D1J
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| O4' | C4' | sing | 1.43Å | 1.44Å | |
| C3' | C4' | sing | 1.53Å | 1.54Å | |
| C3' | C2' | sing | 1.53Å | 1.58Å | |
| C4' | C5' | sing | 1.53Å | 1.58Å | |
| O2' | C2' | sing | 1.43Å | 1.45Å | |
| C2' | C1' | sing | 1.53Å | 1.58Å | |
| O6' | C6' | sing | 1.43Å | 1.45Å | |
| C5' | C6' | sing | 1.53Å | 1.57Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C1' | O5' | sing | 1.43Å | 1.42Å | |
| C1' | N1 | sing | 1.46Å | 1.49Å | |
| N1 | C6 | sing | 1.37Å | 1.43Å | |
| N1 | C2 | sing | 1.34Å | 1.44Å | |
| C6 | C5 | doub | 1.37Å | 1.41Å | |
| O2 | C2 | doub | 1.22Å | 1.25Å | |
| C2 | N3 | sing | 1.34Å | 1.44Å | |
| C5 | C7 | sing | 1.43Å | 1.32Å | |
| C5 | C4 | sing | 1.47Å | 1.42Å | |
| C7 | C8 | trip | 1.17Å | 1.33Å | |
| C8 | C9 | sing | 1.47Å | 1.39Å | |
| N3 | C4 | sing | 1.35Å | 1.42Å | |
| C4 | O4 | doub | 1.22Å | 1.23Å | |
| C9 | C10 | sing | 1.53Å | 1.39Å | |
| C10 | C11 | sing | 1.53Å | 1.40Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C9 | H19 | sing | 1.09Å | 1.10Å | |
| C9 | H29 | sing | 1.09Å | 1.10Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C10 | H110 | sing | 1.09Å | 1.10Å | |
| C10 | H210 | sing | 1.09Å | 1.10Å | |
| C11 | H111 | sing | 1.09Å | 1.10Å | |
| C11 | H211 | sing | 1.09Å | 1.10Å | |
| C11 | H311 | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | HO4' | sing | 0.97Å | 0.95Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C6' | H16' | sing | 1.09Å | 1.10Å | |
| C6' | H26' | sing | 1.09Å | 1.10Å | |
| O6' | HO6' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C4' | 111.2° | 109.5° |
| O3' | C3' | C2' | 114.8° | 109.6° |
| O3' | C3' | H3' | 107.9° | 109.6° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| O4' | C4' | C3' | 110.0° | 109.5° |
| O4' | C4' | C5' | 110.6° | 109.5° |
| O4' | C4' | H4' | 108.5° | 109.6° |
| C4' | O4' | HO4' | 109.5° | 114.0° |
| C4' | C3' | C2' | 109.9° | 109.1° |
| C3' | C4' | C5' | 113.6° | 109.1° |
| C4' | C3' | H3' | 106.5° | 109.5° |
| C3' | C4' | H4' | 107.2° | 109.5° |
| C3' | C2' | O2' | 114.5° | 109.6° |
| C3' | C2' | C1' | 108.7° | 109.2° |
| C3' | C2' | H2' | 107.2° | 109.5° |
| C2' | C3' | H3' | 106.0° | 109.6° |
| C4' | C5' | C6' | 113.6° | 109.5° |
| C4' | C5' | O5' | 109.4° | 109.4° |
| C5' | C4' | H4' | 106.7° | 109.5° |
| C4' | C5' | H5' | 109.6° | 109.5° |
| O2' | C2' | C1' | 110.1° | 109.5° |
| O2' | C2' | H2' | 108.8° | 109.5° |
| C2' | O2' | HO2' | 109.5° | 113.9° |
| C2' | C1' | O5' | 109.4° | 109.4° |
| C2' | C1' | N1 | 114.8° | 109.5° |
| C2' | C1' | H1' | 105.0° | 109.5° |
| C1' | C2' | H2' | 107.3° | 109.5° |
| O6' | C6' | C5' | 111.2° | 109.5° |
| O6' | C6' | H16' | 109.0° | 109.5° |
| O6' | C6' | H26' | 109.1° | 109.5° |
| C6' | O6' | HO6' | 109.5° | 114.0° |
| C6' | C5' | O5' | 102.4° | 109.5° |
