Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

D2O

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2doub1.33Å1.33ÅAromatic
N1C6sing1.33Å1.32ÅAromatic
C2N3sing1.32Å1.31ÅAromatic
C2NACsing1.38Å1.32Å
N3C4doub1.34Å1.32ÅAromatic
C4C5sing1.42Å1.38ÅAromatic
C4NAQsing1.33Å1.33ÅAromatic
C5C6doub1.42Å1.39ÅAromatic
C5CBBsing1.40Å1.41ÅAromatic
C6NADsing1.38Å1.30Å
CAAOATsing1.43Å1.39Å
CABCBBsing1.51Å1.50Å
CAECAFdoub1.38Å1.38ÅAromatic
CAECAGsing1.38Å1.39ÅAromatic
CAFCAHsing1.38Å1.39ÅAromatic
CAGCAIdoub1.38Å1.38ÅAromatic
CAHCAVdoub1.38Å1.39ÅAromatic
CAICAVsing1.38Å1.38ÅAromatic
CAJCAKdoub1.38Å1.38ÅAromatic
CAJCAWsing1.39Å1.38ÅAromatic
CAKCBCsing1.39Å1.37ÅAromatic
CALNAQdoub1.31Å1.32ÅAromatic
CALCAYsing1.39Å1.39ÅAromatic
CAMCAWdoub1.39Å1.38ÅAromatic
CAMCAZsing1.38Å1.40ÅAromatic
CANCAOsing1.53Å1.53Å
CANOAUsing1.43Å1.39Å
CAOCAVsing1.51Å1.55Å
CAPCAYsing1.51Å1.52Å
CAPCAZsing1.51Å1.52Å
OATCBCsing1.36Å1.34Å
OAUCAWsing1.36Å1.33Å
CAYCBBdoub1.37Å1.37ÅAromatic
CAZCBCdoub1.39Å1.37ÅAromatic
CAAHAAsing1.09Å1.10Å
CAAHAAAsing1.09Å1.10Å
CAAHAABsing1.09Å1.10Å
CABHABsing1.09Å1.10Å
CABHABAsing1.09Å1.10Å
CABHABBsing1.09Å1.10Å
NACHNACsing0.97Å1.00Å
NACHNAAsing0.97Å1.00Å
NADHNADsing0.97Å1.00Å
NADHNABsing0.97Å1.00Å
CAEHAEsing1.08Å1.08Å
CAFHAFsing1.08Å1.08Å
CAGHAGsing1.08Å1.08Å
CAHHAHsing1.08Å1.08Å
CAIHAIsing1.08Å1.08Å
CAJHAJsing1.08Å1.08Å
CAKHAKsing1.08Å1.08Å
CALHALsing1.08Å1.08Å
CAMHAMsing1.08Å1.08Å
CANHANsing1.09Å1.10Å
CANHANAsing1.09Å1.10Å
CAOHAOsing1.09Å1.10Å
CAOHAOAsing1.09Å1.10Å
CAPHAPsing1.09Å1.10Å
CAPHAPAsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6122.8°121.3°
N1C2N3119.5°122.8°
N1C2NAC121.6°118.6°
N1C6C5118.6°118.2°
N1C6NAD117.7°120.9°
N3C2NAC118.8°118.6°
C2N3C4121.4°120.5°
C2NACHNAC109.5°120.0°
C2NACHNAA109.5°120.0°
N3C4C5120.6°118.5°
N3C4NAQ118.2°121.7°
C5C4NAQ121.2°119.8°
C4C5C6117.0°118.6°
C4C5CBB116.9°119.3°
C4NAQCAL122.1°121.2°
C6C5CBB126.0°122.1°
C5C6NAD123.6°120.9°
C5CBBCAB125.7°121.0°
C5CBBCAY121.0°118.0°
C6NADHNAD109.5°120.0°
