D1F

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C2	sing	1.34Å	1.37Å
N1	C6	sing	1.36Å	1.44Å
N1	C1'	sing	1.46Å	1.51Å
C2	O2	doub	1.22Å	1.24Å
C2	N3	sing	1.34Å	1.42Å
N3	C4	sing	1.35Å	1.40Å
C4	O4	doub	1.22Å	1.24Å
C4	C5	sing	1.47Å	1.37Å
C5	C6	doub	1.37Å	1.41Å
C5	C7	sing	1.43Å	1.50Å
C7	C8	trip	1.17Å	1.15Å
C8	C9	sing	1.47Å	1.52Å
C9	C10	sing	1.53Å	1.55Å
C1'	C2'	sing	1.53Å	1.55Å
C1'	O5'	sing	1.43Å	1.45Å
C10	C11	sing	1.53Å	1.54Å
C11	C12	sing	1.53Å	1.54Å
C12	C13	sing	1.53Å	1.53Å
C2'	O2'	sing	1.43Å	1.46Å
C2'	C3'	sing	1.53Å	1.60Å
C3'	O3'	sing	1.43Å	1.45Å
C3'	C4'	sing	1.53Å	1.55Å
C4'	O4'	sing	1.43Å	1.47Å
C4'	C5'	sing	1.53Å	1.58Å
C5'	O5'	sing	1.43Å	1.44Å
C5'	C6'	sing	1.53Å	1.53Å
C6'	O6'	sing	1.43Å	1.43Å
N3	HN3	sing	0.97Å	1.00Å
C6	H6	sing	1.08Å	1.08Å
C9	H9	sing	1.09Å	1.10Å
C9	H9A	sing	1.09Å	1.10Å
C1'	H1'	sing	1.09Å	1.10Å
C10	H10	sing	1.09Å	1.10Å
C10	H10A	sing	1.09Å	1.10Å
C11	H11	sing	1.09Å	1.10Å
C11	H11A	sing	1.09Å	1.10Å
C12	H12	sing	1.09Å	1.10Å
C12	H12A	sing	1.09Å	1.10Å
C13	H13	sing	1.09Å	1.10Å
C13	H13A	sing	1.09Å	1.10Å
C13	H13B	sing	1.09Å	1.10Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO2'	sing	0.97Å	0.95Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	HO4'	sing	0.97Å	0.95Å
C5'	H5'	sing	1.09Å	1.10Å
C6'	H6'	sing	1.09Å	1.10Å
C6'	H6'A	sing	1.09Å	1.10Å
O6'	HO6'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	N1	C6	120.3°	121.4°
C2	N1	C1'	115.1°	119.3°
N1	C2	O2	121.0°	119.0°
N1	C2	N3	121.1°	121.9°
C6	N1	C1'	124.5°	119.3°
N1	C6	C5	116.7°	119.4°
N1	C6	H6	121.6°	120.4°
N1	C1'	C2'	117.5°	109.5°
N1	C1'	O5'	111.9°	109.5°
N1	C1'	H1'	105.7°	109.5°
O2	C2	N3	117.9°	119.1°
C2	N3	C4	119.3°	120.4°
C2	N3	HN3	120.3°	119.8°
N3	C4	O4	123.3°	120.7°
N3	C4	C5	119.3°	118.7°
C4	N3	HN3	120.4°	119.8°
O4	C4	C5	117.4°	120.6°
C4	C5	C6	123.2°	118.2°
C4	C5	C7	105.5°	120.9°
C6	C5	C7	131.3°	120.9°
C5	C6	H6	121.6°	120.2°
C5	C7	C8	177.6°	180.0°
C7	C8	C9	175.4°	179.9°
C8	C9	C10	112.4°	109.5°
C8	C9	H9	108.8°	109.5°
C8	C9	H9A	108.8°	109.5°
C9	C10	C11	116.0°	109.5°
C10	C9	H9	108.7°	109.5°
C10	C9	H9A	108.7°	109.5°
C9	C10	H10	107.8°	109.5°
C9	C10	H10A	107.8°	109.5°
C2'	C1'	O5'	109.1°	109.4°
C1'	C2'	O2'	109.9°	109.5°
C1'	C2'	C3'	107.4°	109.2°
C2'	C1'	H1'	105.3°	109.4°
C1'	C2'	H2'	107.7°	109.6°
C1'	O5'	C5'	112.0°	114.2°
O5'	C1'	H1'	106.4°	109.5°
C10	C11	C12	117.5°	109.5°
C11	C10	H10	107.8°	109.4°
C11	C10	H10A	107.8°	109.5°
C10	C11	H11	107.4°	109.5°
C10	C11	H11A	107.4°	109.5°
C11	C12	C13	112.3°	109.4°
C12	C11	H11	107.4°	109.5°
C12	C11	H11A	107.4°	109.4°
C11	C12	H12	108.8°	109.5°
C11	C12	H12A	108.8°	109.4°
C13	C12	H12	108.8°	109.5°
C13	C12	H12A	108.7°	109.5°
C12	C13	H13	109.5°	109.5°
C12	C13	H13A	109.4°	109.5°
C12	C13	H13B	109.5°	109.4°
O2'	C2'	C3'	115.8°	109.5°
O2'	C2'	H2'	108.8°	109.6°
C2'	O2'	HO2'	109.5°	114.0°
C2'	C3'	O3'	114.6°	109.5°
C2'	C3'	C4'	109.5°	109.1°
C3'	C2'	H2'	107.1°	109.6°
C2'	C3'	H3'	107.2°	109.6°
O3'	C3'	C4'	108.7°	109.5°
O3'	C3'	H3'	109.0°	109.5°
C3'	O3'	HO3'	109.5°	114.0°
C3'	C4'	O4'	111.0°	109.6°
C3'	C4'	C5'	112.1°	109.1°
C4'	C3'	H3'	107.7°	109.6°
C3'	C4'	H4'	106.7°	109.5°
O4'	C4'	C5'	112.7°	109.5°
O4'	C4'	H4'	107.6°	109.6°
C4'	O4'	HO4'	109.5°	114.0°
C4'	C5'	O5'	111.9°	109.4°
C4'	C5'	C6'	111.6°	109.5°
C5'	C4'	H4'	106.4°	109.5°
C4'	C5'	H5'	108.0°	109.5°
O5'	C5'	C6'	107.0°	109.5°
O5'	C5'	H5'	109.7°	109.5°
C5'	C6'	O6'	110.4°	109.5°
C6'	C5'	H5'	108.6°	109.5°
C5'	C6'	H6'	109.2°	109.5°
C5'	C6'	H6'A	109.2°	109.5°
O6'	C6'	H6'	109.3°	109.5°
O6'	C6'	H6'A	109.3°	109.4°
C6'	O6'	HO6'	109.5°	114.0°
H9	C9	H9A	109.5°	109.4°
H10	C10	H10A	109.5°	109.5°
H11	C11	H11A	109.4°	109.5°
H12	C12	H12A	109.5°	109.5°
H13	C13	H13A	109.5°	109.5°
H13	C13	H13B	109.4°	109.5°
H13A	C13	H13B	109.5°	109.4°
H6'	C6'	H6'A	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	N1	C6	C1'	178.5°	179.8°
N1	C2	O2	N3	178.4°	179.9°
N1	C2	N3	C4	0.8°	0.1°
C2	N1	C6	C5	0.6°	0.0°
C2	N1	C1'	C2'	135.3°	65.0°
C2	N1	C1'	O5'	97.3°	54.9°
N1	C2	N3	HN3	179.2°	180.0°
C2	N1	C6	H6	179.4°	180.0°
C2	N1	C1'	H1'	18.2°	175.0°
C6	N1	C2	O2	179.4°	180.0°
C6	N1	C2	N3	1.1°	0.1°
N1	C6	C5	C4	0.3°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	C7	179.9°	180.0°
C6	N1	C1'	C2'	46.2°	114.8°
C6	N1	C1'	O5'	81.3°	125.3°
C6	N1	C1'	H1'	163.3°	5.2°
C1'	N1	C2	O2	2.0°	0.2°
C1'	N1	C2	N3	179.7°	179.7°
C1'	N1	C6	C5	179.0°	179.7°
N1	C1'	C2'	O5'	128.8°	120.0°
N1	C1'	C2'	H1'	117.3°	120.1°
N1	C1'	O5'	H1'	115.0°	120.1°
N1	C1'	C2'	O2'	40.2°	62.5°
N1	C1'	C2'	C3'	166.9°	177.6°
N1	C1'	O5'	C5'	161.2°	178.9°
C1'	N1	C6	H6	1.0°	0.2°
N1	C1'	C2'	H2'	78.1°	57.6°
O2	C2	N3	C4	179.1°	179.9°
O2	C2	N3	HN3	0.9°	0.1°
C2	N3	C4	HN3	180.0°	179.9°
C2	N3	C4	O4	179.5°	179.9°
C2	N3	C4	C5	0.0°	0.0°
N3	C4	O4	C5	179.5°	180.0°
N3	C4	C5	C6	0.5°	0.0°
N3	C4	C5	C7	179.6°	180.0°
O4	C4	C5	C6	179.9°	180.0°
O4	C4	C5	C7	0.0°	0.0°
O4	C4	N3	HN3	0.4°	0.0°
C4	C5	C6	C7	179.9°	180.0°
C4	C5	C7	C8	130.1°	19.1°
C5	C4	N3	HN3	180.0°	180.0°
C4	C5	C6	H6	179.7°	180.0°
C6	C5	C7	C8	50.0°	160.8°
C5	C7	C8	C9	149.3°	173.9°
C7	C5	C6	H6	0.1°	0.0°
C7	C8	C9	C10	141.7°	25.3°
C7	C8	C9	H9	97.9°	94.7°
C7	C8	C9	H9A	21.3°	145.3°
C8	C9	C10	H9	120.4°	120.1°
C8	C9	C10	H9A	120.4°	120.0°
C8	C9	C10	C11	177.6°	180.0°
C8	C9	H9	H9A	118.7°	120.0°
C8	C9	C10	H10	61.4°	60.0°
C8	C9	C10	H10A	56.7°	60.0°
C9	C10	C11	H10	121.0°	120.0°
C9	C10	C11	H10A	120.9°	120.0°
C9	C10	C11	C12	178.8°	180.0°
C10	C9	H9	H9A	118.6°	120.0°
C9	C10	H10	H10A	117.0°	120.1°
C9	C10	C11	H11	57.6°	60.0°
C9	C10	C11	H11A	60.0°	60.0°
C2'	C1'	O5'	H1'	113.2°	119.9°
C1'	C2'	O2'	C3'	121.8°	119.6°
C1'	C2'	O2'	H2'	117.6°	120.2°
C1'	C2'	C3'	H2'	115.4°	120.0°
C1'	C2'	C3'	O3'	178.1°	176.9°
C1'	C2'	C3'	C4'	55.7°	57.0°
C2'	C1'	O5'	C5'	67.0°	61.2°
C1'	C2'	O2'	HO2'	180.0°	180.0°
C1'	C2'	C3'	H3'	60.9°	62.9°
O5'	C1'	C2'	O2'	169.0°	177.5°
O5'	C1'	C2'	C3'	64.3°	57.6°
C1'	O5'	C5'	C4'	58.1°	61.2°
C1'	O5'	C5'	C6'	179.3°	178.8°
O5'	C1'	C2'	H2'	50.7°	62.4°
C1'	O5'	C5'	H5'	61.7°	58.8°
C10	C11	C12	H11	121.2°	120.0°
C10	C11	C12	H11A	121.2°	120.0°
C10	C11	C12	C13	120.5°	180.0°
C11	C10	C9	H9	57.2°	60.0°
C11	C10	C9	H9A	61.9°	60.0°
C11	C10	H10	H10A	117.0°	119.9°
C10	C11	H11	H11A	116.3°	120.1°
C10	C11	C12	H12	119.1°	60.0°
C10	C11	C12	H12A	0.1°	60.0°
C11	C12	C13	H12	120.4°	120.0°
C11	C12	C13	H12A	120.4°	119.9°
C12	C11	C10	H10	60.3°	60.0°
C12	C11	C10	H10A	57.8°	60.0°
C12	C11	H11	H11A	116.3°	119.9°
C11	C12	H12	H12A	118.7°	120.0°
C11	C12	C13	H13	180.0°	60.0°
C11	C12	C13	H13A	60.0°	60.0°
C11	C12	C13	H13B	60.0°	180.0°
C13	C12	C11	H11	0.6°	60.0°
C13	C12	C11	H11A	118.3°	60.0°
C13	C12	H12	H12A	118.7°	120.0°
C12	C13	H13	H13A	120.0°	120.1°
C12	C13	H13	H13B	120.0°	120.0°
C12	C13	H13A	H13B	120.0°	120.0°
O2'	C2'	C3'	H2'	121.5°	120.2°
O2'	C2'	C3'	O3'	58.8°	63.3°
O2'	C2'	C3'	C4'	178.8°	176.9°
O2'	C2'	C1'	H1'	77.1°	57.5°
O2'	C2'	C3'	H3'	62.2°	56.9°
C2'	C3'	O3'	C4'	122.9°	119.6°
C2'	C3'	O3'	H3'	120.0°	120.2°
C2'	C3'	C4'	H3'	116.2°	120.0°
C2'	C3'	C4'	O4'	175.5°	176.9°
C2'	C3'	C4'	C5'	48.6°	57.0°
C3'	C2'	C1'	H1'	49.6°	62.3°
C3'	C2'	O2'	HO2'	58.2°	60.4°
C2'	C3'	O3'	HO3'	180.0°	179.9°
C2'	C3'	C4'	H4'	67.5°	62.9°
O3'	C3'	C4'	H3'	117.9°	120.2°
O3'	C3'	C4'	O4'	58.6°	63.3°
O3'	C3'	C4'	C5'	174.4°	176.9°
O3'	C3'	C2'	H2'	62.7°	56.9°
O3'	C3'	C4'	H4'	58.3°	57.0°
C3'	C4'	O4'	C5'	126.6°	119.7°
C3'	C4'	O4'	H4'	116.4°	120.2°
C3'	C4'	C5'	H4'	116.3°	119.9°
C3'	C4'	C5'	O5'	49.3°	57.6°
C3'	C4'	C5'	C6'	169.2°	177.6°
C4'	C3'	C2'	H2'	59.7°	62.9°
C4'	C3'	O3'	HO3'	57.1°	60.4°
C3'	C4'	O4'	HO4'	180.0°	60.0°
C3'	C4'	C5'	H5'	71.6°	62.4°
O4'	C4'	C5'	H4'	117.7°	120.2°
O4'	C4'	C5'	O5'	175.4°	177.5°
O4'	C4'	C5'	C6'	64.8°	62.5°
O4'	C4'	C3'	H3'	59.3°	56.9°
O4'	C4'	C5'	H5'	54.5°	57.5°
C4'	C5'	O5'	C6'	122.6°	120.0°
C4'	C5'	O5'	H5'	119.8°	119.9°
C4'	C5'	C6'	H5'	118.9°	120.0°
C4'	C5'	C6'	O6'	46.9°	175.0°
C5'	C4'	C3'	H3'	67.7°	63.0°
C5'	C4'	O4'	HO4'	53.4°	179.7°
C4'	C5'	C6'	H6'	167.1°	55.0°
C4'	C5'	C6'	H6'A	73.2°	65.0°
O5'	C5'	C6'	H5'	118.4°	120.0°
O5'	C5'	C6'	O6'	75.8°	65.0°
C5'	O5'	C1'	H1'	46.2°	58.7°
O5'	C5'	C4'	H4'	66.9°	62.4°
O5'	C5'	C6'	H6'	44.3°	174.9°
O5'	C5'	C6'	H6'A	164.0°	55.0°
C5'	C6'	O6'	H6'	120.2°	120.0°
C5'	C6'	O6'	H6'A	120.1°	120.0°
C6'	C5'	C4'	H4'	52.9°	57.7°
C5'	C6'	H6'	H6'A	119.5°	120.0°
C5'	C6'	O6'	HO6'	180.0°	180.0°
O6'	C6'	C5'	H5'	165.8°	55.0°
O6'	C6'	H6'	H6'A	119.6°	120.0°
H9	C9	C10	H10	178.1°	179.9°
H9	C9	C10	H10A	63.8°	60.0°
H9A	C9	C10	H10	59.0°	60.0°
H9A	C9	C10	H10A	177.1°	180.0°
H1'	C1'	C2'	H2'	164.6°	177.7°
H10	C10	C11	H11	178.6°	180.0°
H10	C10	C11	H11A	60.9°	60.0°
H10A	C10	C11	H11	63.3°	60.0°
H10A	C10	C11	H11A	179.0°	180.0°
H11	C11	C12	H12	119.8°	180.0°
H11	C11	C12	H12A	121.0°	60.0°
H11A	C11	C12	H12	2.1°	60.0°
H11A	C11	C12	H12A	121.3°	180.0°
H12	C12	C13	H13	59.6°	180.0°
H12	C12	C13	H13A	179.6°	60.0°
H12	C12	C13	H13B	60.4°	60.0°
H12A	C12	C13	H13	59.6°	60.0°
H12A	C12	C13	H13A	60.4°	180.0°
H12A	C12	C13	H13B	179.6°	60.0°
H13	C13	H13A	H13B	120.0°	120.0°
H2'	C2'	O2'	HO2'	62.4°	59.8°
H2'	C2'	C3'	H3'	176.3°	177.1°
H3'	C3'	O3'	HO3'	60.0°	59.9°
H3'	C3'	C4'	H4'	176.3°	177.1°
H4'	C4'	O4'	HO4'	63.6°	60.2°
H4'	C4'	C5'	H5'	172.2°	177.7°
H5'	C5'	C6'	H6'	74.0°	65.1°
H5'	C5'	C6'	H6'A	45.6°	175.0°
H6'	C6'	O6'	HO6'	59.9°	60.0°
H6'A	C6'	O6'	HO6'	59.9°	60.0°

Definition date:	2012-04-10
Last modified:	2012-07-20
Release status:	REL
Processing site:	RCSB
Derived from:	4EJ2