| C6' | C5' | H5' | 109.8° | 109.5° |
| C5' | C6' | H16' | 109.0° | 109.5° |
| C5' | C6' | H26' | 109.0° | 109.5° |
| C5' | O5' | C1' | 108.6° | 114.1° |
| O5' | C5' | H5' | 111.9° | 109.5° |
| O5' | C1' | N1 | 114.2° | 109.5° |
| O5' | C1' | H1' | 106.7° | 109.5° |
| C1' | N1 | C6 | 120.8° | 119.3° |
| C1' | N1 | C2 | 119.1° | 119.3° |
| N1 | C1' | H1' | 105.9° | 109.4° |
| C6 | N1 | C2 | 120.0° | 121.4° |
| N1 | C6 | C5 | 120.7° | 119.4° |
| N1 | C6 | H6 | 119.7° | 120.3° |
| N1 | C2 | O2 | 121.4° | 119.1° |
| N1 | C2 | N3 | 118.3° | 121.9° |
| C6 | C5 | C7 | 118.2° | 120.8° |
| C6 | C5 | C4 | 119.8° | 118.3° |
| C5 | C6 | H6 | 119.6° | 120.3° |
| O2 | C2 | N3 | 120.2° | 119.0° |
| C2 | N3 | C4 | 120.5° | 120.3° |
| C2 | N3 | HN3 | 119.8° | 119.9° |
| C7 | C5 | C4 | 122.0° | 120.9° |
| C5 | C7 | C8 | 178.4° | 180.0° |
| C5 | C4 | N3 | 120.6° | 118.7° |
| C5 | C4 | O4 | 120.8° | 120.7° |
| C7 | C8 | C9 | 124.2° | 180.0° |
| C8 | C9 | C10 | 124.2° | 109.5° |
| C8 | C9 | H19 | 105.7° | 109.5° |
| C8 | C9 | H29 | 105.7° | 109.4° |
| N3 | C4 | O4 | 118.7° | 120.6° |
| C4 | N3 | HN3 | 119.7° | 119.8° |
| C9 | C10 | C11 | 118.4° | 109.5° |
| C10 | C9 | H19 | 105.7° | 109.5° |
| C10 | C9 | H29 | 105.7° | 109.5° |
| C9 | C10 | H110 | 107.2° | 109.5° |
| C9 | C10 | H210 | 107.2° | 109.5° |
| C11 | C10 | H110 | 107.2° | 109.5° |
| C11 | C10 | H210 | 107.2° | 109.5° |
| C10 | C11 | H111 | 109.5° | 109.5° |
| C10 | C11 | H211 | 109.5° | 109.5° |
| C10 | C11 | H311 | 109.5° | 109.4° |
| H19 | C9 | H29 | 109.5° | 109.5° |
| H110 | C10 | H210 | 109.5° | 109.5° |
| H111 | C11 | H211 | 109.5° | 109.5° |
| H111 | C11 | H311 | 109.4° | 109.5° |
| H211 | C11 | H311 | 109.5° | 109.5° |
| H16' | C6' | H26' | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C4' | O4' | 62.8° | 63.2° |
| O3' | C3' | C4' | C2' | 128.2° | 119.9° |
| O3' | C3' | C4' | H3' | 117.4° | 120.2° |
| O3' | C3' | C2' | H3' | 119.0° | 120.3° |
| O3' | C3' | C4' | C5' | 172.6° | 176.9° |
| O3' | C3' | C2' | O2' | 63.3° | 63.2° |
| O3' | C3' | C2' | C1' | 173.2° | 176.8° |
| O3' | C3' | C2' | H2' | 57.6° | 56.9° |
| O3' | C3' | C4' | H4' | 54.9° | 57.0° |
| O4' | C4' | C3' | C5' | 124.6° | 119.9° |
| O4' | C4' | C3' | H4' | 117.8° | 120.2° |
| O4' | C4' | C3' | C2' | 169.0° | 176.9° |
| O4' | C4' | C5' | H4' | 117.8° | 120.2° |
| O4' | C4' | C5' | C6' | 68.3° | 62.5° |
| O4' | C4' | C5' | O5' | 178.0° | 177.5° |
| O4' | C4' | C3' | H3' | 54.5° | 57.0° |
| O4' | C4' | C5' | H5' | 54.9° | 57.5° |
| C4' | C3' | C2' | H3' | 114.8° | 119.9° |
| C3' | C4' | C5' | H4' | 117.9° | 119.9° |
| C4' | C3' | C2' | O2' | 170.5° | 176.9° |
| C4' | C3' | C2' | C1' | 47.0° | 57.0° |
| C3' | C4' | C5' | C6' | 167.4° | 177.6° |
| C3' | C4' | C5' | O5' | 53.7° | 57.6° |
| C4' | C3' | C2' | H2' | 68.6° | 62.9° |
| C4' | C3' | O3' | HO3' | 180.0° | 60.0° |
| C3' | C4' | O4' | HO4' | 180.0° | 60.0° |
| C3' | C4' | C5' | H5' | 69.4° | 62.4° |
| C2' | C3' | C4' | C5' | 44.4° | 57.0° |
| C3' | C2' | O2' | C1' | 122.8° | 119.8° |
| C3' | C2' | O2' | H2' | 119.9° | 120.2° |
| C3' | C2' | C1' | H2' | 115.6° | 119.9° |
| C3' | C2' | C1' | O5' | 61.5° | 57.6° |
| C3' | C2' | C1' | N1 | 168.6° | 177.6° |
| C3' | C2' | C1' | H1' | 52.7° | 62.4° |
| C3' | C2' | O2' | HO2' | 180.0° | 60.3° |
| C2' | C3' | O3' | HO3' | 54.5° | 179.6° |
| C2' | C3' | C4' | H4' | 73.3° | 62.9° |
| C4' | C5' | C6' | O6' | 44.3° | 175.0° |
| C4' | C5' | C6' | O5' | 117.9° | 119.9° |
| C4' | C5' | C6' | H5' | 123.1° | 120.1° |
| C4' | C5' | O5' | H5' | 121.7° | 120.0° |
| C4' | C5' | O5' | C1' | 66.6° | 61.2° |
| C5' | C4' | C3' | H3' | 70.1° | 62.9° |
| C5' | C4' | O4' | HO4' | 53.7° | 179.7° |
| C4' | C5' | C6' | H16' | 76.0° | 55.0° |
| C4' | C5' | C6' | H26' | 164.5° | 64.9° |
| O2' | C2' | C1' | H2' | 118.3° | 120.1° |
| O2' | C2' | C1' | O5' | 172.4° | 177.6° |
| O2' | C2' | C1' | N1 | 42.5° | 62.4° |
| O2' | C2' | C1' | H1' | 73.4° | 57.6° |
| O2' | C2' | C3' | H3' | 55.8° | 57.0° |
| C2' | C1' | O5' | C5' | 72.4° | 61.1° |
| C2' | C1' | O5' | N1 | 130.3° | 120.0° |
| C2' | C1' | O5' | H1' | 113.1° | 120.0° |
| C2' | C1' | N1 | H1' | 115.4° | 120.0° |
| C2' | C1' | N1 | C6 | 55.9° | 115.1° |
| C2' | C1' | N1 | C2 | 121.6° | 64.7° |
| C1' | C2' | O2' | HO2' | 57.3° | 180.0° |
| C1' | C2' | C3' | H3' | 67.8° | 62.9° |
| O6' | C6' | C5' | H16' | 120.2° | 120.0° |
| O6' | C6' | C5' | H26' | 120.3° | 120.1° |
| O6' | C6' | C5' | O5' | 73.6° | 65.1° |
| O6' | C6' | C5' | H5' | 167.4° | 54.9° |
| O6' | C6' | H16' | H26' | 119.2° | 120.0° |
| C6' | C5' | O5' | H5' | 117.5° | 120.0° |
| C6' | C5' | O5' | C1' | 172.6° | 178.9° |
| C6' | C5' | C4' | H4' | 49.5° | 57.7° |
| C5' | C6' | H16' | H26' | 119.2° | 120.0° |
| C5' | C6' | O6' | HO6' | 180.0° | 180.0° |
| C5' | O5' | C1' | N1 | 157.3° | 178.8° |
| C5' | O5' | C1' | H1' | 40.6° | 58.9° |
| O5' | C5' | C4' | H4' | 64.2° | 62.3° |
| O5' | C5' | C6' | H16' | 166.2° | 174.9° |
| O5' | C5' | C6' | H26' | 46.7° | 55.0° |
| O5' | C1' | N1 | H1' | 117.1° | 120.0° |
| O5' | C1' | N1 | C6 | 71.6° | 125.0° |
| O5' | C1' | N1 | C2 | 110.9° | 55.3° |
| O5' | C1' | C2' | H2' | 54.1° | 62.3° |
| C1' | O5' | C5' | H5' | 55.1° | 58.9° |
| C1' | N1 | C6 | C2 | 177.5° | 179.8° |
| C1' | N1 | C6 | C5 | 179.7° | 179.7° |
| C1' | N1 | C2 | O2 | 2.1° | 0.2° |
| C1' | N1 | C2 | N3 | 178.6° | 179.7° |
| C1' | N1 | C6 | H6 | 0.4° | 0.2° |
| N1 | C1' | C2' | H2' | 75.8° | 57.7° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C2 | O2 | 179.6° | 180.0° |
| C6 | N1 | C2 | N3 | 1.0° | 0.0° |
| N1 | C6 | C5 | C7 | 177.5° | 180.0° |
| N1 | C6 | C5 | C4 | 1.8° | 0.0° |
| C6 | N1 | C1' | H1' | 171.3° | 5.0° |
| C2 | N1 | C6 | C5 | 2.2° | 0.0° |
| N1 | C2 | O2 | N3 | 179.4° | 179.9° |
| N1 | C2 | N3 | C4 | 0.4° | 0.0° |
| N1 | C2 | N3 | HN3 | 179.6° | 180.0° |
| C2 | N1 | C6 | H6 | 177.8° | 180.0° |
| C2 | N1 | C1' | H1' | 6.2° | 175.3° |
| C6 | C5 | C7 | C4 | 179.3° | 180.0° |
| C6 | C5 | C7 | C8 | 21.4° | 117.6° |
| C6 | C5 | C4 | N3 | 0.3° | 0.0° |
| C6 | C5 | C4 | O4 | 179.9° | 180.0° |
| O2 | C2 | N3 | C4 | 179.0° | 180.0° |
| O2 | C2 | N3 | HN3 | 1.0° | 0.1° |
| C2 | N3 | C4 | C5 | 0.7° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
| C2 | N3 | C4 | O4 | 179.0° | 180.0° |
| C5 | C7 | C8 | C9 | 178.4° | 9.7° |
| C7 | C5 | C4 | N3 | 178.9° | 180.0° |
| C7 | C5 | C4 | O4 | 0.8° | 0.0° |
| C7 | C5 | C6 | H6 | 2.5° | 0.0° |
| C4 | C5 | C7 | C8 | 159.3° | 62.4° |
| C5 | C4 | N3 | O4 | 179.7° | 180.0° |
| C5 | C4 | N3 | HN3 | 179.2° | 180.0° |
| C4 | C5 | C6 | H6 | 178.2° | 180.0° |
| C7 | C8 | C9 | C10 | 104.1° | 127.3° |
| C7 | C8 | C9 | H19 | 133.9° | 7.3° |
| C7 | C8 | C9 | H29 | 17.9° | 112.8° |
| C8 | C9 | C10 | H19 | 122.0° | 120.0° |
| C8 | C9 | C10 | H29 | 122.0° | 119.9° |
| C8 | C9 | C10 | C11 | 165.3° | 180.0° |
| C8 | C9 | H19 | H29 | 113.4° | 120.0° |
| C8 | C9 | C10 | H110 | 73.4° | 60.0° |
| C8 | C9 | C10 | H210 | 44.0° | 60.0° |
| O4 | C4 | N3 | HN3 | 1.0° | 0.0° |
| C9 | C10 | C11 | H110 | 121.3° | 120.0° |
| C9 | C10 | C11 | H210 | 121.3° | 120.0° |
| C10 | C9 | H19 | H29 | 113.4° | 120.0° |
| C9 | C10 | H110 | H210 | 116.0° | 120.0° |
| C9 | C10 | C11 | H111 | 180.0° | 60.0° |
| C9 | C10 | C11 | H211 | 60.0° | 60.0° |
| C9 | C10 | C11 | H311 | 60.0° | 180.0° |
| C11 | C10 | C9 | H19 | 43.3° | 60.0° |
| C11 | C10 | C9 | H29 | 72.7° | 60.0° |
| C11 | C10 | H110 | H210 | 116.0° | 120.0° |
| C10 | C11 | H111 | H211 | 120.0° | 120.0° |
| C10 | C11 | H111 | H311 | 120.0° | 120.0° |
| C10 | C11 | H211 | H311 | 120.0° | 120.0° |
| H19 | C9 | C10 | H110 | 164.6° | 180.0° |
| H19 | C9 | C10 | H210 | 77.9° | 60.0° |
| H29 | C9 | C10 | H110 | 48.6° | 59.9° |
| H29 | C9 | C10 | H210 | 166.0° | 180.0° |
| H1' | C1' | C2' | H2' | 168.3° | 177.7° |
| H110 | C10 | C11 | H111 | 58.7° | 180.0° |
| H110 | C10 | C11 | H211 | 178.8° | 60.0° |
| H110 | C10 | C11 | H311 | 61.2° | 60.1° |
| H210 | C10 | C11 | H111 | 58.7° | 60.0° |
| H210 | C10 | C11 | H211 | 61.3° | 180.0° |
| H210 | C10 | C11 | H311 | 178.7° | 60.0° |
| H111 | C11 | H211 | H311 | 120.0° | 120.0° |
| H2' | C2' | O2' | HO2' | 60.0° | 59.9° |
| H2' | C2' | C3' | H3' | 176.6° | 177.2° |
| H3' | C3' | O3' | HO3' | 63.5° | 60.2° |
| H3' | C3' | C4' | H4' | 172.3° | 177.2° |
| H4' | C4' | O4' | HO4' | 63.0° | 60.1° |
| H4' | C4' | C5' | H5' | 172.7° | 177.7° |
| H5' | C5' | C6' | H16' | 47.1° | 65.1° |
| H5' | C5' | C6' | H26' | 72.3° | 175.0° |
| H16' | C6' | O6' | HO6' | 59.7° | 60.0° |
| H26' | C6' | O6' | HO6' | 59.8° | 59.9° |
