H26A117.3°120.0°
C26C3C44H4458.6°60.0°
C26C3C44H44A61.4°60.0°
C44C3C26C21171.4°180.0°
C3C44C45H44120.0°120.1°
C3C44C45H44A120.0°120.0°
C3C44C45O4614.4°0.1°
C3C44C45O47169.4°180.0°
C44C3H3H3A119.4°120.0°
C44C3C26H2668.6°60.0°
C44C3C26H26A51.4°60.0°
C3C44H44H44A117.5°120.0°
C2'AC1'C6'AC61179.9°179.7°
C1'C2'AO2'C3'179.7°180.0°
C1'C2'AO2'C21175.1°180.0°
C1'C2'AC3'C4'A0.0°0.0°
C2'AC1'C6'AC5'A1.3°0.0°
C2'AC1'C61C6'105.7°85.0°
C1'C2'AC3'H3'180.0°180.0°
C2'AC1'C6'AH6'178.7°180.0°
C2'AC1'C61H61134.3°155.0°
C2'AC1'C61H61A14.3°35.0°
C6'AC1'C2'AO2'179.3°180.0°
C6'AC1'C2'AC3'0.4°0.0°
C1'C6'AC5'AC4'A1.6°0.0°
C1'C6'AC5'AO5'180.0°180.0°
C1'C6'AC5'AH6'180.0°180.0°
C6'AC1'C61C6'74.4°95.3°
C6'AC1'C61H6145.6°24.7°
C6'AC1'C61H61A165.6°144.7°
C61C1'C2'AO2'0.6°0.3°
C61C1'C2'AC3'179.7°179.7°
C1'C61C6'C5'115.6°85.0°
C61C1'C6'AC5'A178.8°179.7°
C1'C61C6'H61120.0°119.9°
C1'C61C6'H61A120.0°120.0°
C1'C61C6'C7'66.2°95.0°
C61C1'C6'AH6'1.2°0.3°
C1'C61H61H61A118.6°120.0°
N1'C2'N2'N3'179.3°180.0°
N1'C2'N3'C4'1.7°0.1°
C2'N1'C8AC4A1.0°0.0°
C2'N1'C8AN8'179.9°180.0°
N1'C2'N2'HN2'0.0°0.1°
N1'C2'N2'HN2A120.0°180.0°
C8AN1'C2'N2'179.2°180.0°
C8AN1'C2'N3'1.6°0.0°
N1'C8AC4AC4'0.5°0.0°
N1'C8AC4AC5'179.0°180.0°
N1'C8AC4AN8'179.1°180.0°
N1'C8AN8'C7'179.7°180.0°
N2'C2'N3'C4'179.1°180.0°
C2'N2'HN2'HN2A120.0°179.9°
C2'N3'C4'N4'179.5°180.0°
C2'N3'C4'C4A1.2°0.0°
N3'C2'N2'HN2'179.2°180.0°
N3'C2'N2'HN2A59.2°0.0°
C2'AO2'C21C26164.0°180.0°
O2'C2'AC3'C4'A179.7°180.0°
C2'AO2'C21H2176.0°60.0°
C2'AO2'C21H21A44.1°60.0°
O2'C2'AC3'H3'0.3°0.0°
C3'C2'AO2'C214.6°0.0°
C2'AC3'C4'AH3'180.0°180.0°
C2'AC3'C4'AC5'A0.3°0.0°
C2'AC3'C4'AH4'179.6°180.0°
O2'C21C26H21120.0°120.0°
O2'C21C26H21A120.0°120.0°
O2'C21H21H21A122.5°120.0°
O2'C21C26H2613.9°60.0°
O2'C21C26H26A106.1°60.0°
C21C26C3H368.6°60.0°
C21C26C3H3A51.4°60.0°
C26C21H21H21A122.5°120.0°
C21C26H26H26A117.4°120.0°
C3'C4'AC5'AH4'180.0°180.0°
C3'C4'AC5'AO5'179.3°180.0°
C3'C4'AC5'AC6'A1.1°0.0°
N3'C4'N4'C4A179.3°180.0°
N3'C4'C4AC5'179.0°180.0°
N3'C4'C4AC8A0.6°0.0°
N3'C4'N4'HN4'0.0°138.8°
N3'C4'N4'HN4A120.0°41.1°
N4'C4'C4AC5'1.7°0.0°
N4'C4'C4AC8A179.9°180.0°
C4'N4'HN4'HN4A120.0°179.9°