C6NADHNAB109.5°120.0°
CAAOATCBC103.0°117.0°
OATCAAHAA109.5°109.4°
OATCAAHAAA109.5°109.4°
OATCAAHAAB109.4°109.4°
CABCBBCAY113.3°121.0°
CBBCABHAB109.5°109.5°
CBBCABHABA109.5°109.4°
CBBCABHABB109.5°109.5°
CAFCAECAG121.4°120.0°
CAECAFCAH117.7°120.0°
CAFCAEHAE119.3°120.0°
CAECAFHAF121.1°120.0°
CAECAGCAI120.1°120.0°
CAGCAEHAE119.3°120.0°
CAECAGHAG119.9°120.0°
CAFCAHCAV121.4°120.0°
CAHCAFHAF121.1°120.0°
CAFCAHHAH119.3°120.0°
CAGCAICAV119.6°120.0°
CAICAGHAG119.9°120.0°
CAGCAIHAI120.2°120.0°
CAHCAVCAI119.7°120.0°
CAHCAVCAO120.5°120.0°
CAVCAHHAH119.3°120.0°
CAICAVCAO119.8°120.0°
CAVCAIHAI120.2°120.0°
CAKCAJCAW120.6°120.0°
CAJCAKCBC119.3°120.0°
CAKCAJHAJ119.7°120.0°
CAJCAKHAK120.3°120.0°
CAJCAWCAM120.1°120.0°
CAJCAWOAU117.5°120.0°
CAWCAJHAJ119.7°120.0°
CAKCBCOAT121.5°120.0°
CAKCBCCAZ121.0°120.0°
CBCCAKHAK120.3°120.0°
NAQCALCAY120.9°121.7°
NAQCALHAL119.5°119.2°
CALCAYCAP122.1°120.0°
CALCAYCBB117.9°119.9°
CAYCALHAL119.5°119.1°
CAWCAMCAZ119.0°120.0°
CAMCAWOAU122.3°120.0°
CAWCAMHAM120.5°120.0°
CAMCAZCAP121.8°120.0°
CAMCAZCBC119.8°120.0°
CAZCAMHAM120.5°120.0°
CAOCANOAU100.5°109.5°
CANCAOCAV113.2°109.4°
CAOCANHAN112.5°109.5°
CAOCANHANA112.6°109.5°
CANCAOHAO108.2°109.4°
CANCAOHAOA108.3°109.5°
CANOAUCAW119.2°117.0°
OAUCANHAN112.6°109.4°
OAUCANHANA112.6°109.5°
CAVCAOHAO108.2°109.5°
CAVCAOHAOA108.2°109.5°
CAYCAPCAZ114.4°109.5°
CAPCAYCBB119.9°120.1°
CAYCAPHAP107.9°109.5°
CAYCAPHAPA107.9°109.5°
CAPCAZCBC118.3°120.0°
CAZCAPHAP107.9°109.4°
CAZCAPHAPA107.8°109.5°
OATCBCCAZ117.5°120.0°
HAACAAHAAA109.5°109.5°
HAACAAHAAB109.5°109.6°
HAAACAAHAAB109.5°109.5°
HABCABHABA109.4°109.4°
HABCABHABB109.5°109.5°
HABACABHABB109.5°109.4°
HNACNACHNAA109.4°120.0°
HNADNADHNAB109.5°120.0°
HANCANHANA106.2°109.5°
HAOCAOHAOA110.7°109.5°
HAPCAPHAPA111.0°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2N3NAC179.3°180.0°
N1C2N3C40.5°0.0°
C2N1C6C50.2°0.0°
C2N1C6NAD180.0°180.0°
N1C2NACHNAC0.0°0.1°
N1C2NACHNAA120.0°180.0°
C6N1C2N30.1°0.0°
C6N1C2NAC179.3°180.0°
N1C6C5C40.1°0.0°
N1C6C5NAD179.8°180.0°
N1C6C5CBB179.0°180.0°
N1C6NADHNAD0.0°138.8°
N1C6NADHNAB120.0°41.3°
C2N3C4C50.7°0.1°
C2N3C4NAQ180.0°180.0°
N3C2NACHNAC179.3°180.0°
N3C2NACHNAA59.3°0.0°
NACC2N3C4179.8°180.0°
C2NACHNACHNAA120.0°179.9°
N3C4C5NAQ179.3°180.0°
N3C4C5C60.4°0.1°
N3C4C5CBB178.7°180.0°
N3C4NAQCAL178.6°180.0°
C4C5C6CBB178.9°179.9°
C4C5C6NAD179.8°180.0°
C4C5CBBCAB179.9°180.0°
C5C4NAQCAL0.7°0.0°
C4C5CBBCAY0.2°0.0°
NAQC4C5C6179.7°180.0°
NAQC4C5CBB0.6°0.0°
C4NAQCALCAY0.4°0.1°
C4NAQCALHAL179.6°180.0°
C6C5CBBCAB1.0°0.0°
C6C5CBBCAY179.2°180.0°
C5C6NADHNAD179.8°41.2°
C5C6NADHNAB59.7°138.7°
CBBC5C6NAD1.2°0.0°
C5CBBCABCAY179.9°180.0°
C5CBBCAYCAL0.1°0.1°
C5CBBCAYCAP179.9°180.0°
C5CBBCABHAB89.9°82.9°
C5CBBCABHABA150.1°157.2°
C5CBBCABHABB30.1°37.2°
C6NADHNADHNAB120.0°179.9°
CAAOATCBCCAK1.0°0.0°
CAAOATCBCCAZ178.5°180.0°
OATCAAHAAHAAA120.0°119.9°
OATCAAHAAHAAB120.0°120.0°
OATCAAHAAAHAAB120.0°120.0°
CABCBBCAYCAL179.8°179.9°
CABCBBCAYCAP0.2°0.0°
CBBCABHABHABA120.0°119.9°
CBBCABHABHABB120.0°120.1°
CBBCABHABAHABB120.0°120.0°
CAFCAECAGHAE180.0°179.6°
CAECAFCAHHAF180.0°179.9°
CAFCAECAGCAI0.3°0.1°
CAECAFCAHCAV0.1°0.0°
CAFCAECAGHAG179.7°179.9°
CAECAFCAHHAH179.9°179.9°
CAGCAECAFCAH0.2°0.1°
CAECAGCAIHAG180.0°179.9°
CAECAGCAICAV0.0°0.1°
CAGCAECAFHAF179.8°180.0°
CAECAGCAIHAI180.0°179.9°
CAFCAHCAVHAH180.0°179.9°
CAFCAHCAVCAI0.3°0.0°
CAFCAHCAVCAO179.3°179.9°
CAHCAFCAEHAE179.7°179.7°
CAGCAICAVCAH0.3°0.0°
CAGCAICAVHAI180.0°180.0°
CAGCAICAVCAO179.4°180.0°
CAICAGCAEHAE179.7°179.7°
CAHCAVCAICAO179.6°179.9°
CAHCAVCAOCAN66.2°90.0°
CAVCAHCAFHAF179.9°179.9°
CAHCAVCAIHAI179.7°180.0°
CAHCAVCAOHAO173.8°29.9°
CAHCAVCAOHAOA53.8°150.0°
CAICAVCAOCAN113.4°90.1°
CAVCAICAGHAG180.0°180.0°
CAICAVCAHHAH179.7°180.0°
CAICAVCAOHAO6.5°150.0°
CAICAVCAOHAOA126.5°29.9°
CAKCAJCAWHAJ180.0°179.8°
CAJCAKCBCHAK180.0°179.9°
CAKCAJCAWCAM1.4°0.1°
CAJCAKCBCOAT179.6°180.0°
CAKCAJCAWOAU179.8°180.0°
CAJCAKCBCCAZ0.2°0.0°
CAWCAJCAKCBC1.3°0.0°
CAJCAWCAMOAU178.7°179.9°
CAJCAWCAMCAZ0.4°0.1°
CAJCAWOAUCAN168.9°0.1°
CAWCAJCAKHAK178.7°180.0°
CAJCAWCAMHAM179.6°179.9°
CAKCBCCAZCAM0.8°0.0°
CAKCBCCAZCAP178.8°180.0°
CAKCBCOATCAZ179.5°179.9°
CBCCAKCAJHAJ178.7°179.7°
NAQCALCAYHAL180.0°180.0°
NAQCALCAYCAP180.0°180.0°
NAQCALCAYCBB0.0°0.1°
CALCAYCAPCBB180.0°179.9°
CALCAYCAPCAZ3.6°95.0°
CALCAYCAPHAP116.5°25.0°
CALCAYCAPHAPA123.5°145.1°
CAWCAMCAZHAM180.0°180.0°
CAMCAWOAUCAN12.3°180.0°
CAWCAMCAZCAP178.7°180.0°
CAWCAMCAZCBC0.7°0.0°
CAMCAWCAJHAJ178.7°179.7°
CAMCAZCAPCAY84.5°95.0°
CAMCAZCAPCBC178.0°180.0°
CAMCAZCBCOAT178.7°180.0°
CAZCAMCAWOAU179.1°180.0°
CAMCAZCAPHAP35.5°145.0°
CAMCAZCAPHAPA155.5°25.0°
CAOCANOAUHAN120.0°120.0°
CAOCANOAUHANA120.0°120.0°
CANCAOCAVHAO120.0°120.0°
CANCAOCAVHAOA120.0°120.0°
CAOCANOAUCAW165.9°180.0°
CAOCANHANHANA123.6°120.0°
CANCAOHAOHAOA118.5°120.0°
OAUCANCAOCAV69.6°180.0°
OAUCANHANHANA123.6°120.0°
OAUCANCAOHAO170.4°60.0°
OAUCANCAOHAOA50.4°60.0°
CAOCAVCAHHAH0.7°0.0°
CAOCAVCAIHAI0.7°0.1°
CAVCAOCANHAN170.4°60.0°
CAVCAOCANHANA50.5°60.0°
CAVCAOHAOHAOA118.5°120.0°
CAYCAPCAZHAP120.0°120.0°
CAYCAPCAZHAPA120.0°120.0°
CAYCAPCAZCBC97.5°85.1°
CAPCAYCALHAL0.0°0.0°
CAYCAPHAPHAPA118.0°120.0°
CAPCAZCBCOAT0.6°0.1°
CAZCAPCAYCBB176.4°85.0°
CAPCAZCAMHAM1.3°0.0°
CAZCAPHAPHAPA117.9°120.0°
CBCOATCAAHAA180.0°179.9°
CBCOATCAAHAAA60.0°60.0°
CBCOATCAAHAAB60.0°60.0°
OATCBCCAKHAK0.3°0.0°
OAUCAWCAJHAJ0.1°0.2°
OAUCAWCAMHAM0.9°0.0°
CAWOAUCANHAN45.9°60.0°
CAWOAUCANHANA74.1°60.0°
CAYCBBCABHAB89.9°97.1°
CAYCBBCABHABA30.0°22.8°
CAYCBBCABHABB150.0°142.8°
CBBCAYCALHAL180.0°180.0°
CBBCAYCAPHAP63.6°155.0°
CBBCAYCAPHAPA56.4°35.0°
CAZCBCCAKHAK179.8°179.9°
CBCCAZCAMHAM179.3°180.0°
CBCCAZCAPHAP142.5°34.9°
CBCCAZCAPHAPA22.5°155.0°
HAACAAHAAAHAAB120.0°120.1°
HABCABHABAHABB120.0°120.0°
HAECAECAFHAF0.3°0.5°
HAECAECAGHAG0.3°0.3°
HAFCAFCAHHAH0.1°0.0°
HAGCAGCAIHAI0.0°0.0°
HAJCAJCAKHAK1.3°0.2°
HANCANCAOHAO50.4°60.0°
HANCANCAOHAOA69.6°180.0°
HANACANCAOHAO69.5°180.0°
HANACANCAOHAOA170.5°60.0°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon