D1K

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	sing	1.34Å	1.37Å
N1	C6	sing	1.35Å	1.43Å
N1	C1'	sing	1.46Å	1.47Å
C2	O2	doub	1.22Å	1.24Å
C2	N3	sing	1.33Å	1.38Å
N3	C4	doub	1.33Å	1.42Å
C4	C5	sing	1.42Å	1.42Å
C4	O5	sing	1.34Å	1.38Å
C5	C6	doub	1.38Å	1.33Å
C5	C7	sing	1.47Å	1.35Å
O5	C8	sing	1.35Å	1.38Å
C7	C8	doub	1.34Å	1.34Å
C8	C9	sing	1.51Å	1.51Å
C9	C10	sing	1.53Å	1.53Å
C1'	C2'	sing	1.53Å	1.51Å
C1'	O5'	sing	1.43Å	1.48Å
C10	C11	sing	1.53Å	1.56Å
C2'	O2'	sing	1.43Å	1.43Å
C2'	C3'	sing	1.53Å	1.56Å
C3'	O3'	sing	1.43Å	1.38Å
C3'	C4'	sing	1.53Å	1.53Å
C4'	O4'	sing	1.43Å	1.45Å
C4'	C5'	sing	1.53Å	1.60Å
C5'	O5'	sing	1.43Å	1.41Å
C5'	C6'	sing	1.53Å	1.53Å
C6'	O6'	sing	1.43Å	1.45Å
C6	H6	sing	1.08Å	1.08Å
C7	H7	sing	1.08Å	1.08Å
C9	H9	sing	1.09Å	1.10Å
C9	H9A	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
C10	H10	sing	1.09Å	1.10Å
C10	H10A	sing	1.09Å	1.10Å
C11	H11	sing	1.09Å	1.10Å
C11	H11A	sing	1.09Å	1.10Å
C11	H11B	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO2'	sing	0.97Å	0.95Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	HO4'	sing	0.97Å	0.95Å
C5'	H5'	sing	1.09Å	1.10Å
C6'	H6'	sing	1.09Å	1.10Å
C6'	H6'A	sing	1.09Å	1.10Å
O6'	HO6'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N1	C6	122.2°	120.4°
C2	N1	C1'	117.1°	119.8°
N1	C2	O2	123.3°	119.0°
N1	C2	N3	119.2°	122.0°
C6	N1	C1'	120.7°	119.8°
N1	C6	C5	116.6°	118.6°
N1	C6	H6	121.7°	120.7°
N1	C1'	C2'	113.9°	109.5°
N1	C1'	O5'	104.5°	109.5°
N1	C1'	H1'	109.2°	109.5°
O2	C2	N3	117.5°	119.1°
C2	N3	C4	115.3°	120.7°
N3	C4	C5	115.4°	119.0°
N3	C4	O5	108.8°	134.1°
C5	C4	O5	102.5°	107.0°
C4	C5	C6	119.8°	119.4°
C4	C5	C7	104.0°	105.4°
C4	O5	C8	97.0°	111.1°
C6	C5	C7	134.1°	135.3°
C5	C6	H6	121.7°	120.8°
C5	C7	C8	105.0°	106.1°
C5	C7	H7	127.5°	126.9°
O5	C8	C7	109.3°	110.4°
O5	C8	C9	125.2°	124.8°
C7	C8	C9	122.1°	124.8°
C8	C7	H7	127.5°	127.0°
C8	C9	C10	114.9°	109.5°
C8	C9	H9	108.1°	109.5°
C8	C9	H9A	108.1°	109.5°
C9	C10	C11	105.6°	109.5°
C10	C9	H9	108.1°	109.4°
C10	C9	H9A	108.1°	109.5°
C9	C10	H10	110.4°	109.5°
C9	C10	H10A	110.4°	109.5°
C2'	C1'	O5'	111.0°	109.4°
C1'	C2'	O2'	110.3°	109.6°
C1'	C2'	C3'	106.5°	109.2°
C2'	C1'	H1'	108.8°	109.4°
C1'	C2'	H2'	108.2°	109.5°
C1'	O5'	C5'	106.2°	114.1°
O5'	C1'	H1'	109.2°	109.5°
C11	C10	H10	110.4°	109.5°
C11	C10	H10A	110.4°	109.5°
C10	C11	H11	109.5°	109.5°
C10	C11	H11A	109.5°	109.5°
C10	C11	H11B	109.5°	109.5°
O2'	C2'	C3'	114.7°	109.5°
O2'	C2'	H2'	109.3°	109.5°
C2'	O2'	HO2'	109.5°	114.0°
C2'	C3'	O3'	110.7°	109.5°
C2'	C3'	C4'	109.5°	109.1°
C3'	C2'	H2'	107.6°	109.5°
C2'	C3'	H3'	108.0°	109.5°
O3'	C3'	C4'	109.7°	109.6°
O3'	C3'	H3'	110.5°	109.5°
C3'	O3'	HO3'	109.5°	114.0°
C3'	C4'	O4'	107.1°	109.6°
C3'	C4'	C5'	111.5°	109.1°
C4'	C3'	H3'	108.3°	109.6°
C3'	C4'	H4'	108.8°	109.5°
O4'	C4'	C5'	111.5°	109.5°
O4'	C4'	H4'	109.9°	109.6°
C4'	O4'	HO4'	109.5°	114.0°
C4'	C5'	O5'	110.8°	109.4°
C4'	C5'	C6'	114.4°	109.5°
C5'	C4'	H4'	108.0°	109.6°
C4'	C5'	H5'	109.0°	109.5°
O5'	C5'	C6'	101.0°	109.4°
O5'	C5'	H5'	111.6°	109.5°
C5'	C6'	O6'	112.0°	109.5°
C6'	C5'	H5'	109.9°	109.5°
C5'	C6'	H6'	108.8°	109.4°
C5'	C6'	H6'A	108.8°	109.5°
O6'	C6'	H6'	108.8°	109.4°
O6'	C6'	H6'A	108.8°	109.5°
C6'	O6'	HO6'	109.5°	114.0°
H9	C9	H9A	109.5°	109.5°
H10	C10	H10A	109.5°	109.5°
H11	C11	H11A	109.5°	109.5°
H11	C11	H11B	109.5°	109.5°
H11A	C11	H11B	109.5°	109.5°
H6'	C6'	H6'A	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	N1	C6	C1'	177.5°	179.8°
N1	C2	O2	N3	178.6°	180.0°
N1	C2	N3	C4	22.4°	0.0°
C2	N1	C6	C5	0.4°	0.1°
C2	N1	C1'	C2'	137.2°	65.1°
C2	N1	C1'	O5'	101.5°	54.9°
C2	N1	C6	H6	179.6°	180.0°
C2	N1	C1'	H1'	15.3°	175.0°
C6	N1	C2	O2	178.7°	180.0°
C6	N1	C2	N3	2.8°	0.0°
N1	C6	C5	C4	17.2°	0.0°
N1	C6	C5	H6	180.0°	179.9°
N1	C6	C5	C7	177.4°	180.0°
C6	N1	C1'	C2'	45.2°	114.7°
C6	N1	C1'	O5'	76.1°	125.3°
C6	N1	C1'	H1'	167.1°	5.3°
C1'	N1	C2	O2	1.1°	0.2°
C1'	N1	C2	N3	179.7°	179.7°
C1'	N1	C6	C5	177.1°	179.7°
N1	C1'	C2'	O5'	117.7°	120.0°
N1	C1'	C2'	H1'	122.1°	120.0°
N1	C1'	O5'	H1'	116.8°	120.1°
N1	C1'	C2'	O2'	50.4°	62.5°
N1	C1'	C2'	C3'	175.4°	177.6°
N1	C1'	O5'	C5'	164.8°	178.9°
C1'	N1	C6	H6	2.9°	0.2°
N1	C1'	C2'	H2'	69.2°	57.7°
O2	C2	N3	C4	158.9°	180.0°
C2	N3	C4	C5	38.9°	0.0°
C2	N3	C4	O5	153.3°	180.0°
N3	C4	C5	O5	118.0°	180.0°
N3	C4	C5	C6	37.3°	0.0°
N3	C4	C5	C7	157.2°	180.0°
N3	C4	O5	C8	168.1°	180.0°
C4	C5	C6	C7	160.2°	180.0°
C5	C4	O5	C8	45.5°	0.0°
C4	C5	C7	C8	14.5°	0.0°
C4	C5	C6	H6	162.8°	179.9°
C4	C5	C7	H7	165.5°	180.0°
O5	C4	C5	C6	155.3°	180.0°
O5	C4	C5	C7	39.2°	0.0°
C4	O5	C8	C7	38.5°	0.1°
C4	O5	C8	C9	162.1°	180.0°
C6	C5	C7	C8	176.9°	180.0°
C6	C5	C7	H7	3.1°	0.0°
C5	C7	C8	O5	15.2°	0.1°
C5	C7	C8	H7	180.0°	179.9°
C5	C7	C8	C9	175.3°	180.0°
C7	C5	C6	H6	2.6°	0.1°
O5	C8	C7	C9	160.1°	179.9°
O5	C8	C9	C10	126.3°	84.9°
O5	C8	C7	H7	164.8°	180.0°
O5	C8	C9	H9	112.9°	35.1°
O5	C8	C9	H9A	5.5°	155.1°
C7	C8	C9	C10	76.8°	95.0°
C7	C8	C9	H9	43.9°	145.1°
C7	C8	C9	H9A	162.4°	25.1°
C8	C9	C10	H9	120.8°	120.0°
C8	C9	C10	H9A	120.8°	120.0°
C8	C9	C10	C11	166.3°	180.0°
C9	C8	C7	H7	4.7°	0.1°
C8	C9	H9	H9A	117.5°	120.0°
C8	C9	C10	H10	74.3°	60.0°
C8	C9	C10	H10A	46.9°	60.0°
C9	C10	C11	H10	119.4°	120.0°
C9	C10	C11	H10A	119.4°	120.0°
C10	C9	H9	H9A	117.5°	120.0°
C9	C10	H10	H10A	121.8°	120.0°
C9	C10	C11	H11	180.0°	60.0°
C9	C10	C11	H11A	60.0°	60.0°
C9	C10	C11	H11B	60.0°	180.0°
C2'	C1'	O5'	H1'	120.0°	119.9°
C1'	C2'	O2'	C3'	120.2°	119.7°
C1'	C2'	O2'	H2'	118.9°	120.1°
C1'	C2'	C3'	H2'	115.9°	119.9°
C1'	C2'	C3'	O3'	175.5°	176.8°
C1'	C2'	C3'	C4'	54.5°	56.9°
C2'	C1'	O5'	C5'	72.0°	61.1°
C1'	C2'	O2'	HO2'	180.0°	180.0°
C1'	C2'	C3'	H3'	63.3°	63.0°
O5'	C1'	C2'	O2'	168.1°	177.5°
O5'	C1'	C2'	C3'	66.9°	57.5°
C1'	O5'	C5'	C4'	62.1°	61.2°
C1'	O5'	C5'	C6'	176.3°	178.9°
O5'	C1'	C2'	H2'	48.5°	62.4°
C1'	O5'	C5'	H5'	59.5°	58.9°
C11	C10	C9	H9	45.5°	60.0°
C11	C10	C9	H9A	72.9°	60.0°
C11	C10	H10	H10A	121.8°	120.0°
C10	C11	H11	H11A	120.0°	120.0°
C10	C11	H11	H11B	120.0°	120.0°
C10	C11	H11A	H11B	120.0°	120.0°
O2'	C2'	C3'	H2'	121.8°	120.2°
O2'	C2'	C3'	O3'	62.1°	63.2°
O2'	C2'	C3'	C4'	176.8°	176.9°
O2'	C2'	C1'	H1'	71.7°	57.5°
O2'	C2'	C3'	H3'	59.0°	56.9°
C2'	C3'	O3'	C4'	121.0°	119.6°
C2'	C3'	O3'	H3'	119.6°	120.1°
C2'	C3'	C4'	H3'	117.6°	119.9°
C2'	C3'	C4'	O4'	171.1°	176.9°
C2'	C3'	C4'	C5'	48.9°	57.0°
C3'	C2'	C1'	H1'	53.3°	62.4°
C3'	C2'	O2'	HO2'	59.8°	60.3°
C2'	C3'	O3'	HO3'	180.0°	180.0°
C2'	C3'	C4'	H4'	70.1°	63.0°
O3'	C3'	C4'	H3'	120.7°	120.2°
O3'	C3'	C4'	O4'	67.2°	63.3°
O3'	C3'	C4'	C5'	170.5°	176.8°
O3'	C3'	C2'	H2'	59.7°	57.0°
O3'	C3'	C4'	H4'	51.6°	56.9°
C3'	C4'	O4'	C5'	122.3°	119.7°
C3'	C4'	O4'	H4'	118.0°	120.1°
C3'	C4'	C5'	H4'	119.4°	119.9°
C3'	C4'	C5'	O5'	54.3°	57.6°
C3'	C4'	C5'	C6'	167.7°	177.5°
C4'	C3'	C2'	H2'	61.4°	62.9°
C4'	C3'	O3'	HO3'	59.0°	60.4°
C3'	C4'	O4'	HO4'	180.0°	60.0°
C3'	C4'	C5'	H5'	68.9°	62.4°
O4'	C4'	C5'	H4'	120.9°	120.2°
O4'	C4'	C5'	O5'	174.1°	177.5°
O4'	C4'	C5'	C6'	72.6°	62.5°
O4'	C4'	C3'	H3'	53.5°	56.9°
O4'	C4'	C5'	H5'	50.9°	57.5°
C4'	C5'	O5'	C6'	121.6°	120.0°
C4'	C5'	O5'	H5'	121.7°	120.0°
C4'	C5'	C6'	H5'	122.9°	120.1°
C4'	C5'	C6'	O6'	39.6°	175.0°
C5'	C4'	C3'	H3'	68.8°	62.9°
C5'	C4'	O4'	HO4'	57.7°	179.6°
C4'	C5'	C6'	H6'	159.9°	55.1°
C4'	C5'	C6'	H6'A	80.8°	65.0°
O5'	C5'	C6'	H5'	118.0°	120.0°
O5'	C5'	C6'	O6'	79.5°	65.1°
C5'	O5'	C1'	H1'	48.0°	58.8°
O5'	C5'	C4'	H4'	65.1°	62.3°
O5'	C5'	C6'	H6'	40.9°	175.0°
O5'	C5'	C6'	H6'A	160.1°	54.9°
C5'	C6'	O6'	H6'	120.4°	119.9°
C5'	C6'	O6'	H6'A	120.3°	120.1°
C6'	C5'	C4'	H4'	48.3°	57.6°
C5'	C6'	H6'	H6'A	118.8°	120.1°
C5'	C6'	O6'	HO6'	180.0°	179.9°
O6'	C6'	C5'	H5'	162.5°	54.9°
O6'	C6'	H6'	H6'A	118.9°	120.0°
H9	C9	C10	H10	164.9°	180.0°
H9	C9	C10	H10A	73.9°	60.0°
H9A	C9	C10	H10	46.5°	60.0°
H9A	C9	C10	H10A	167.7°	NaN°
H1'	C1'	C2'	H2'	168.7°	177.7°
H10	C10	C11	H11	60.6°	180.0°
H10	C10	C11	H11A	179.4°	60.0°
H10	C10	C11	H11B	59.4°	60.0°
H10A	C10	C11	H11	60.6°	60.0°
H10A	C10	C11	H11A	59.4°	180.0°
H10A	C10	C11	H11B	179.4°	60.0°
H11	C11	H11A	H11B	120.0°	120.0°
H2'	C2'	O2'	HO2'	61.1°	59.9°
H2'	C2'	C3'	H3'	179.2°	177.1°
H3'	C3'	O3'	HO3'	60.4°	59.9°
H3'	C3'	C4'	H4'	172.3°	177.1°
H4'	C4'	O4'	HO4'	61.9°	60.2°
H4'	C4'	C5'	H5'	171.7°	177.7°
H5'	C5'	C6'	H6'	77.2°	65.0°
H5'	C5'	C6'	H6'A	42.1°	174.9°
H6'	C6'	O6'	HO6'	59.6°	60.0°
H6'A	C6'	O6'	HO6'	59.7°	60.0°

Definition date:	2012-04-12
Last modified:	2012-07-20
Release status:	REL
Processing site:	RCSB
Derived from:	4EL0