Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

D24

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C7N2sing1.47Å1.28Å
C7N1sing1.47Å1.27Å
C7C4sing1.51Å1.44Å
C7H7sing1.09Å1.11Å
N2C8sing1.47Å1.30Å
N2HN2sing1.01Å1.02Å
N1H11Asing1.01Å1.02Å
N1H12Asing1.01Å1.02Å
C8C9sing1.51Å1.48Å
C8C12sing1.51Å1.51Å
C8H8sing1.09Å1.11Å
C9C10doub1.33Å1.51Å
C9H9sing1.08Å1.10Å
C10C11sing1.46Å1.46Å
C10H10sing1.08Å1.10Å
C11C12doub1.33Å1.47Å
C11H11sing1.08Å1.10Å
C12H12sing1.08Å1.10Å
C1C2doub1.40Å1.40ÅAromatic
C1C6sing1.40Å1.40ÅAromatic
C1CAsing1.48Å1.43ÅAromatic
C2C3sing1.38Å1.43ÅAromatic
C2H2sing1.08Å1.10Å
C3C4doub1.38Å1.40ÅAromatic
C3H3sing1.08Å1.10Å
C4C5sing1.38Å1.39ÅAromatic
C5C6doub1.38Å1.42ÅAromatic
C5H5sing1.08Å1.10Å
C6H6sing1.08Å1.10Å
CAO1sing1.35Å1.40ÅAromatic
CACBdoub1.36Å1.38ÅAromatic
O1CA'sing1.35Å1.36ÅAromatic
CBCB'sing1.40Å1.43ÅAromatic
CBHBsing1.08Å1.10Å
CB'CA'doub1.36Å1.37ÅAromatic
CB'HB'sing1.08Å1.10Å
CA'C1'sing1.48Å1.42ÅAromatic
C1'C2'doub1.40Å1.41ÅAromatic
C1'C6'sing1.40Å1.38ÅAromatic
C2'C3'sing1.38Å1.40ÅAromatic
C2'H2'sing1.08Å1.10Å
C3'C4'doub1.38Å1.41ÅAromatic
C3'H3'sing1.08Å1.10Å
C4'C5'sing1.38Å1.40ÅAromatic
C4'C7'sing1.51Å1.51Å
C5'C6'doub1.38Å1.39ÅAromatic
C5'H5'sing1.08Å1.10Å
C6'H6'sing1.08Å1.10Å
C7'N2'sing1.47Å1.36Å
C7'N1'sing1.47Å1.34Å
C7'H7'sing1.09Å1.11Å
N2'C8'sing1.47Å1.35Å
N2'HN2'sing1.01Å1.02Å
N1'H1'1sing1.01Å1.02Å
N1'H1'2sing1.01Å1.02Å
C8'C9'sing1.51Å1.49Å
C8'CCXsing1.51Å1.53Å
C8'H8'sing1.09Å1.12Å
C9'CAXdoub1.33Å1.50Å
C9'H9'sing1.08Å1.10Å
CAXCBXsing1.46Å1.51Å
CAXH10'sing1.08Å1.10Å
CBXCCXdoub1.33Å1.53Å
CBXH11'sing1.08Å1.10Å
CCXH12'sing1.08Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N2C7N1120.3°109.5°
N2C7C4119.1°109.5°
N2C7H7101.7°109.5°
C7N2C8131.4°106.7°
C7N2HN2104.6°106.7°
N1C7C4120.5°109.5°
N1C7H773.0°109.5°
C7N1H11A120.3°106.7°
C7N1H12A108.3°106.7°
C4C7H797.8°109.5°
C7C4C3120.9°119.9°
C7C4C5117.9°119.8°
C8N2HN2104.6°106.7°
N2C8C9119.5°110.3°
N2C8C1293.1°110.4°
N2C8H8113.1°110.3°
H11AN1H12A108.4°106.7°
C9C8C12106.8°105.1°
C9C8H8101.0°110.3°
C8C9C10106.0°106.8°
C8C9H9126.5°126.6°
C12C8H8124.7°110.4°
C8C12C11106.6°106.9°
C8C12H12127.8°126.6°
C10C9H9127.6°126.5°
C9C10C11108.9°110.6°
C9C10H10126.8°124.7°
C11C10H10124.3°124.7°
C10C11C12108.0°110.6°
C10C11H11125.8°124.7°
C12C11H11126.3°124.6°
C11C12H12125.6°126.6°
C2C1C6119.7°119.7°
C2C1CA122.5°120.2°
C1C2C3119.9°119.8°
C1C2H2119.2°120.0°
C6C1CA117.9°120.2°
C1C6C5120.5°119.9°
C1C6H6119.3°120.0°
C1CAO1116.4°125.8°
C1CACB131.9°125.8°
C3C2H2120.9°120.1°
C2C3C4119.4°120.2°
C2C3H3121.3°119.8°
C4C3H3119.3°119.9°
C3C4C5121.1°120.3°
C4C5C6119.5°120.1°
C4C5H5119.2°119.9°
C6C5H5121.3°120.0°
C5C6H6120.2°120.1°
O1CACB111.7°108.4°
CAO1CA'103.9°109.4°
CACBCB'105.5°106.9°
CACBHB125.9°126.5°
O1CA'CB'113.0°108.3°
O1CA'C1'114.4°125.8°
CB'CBHB128.6°126.6°
CBCB'CA'105.7°107.0°
CBCB'HB'128.7°126.5°
CA'CB'HB'125.6°126.5°
CB'CA'C1'132.6°125.8°
CA'C1'C2'120.5°120.1°
CA'C1'C6'118.0°120.2°
C2'C1'C6'121.5°119.7°
C1'C2'C3'120.2°119.9°
C1'C2'H2'120.4°120.1°
C1'C6'C5'118.2°119.8°
C1'C6'H6'120.4°120.1°
C3'C2'H2'119.5°120.0°
C2'C3'C4'118.7°120.1°
C2'C3'H3'120.1°120.0°
C4'C3'H3'121.2°119.9°
C3'C4'C5'119.5°120.3°
C3'C4'C7'122.5°119.9°
C5'C4'C7'118.0°119.8°
C4'C5'C6'121.9°120.1°
C4'C5'H5'119.3°120.0°
C4'C7'N2'126.5°109.5°
C4'C7'N1'116.8°109.5°
C4'C7'H7'64.8°109.4°
C6'C5'H5'118.8°119.9°
C5'C6'H6'121.4°120.1°
N2'C7'N1'116.6°109.5°
N2'C7'H7'66.9°109.5°
C7'N2'C8'121.8°106.8°
C7'N2'HN2'107.8°106.7°
N1'C7'H7'158.1°109.4°
C7'N1'H1'1116.9°106.6°
C7'N1'H1'2109.6°106.7°
C8'N2'HN2'107.8°106.7°
N2'C8'C9'114.2°110.3°
N2'C8'CCX106.5°110.3°
N2'C8'H8'106.0°110.3°
H1'1N1'H1'2109.5°106.7°
C9'C8'CCX101.3°105.1°
C9'C8'H8'110.9°110.3°
C8'C9'CAX113.0°106.8°
C8'C9'H9'123.2°126.6°
CCXC8'H8'118.1°110.4°
C8'CCXCBX112.7°106.8°
C8'CCXH12'123.7°126.6°
CAXC9'H9'123.7°126.6°
C9'CAXCBX106.4°110.7°
C9'CAXH10'126.7°124.6°
CBXCAXH10'126.9°124.7°
CAXCBXCCX104.0°110.6°
CAXCBXH11'127.5°124.7°
CCXCBXH11'128.4°124.7°
CBXCCXH12'123.7°126.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N2C7N1C4177.2°120.0°
N2C7N1H793.8°120.0°
N2C7C4H7108.0°120.0°
C7N2C8HN2125.3°113.8°
N2C7N1H11A180.0°60.1°
N2C7N1H12A54.8°173.8°
C7N2C8C950.7°150.0°
C7N2C8C12162.0°94.4°
C7N2C8H867.9°27.9°
N2C7C4C337.7°53.7°
N2C7C4C5142.1°126.0°
N1C7C4H774.8°120.0°
N1C7N2C878.1°75.1°
N1C7N2HN247.2°171.1°
C7N1H11AH12A125.2°113.7°
N1C7C4C3145.1°66.3°
N1C7C4C535.1°114.0°
C4C7N2C8104.6°164.9°
C4C7N2HN2130.0°51.1°
C4C7N1H11A2.8°59.9°
C4C7N1H12A122.4°53.8°
C7C4C3C2180.0°179.9°
C7C4C3C5179.8°179.8°
C7C4C3H30.0°0.0°
C7C4C5C6179.9°179.8°
C7C4C5H50.1°0.2°
H7C7N2C81.2°44.8°
H7C7N2HN2124.1°68.9°
H7C7N1H11A86.2°180.0°
H7C7N1H12A148.5°66.3°
H7C7C4C370.3°173.7°
H7C7C4C5109.9°6.0°
N2C8C9C12103.6°119.0°
N2C8C9H8124.7°122.1°
N2C8C12H8121.1°122.2°
N2C8C9C10120.6°118.9°
N2C8C9H959.4°61.1°
N2C8C12C11142.2°118.8°
N2C8C12H1237.8°61.1°
HN2N2C8C974.6°36.2°
HN2N2C8C1236.7°151.9°
HN2N2C8H8166.8°85.9°
C9C8C12H8116.8°118.9°
C8C9C10H9180.0°180.0°
C8C9C10C117.8°0.0°
C8C9C10H10172.2°180.0°
C9C8C12C1120.1°0.1°
C9C8C12H12159.9°180.0°
C12C8C9C1016.9°0.1°
C12C8C9H9163.0°180.0°
C8C12C11C1015.2°0.0°
C8C12C11H12180.0°179.9°
C8C12C11H11164.7°180.0°
H8C8C9C10114.7°119.0°
H8C8C9H965.3°61.0°
H8C8C12C1196.7°118.9°
H8C8C12H1283.3°61.2°
C9C10C11H10180.0°180.0°
C9C10C11C124.8°0.0°
C9C10C11H11175.2°180.0°
H9C9C10C11172.2°180.0°
H9C9C10H107.8°0.0°
C10C11C12H11180.0°180.0°
C10C11C12H12164.8°180.0°
H10C10C11C12175.2°180.0°
H10C10C11H114.8°0.0°
H11C11C12H1215.2°0.1°
C2C1C6CA179.1°179.9°
C1C2C3H2180.0°179.9°
C1C2C3C40.2°0.1°
C1C2C3H3179.8°180.0°
C2C1C6C50.2°0.3°
C2C1C6H6179.7°180.0°
C2C1CAO1179.5°0.1°
C2C1CACB0.2°179.7°
C6C1C2C30.1°0.0°
C6C1C2H2179.9°179.9°
C1C6C5C40.1°0.5°
C1C6C5H6180.0°179.7°
C1C6C5H5179.9°180.0°
C6C1CAO10.4°180.0°
C6C1CACB179.2°0.3°
CAC1C2C3179.0°179.9°
CAC1C2H21.0°0.0°
CAC1C6C5178.9°179.8°
CAC1C6H61.2°0.1°
C1CAO1CB179.7°179.7°
C1CAO1CA'178.7°180.0°
C1CACBCB'180.0°179.9°
C1CACBHB0.0°0.2°
C2C3C4H3180.0°180.0°
C2C3C4C50.2°0.2°
H2C2C3C4179.9°180.0°
H2C2C3H30.2°0.1°
C3C4C5C60.1°0.4°
C3C4C5H5179.9°180.0°
H3C3C4C5179.7°179.8°
C4C5C6H5179.9°179.5°
C4C5C6H6179.8°179.8°
H5C5C6H60.1°0.2°
O1CACBCB'0.4°0.4°
O1CACBHB179.6°179.9°
CAO1CA'CB'2.4°0.0°
CAO1CA'C1'176.3°180.0°
CBCAO1CA'1.6°0.3°
CACBCB'HB180.0°179.7°
CACBCB'CA'1.0°0.4°
CACBCB'HB'179.0°179.9°
O1CA'CB'CB2.2°0.2°
O1CA'CB'C1'178.3°180.0°
O1CA'CB'HB'177.9°180.0°
O1CA'C1'C2'178.1°0.1°
O1CA'C1'C6'0.1°179.8°
CBCB'CA'HB'180.0°179.8°
CBCB'CA'C1'176.1°179.8°
HBCBCB'CA'178.9°179.9°
HBCBCB'HB'1.0°0.1°
CB'CA'C1'C2'0.1°180.0°
CB'CA'C1'C6'178.2°0.2°
HB'CB'CA'C1'3.8°0.0°
CA'C1'C2'C6'178.0°179.9°
CA'C1'C2'C3'178.3°180.0°
CA'C1'C2'H2'1.6°0.1°
CA'C1'C6'C5'178.1°179.7°