C4'C4AC5'C8A178.4°180.0°
C4'C4AC5'C511.3°0.0°
C4'C4AC5'C6'179.7°180.0°
C4'C4AC8AN8'179.6°180.0°
C4AC4'N4'HN4'179.3°41.2°
C4AC4'N4'HN4A59.3°138.9°
C4'AC5'AO5'C6'A178.2°180.0°
C4'AC5'AO5'C5A14.1°0.0°
C5'AC4'AC3'H3'179.7°180.0°
C4'AC5'AC6'AH6'178.4°180.0°
C44C45O46O47176.1°179.9°
C45C44C3H361.4°60.0°
C45C44C3H3A58.6°60.0°
C45C44H44H44A117.5°120.0°
O46C45C44H44105.6°120.1°
O46C45C44H44A134.4°119.9°
C45O47C1H1142.7°60.0°
C45O47C1H1A22.7°60.1°
O47C45C44H4470.5°60.0°
O47C45C44H44A49.5°60.0°
C4AC5'C51C6'178.4°180.0°
C4AC5'C6'C61179.4°180.0°
C4AC5'C6'C7'1.2°0.1°
C5'C4AC8AN8'1.9°0.0°
C4AC5'C51H5189.1°82.8°
C4AC5'C51H51A150.9°157.2°
C4AC5'C51H51B30.9°37.2°
C8AC4AC5'C51179.7°180.0°
C8AC4AC5'C6'1.9°0.0°
C4AC8AN8'C7'1.2°0.1°
C51C5'C6'C612.1°0.1°
C51C5'C6'C7'179.7°180.0°
C5'C51H51H51A120.0°120.0°
C5'C51H51H51B120.0°120.0°
C5'C51H51AH51B120.0°120.0°
C5'C6'C61C7'178.2°179.9°
C5'C6'C7'N8'0.5°0.1°
C6'C5'C51H5189.3°97.2°
C6'C5'C51H51A30.7°22.9°
C6'C5'C51H51B150.7°142.8°
C5'C6'C61H614.4°34.9°
C5'C6'C61H61A124.4°155.0°
C5'C6'C7'H7'179.5°180.0°
O5'C5'AC4'AH4'0.6°0.0°
C5'AO5'C5AH5A180.0°180.0°
C5'AO5'C5AH5AA60.0°60.0°
C5'AO5'C5AH5AB60.0°60.0°
O5'C5'AC6'AH6'0.0°0.0°
C6'AC5'AO5'C5A167.7°180.0°
C6'AC5'AC4'AH4'178.9°180.0°
O5'C5AH5AH5AA120.0°120.0°
O5'C5AH5AH5AB120.0°120.0°
O5'C5AH5AAH5AB120.0°120.0°
C61C6'C7'N8'178.8°180.0°
C6'C61H61H61A118.7°120.1°
C61C6'C7'H7'1.2°0.1°
C6'C7'N8'H7'180.0°179.9°
C6'C7'N8'C8A0.5°0.1°
C7'C6'C61H61173.8°145.0°
C7'C6'C61H61A53.8°24.9°
C8AN8'C7'H7'179.5°180.0°
H1C1C2H260.0°180.0°
H1C1C2H2A60.0°60.0°
H1C1C2H2B180.0°60.0°
H1AC1C2H260.0°60.0°
H1AC1C2H2A180.0°60.0°
H1AC1C2H2B60.0°180.0°
H2C2H2AH2B120.0°120.0°
H3C3C26H2651.4°60.0°
H3C3C26H26A171.4°180.0°
H3C3C44H44178.6°180.0°
H3C3C44H44A58.6°60.0°
H3AC3C26H26171.4°180.0°
H3AC3C26H26A68.6°60.0°
H3AC3C44H4461.4°60.0°
H3AC3C44H44A178.6°180.0°
H21C21C26H26106.1°60.0°
H21C21C26H26A133.9°180.0°
H21AC21C26H26133.8°180.0°
H21AC21C26H26A13.8°60.0°
H3'C3'C4'AH4'0.4°0.0°
H51C51H51AH51B120.0°120.0°
H5AC5AH5AAH5AB120.0°120.0°

224931

PDB entries from 2024-09-11

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