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SummaryGeometryRelated PDB entries

D11

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
NCAsing1.47Å1.48Å
NHsing1.01Å1.00Å
NH2sing1.01Å1.00Å
CACBsing1.53Å1.49Å
CACsing1.51Å1.53Å
CAHAsing1.09Å1.10Å
CBCG2sing1.53Å1.53Å
CBOG1sing1.43Å1.39Å
CBHBsing1.09Å1.10Å
CG2HG21sing1.09Å1.10Å
CG2HG22sing1.09Å1.10Å
CG2HG23sing1.09Å1.10Å
OG1Psing1.61Å1.60Å
PO1Pdoub1.48Å1.64Å
PO2Psing1.61Å1.62Å
PO3Psing1.61Å1.62Å
O2PHO2Psing0.97Å0.95Å
O3PHO3Psing0.97Å0.95Å
COdoub1.21Å1.37Å
COXTsing1.34Å1.30Å
OXTHXTsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CANH109.5°111.0°
CANH2109.5°111.0°
NCACB121.8°109.5°
NCAC108.3°109.5°
NCAHA101.6°109.6°
HNH2109.4°111.0°
CBCAC110.3°109.5°
CBCAHA99.1°109.4°
CACBCG2118.1°109.5°
CACBOG1109.2°109.5°
CACBHB101.8°109.4°
CCAHA115.4°109.5°
CACO107.7°120.0°
CACOXT129.9°120.0°
CG2CBOG1102.7°109.5°
CG2CBHB108.4°109.4°
CBCG2HG21109.5°109.5°
CBCG2HG22109.5°109.5°
CBCG2HG23109.5°109.4°
OG1CBHB117.4°109.5°
CBOG1P127.3°123.0°
HG21CG2HG22109.4°109.5°
HG21CG2HG23109.5°109.4°
HG22CG2HG23109.5°109.5°
OG1PO1P109.6°109.5°
OG1PO2P109.6°109.5°
OG1PO3P98.2°109.5°
O1PPO2P107.6°109.5°
O1PPO3P112.2°109.4°
O2PPO3P119.1°109.5°
PO2PHO2P109.5°114.0°
PO3PHO3P109.5°114.0°
OCOXT122.4°120.0°
COXTHXT109.5°117.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CANHH2120.0°124.0°
NCACBC128.6°120.0°
NCACBHA109.9°120.1°
NCACHA113.1°120.1°
NCACBCG2172.4°60.1°
NCACBOG155.7°60.0°
NCACBHB69.1°180.0°
NCACO61.8°20.0°
NCACOXT115.1°160.0°
HNCACB70.7°64.0°
HNCAC58.8°176.0°
HNCAHA179.3°56.0°
H2NCACB169.3°59.9°
H2NCAC61.2°60.0°
H2NCAHA60.7°179.9°
CBCACHA111.3°119.9°
CACBCG2OG1120.1°120.0°
CACBCG2HB115.0°120.0°
CACBOG1HB115.1°120.0°
CACBCG2HG2168.5°60.0°
CACBCG2HG2251.5°180.0°
CACBCG2HG23171.5°60.0°
CACBOG1P102.7°120.0°
CBCACO73.9°100.0°
CBCACOXT109.2°80.0°
CCACBCG259.0°180.0°
CCACBOG1175.7°60.0°
CCACBHB59.5°60.0°
CACOOXT177.2°180.0°
CACOXTHXT176.5°180.0°
HACACBCG262.5°60.0°
HACACBOG154.2°180.0°
HACACBHB179.0°59.9°
HACACO174.9°140.1°
HACACOXT2.1°39.9°
CG2CBOG1HB118.7°120.0°
CBCG2HG21HG22120.0°120.1°
CBCG2HG21HG23120.0°120.0°
CBCG2HG22HG23120.0°120.0°
CG2CBOG1P131.1°120.0°
OG1CBCG2HG2151.6°180.0°
OG1CBCG2HG22171.6°60.0°
OG1CBCG2HG2368.4°60.0°
CBOG1PO1P67.3°55.0°
CBOG1PO2P50.6°65.0°
CBOG1PO3P175.5°175.0°
HBCBCG2HG21176.5°60.0°
HBCBCG2HG2263.5°60.1°
HBCBCG2HG2356.5°179.9°
HBCBOG1P12.4°0.0°
HG21CG2HG22HG23120.0°120.0°
OG1PO1PO2P119.1°120.0°
OG1PO1PO3P108.0°120.0°
OG1PO2PO3P111.8°120.0°
OG1PO2PHO2P55.6°60.0°
OG1PO3PHO3P120.8°180.0°
O1PPO2PO3P129.0°120.0°
O1PPO2PHO2P63.6°180.0°
O1PPO3PHO3P124.1°60.1°
O2PPO3PHO3P2.8°59.9°
O3PPO2PHO2P167.4°60.0°
OCOXTHXT0.0°0.0°

248636

PDB entries from 2026-02-04

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