CA'C1'C6'H6'1.9°0.2°
C1'C2'C3'H2'179.9°180.0°
C1'C2'C3'C4'0.5°0.0°
C1'C2'C3'H3'179.5°180.0°
C2'C1'C6'C5'0.1°0.4°
C2'C1'C6'H6'179.9°179.9°
C6'C1'C2'C3'0.4°0.2°
C6'C1'C2'H2'179.6°179.8°
C1'C6'C5'C4'0.0°0.5°
C1'C6'C5'H6'179.9°179.5°
C1'C6'C5'H5'180.0°179.8°
C2'C3'C4'H3'179.9°180.0°
C2'C3'C4'C5'0.5°0.0°
C2'C3'C4'C7'178.7°180.0°
H2'C2'C3'C4'179.4°180.0°
H2'C2'C3'H3'0.5°0.0°
C3'C4'C5'C7'179.2°180.0°
C3'C4'C5'C6'0.2°0.3°
C3'C4'C5'H5'179.9°180.0°
C3'C4'C7'N2'45.2°150.0°
C3'C4'C7'N1'132.0°30.0°
C3'C4'C7'H7'72.4°90.0°
H3'C3'C4'C5'179.6°179.9°
H3'C3'C4'C7'1.2°0.0°
C4'C5'C6'H5'179.9°179.7°
C4'C5'C6'H6'179.9°180.0°
C5'C4'C7'N2'135.7°30.0°
C5'C4'C7'N1'47.2°150.1°
C5'C4'C7'H7'108.4°90.0°
C7'C4'C5'C6'179.0°179.7°
C7'C4'C5'H5'0.9°0.0°
C4'C7'N2'N1'177.1°120.1°
C4'C7'N2'H7'26.7°120.0°
C4'C7'N1'H7'88.7°119.9°
C4'C7'N2'C8'169.5°150.0°
C4'C7'N2'HN2'44.3°96.2°
C4'C7'N1'H1'1179.9°60.0°
C4'C7'N1'H1'254.7°173.8°
H5'C5'C6'H6'0.0°0.2°
N2'C7'N1'H7'93.9°120.0°
C7'N2'C8'HN2'125.3°113.8°
N2'C7'N1'H1'12.5°60.1°
N2'C7'N1'H1'2122.7°53.7°
C7'N2'C8'C9'125.2°150.0°
C7'N2'C8'CCX123.9°94.3°
C7'N2'C8'H8'2.7°27.9°
N1'C7'N2'C8'13.3°90.0°
N1'C7'N2'HN2'138.6°23.9°
C7'N1'H1'1H1'2125.2°113.8°
H7'C7'N2'C8'142.8°30.0°
H7'C7'N2'HN2'17.5°143.8°
H7'C7'N1'H1'191.3°180.0°
H7'C7'N1'H1'2143.5°66.3°
N2'C8'C9'CCX114.1°118.9°
N2'C8'C9'H8'119.8°122.1°
N2'C8'CCXH8'119.0°122.1°
N2'C8'C9'CAX120.3°118.9°
N2'C8'C9'H9'59.8°61.1°
N2'C8'CCXCBX115.3°118.9°
N2'C8'CCXH12'64.7°61.1°
HN2'N2'C8'C9'0.1°36.2°
HN2'N2'C8'CCX110.9°151.9°
HN2'N2'C8'H8'122.6°85.9°
C9'C8'CCXH8'121.3°118.9°
C8'C9'CAXH9'180.0°180.0°
C8'C9'CAXCBX14.5°0.0°
C8'C9'CAXH10'165.6°180.0°
C9'C8'CCXCBX4.4°0.0°
C9'C8'CCXH12'175.6°180.0°
CCXC8'C9'CAX6.2°0.0°
CCXC8'C9'H9'173.8°180.0°
C8'CCXCBXCAX12.9°0.0°
C8'CCXCBXH12'180.0°180.0°
C8'CCXCBXH11'167.1°180.0°
H8'C8'C9'CAX120.0°119.0°
H8'C8'C9'H9'60.0°61.0°
H8'C8'CCXCBX125.7°118.9°
H8'C8'CCXH12'54.3°61.0°
C9'CAXCBXH10'180.0°180.0°
C9'CAXCBXCCX15.7°0.0°
C9'CAXCBXH11'164.2°180.0°
H9'C9'CAXCBX165.6°180.0°
H9'C9'CAXH10'14.4°0.0°
CAXCBXCCXH11'179.9°180.0°
CAXCBXCCXH12'167.1°180.0°
H10'CAXCBXCCX164.3°180.0°
H10'CAXCBXH11'15.8°0.0°
H11'CBXCCXH12'12.9°0.1°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon