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Summary Geometry Related PDB entries

D0M

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N1	C1	sing	1.47Å	1.44Å
N1	H1	sing	1.01Å	1.00Å
C1	C2	sing	1.53Å	1.52Å
C1	C4	sing	1.53Å	1.52Å
C1	H2	sing	1.09Å	1.10Å
C2	C3	sing	1.53Å	1.56Å
C2	H3	sing	1.09Å	1.10Å
C2	H4	sing	1.09Å	1.10Å
C3	H5	sing	1.09Å	1.10Å
C3	H6	sing	1.09Å	1.10Å
C3	H7	sing	1.09Å	1.10Å
C4	C5	sing	1.53Å	1.55Å
C4	H8	sing	1.09Å	1.10Å
C4	H9	sing	1.09Å	1.10Å
C5	H10	sing	1.09Å	1.10Å
C5	H11	sing	1.09Å	1.10Å
C5	H12	sing	1.09Å	1.10Å
N1	H13	sing	1.01Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	N1	H1	109.5°	111.0°
N1	C1	C2	109.4°	109.5°
N1	C1	C4	109.8°	109.5°
N1	C1	H2	108.4°	109.5°
C1	N1	H13	109.4°	111.0°
H1	N1	H13	109.4°	111.0°
C2	C1	C4	106.4°	109.5°
C2	C1	H2	111.7°	109.5°
C1	C2	C3	114.9°	109.5°
C1	C2	H3	107.7°	109.5°
C1	C2	H4	107.7°	109.4°
C4	C1	H2	111.2°	109.5°
C1	C4	C5	116.4°	109.5°
C1	C4	H8	107.2°	109.5°
C1	C4	H9	107.2°	109.5°
C3	C2	H3	107.7°	109.5°
C3	C2	H4	107.7°	109.4°
C2	C3	H5	109.5°	109.5°
C2	C3	H6	109.4°	109.4°
C2	C3	H7	109.5°	109.5°
H3	C2	H4	111.2°	109.5°
H5	C3	H6	109.5°	109.5°
H5	C3	H7	109.4°	109.5°
H6	C3	H7	109.5°	109.5°
C5	C4	H8	107.2°	109.4°
C5	C4	H9	107.3°	109.4°
C4	C5	H10	109.5°	109.4°
C4	C5	H11	109.5°	109.4°
C4	C5	H12	109.5°	109.5°
H8	C4	H9	111.6°	109.4°
H10	C5	H11	109.4°	109.4°
H10	C5	H12	109.5°	109.5°
H11	C5	H12	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C1	N1	H1	H13	120.0°	123.9°
N1	C1	C2	C4	118.6°	120.0°
N1	C1	C2	H2	119.9°	120.0°
N1	C1	C4	H2	119.9°	120.0°
N1	C1	C2	C3	42.2°	65.0°
N1	C1	C2	H3	77.7°	55.0°
N1	C1	C2	H4	162.2°	175.0°
N1	C1	C4	C5	63.0°	65.0°
N1	C1	C4	H8	177.1°	175.0°
N1	C1	C4	H9	57.0°	55.0°
H1	N1	C1	C2	180.0°	60.0°
H1	N1	C1	C4	63.5°	60.0°
H1	N1	C1	H2	58.1°	180.0°
C2	C1	C4	H2	121.8°	120.0°
C1	C2	C3	H3	120.0°	120.1°
C1	C2	C3	H4	120.0°	119.9°
C1	C2	H3	H4	117.8°	120.0°
C1	C2	C3	H5	180.0°	60.0°
C1	C2	C3	H6	60.0°	60.0°
C1	C2	C3	H7	60.0°	180.0°
C2	C1	C4	C5	178.8°	175.0°
C2	C1	C4	H8	58.8°	55.0°
C2	C1	C4	H9	61.2°	65.0°
C2	C1	N1	H13	60.0°	64.0°
C4	C1	C2	C3	160.8°	175.0°
C4	C1	C2	H3	40.8°	65.0°
C4	C1	C2	H4	79.2°	55.1°
C1	C4	C5	H8	120.0°	120.0°
C1	C4	C5	H9	120.0°	120.0°
C1	C4	H8	H9	117.2°	120.0°
C1	C4	C5	H10	180.0°	60.0°
C1	C4	C5	H11	60.0°	60.0°
C1	C4	C5	H12	60.0°	180.0°
C4	C1	N1	H13	56.4°	176.1°
H2	C1	C2	C3	77.7°	55.0°
H2	C1	C2	H3	162.3°	175.0°
H2	C1	C2	H4	42.3°	65.0°
H2	C1	C4	C5	56.9°	55.0°
H2	C1	C4	H8	63.0°	65.0°
H2	C1	C4	H9	177.0°	175.0°
H2	C1	N1	H13	178.0°	56.1°
C3	C2	H3	H4	117.8°	119.9°
C2	C3	H5	H6	120.0°	120.0°
C2	C3	H5	H7	120.0°	120.0°
C2	C3	H6	H7	120.0°	120.0°
H3	C2	C3	H5	60.0°	179.9°
H3	C2	C3	H6	180.0°	60.1°
H3	C2	C3	H7	60.0°	59.9°
H4	C2	C3	H5	60.0°	59.9°
H4	C2	C3	H6	60.0°	180.0°
H4	C2	C3	H7	180.0°	60.1°
H5	C3	H6	H7	120.0°	120.0°
C5	C4	H8	H9	117.2°	119.9°
C4	C5	H10	H11	120.0°	119.9°
C4	C5	H10	H12	120.0°	120.1°
C4	C5	H11	H12	120.0°	120.1°
H8	C4	C5	H10	60.0°	180.0°
H8	C4	C5	H11	180.0°	60.1°
H8	C4	C5	H12	60.0°	60.0°
H9	C4	C5	H10	60.0°	60.1°
H9	C4	C5	H11	60.0°	180.0°
H9	C4	C5	H12	180.0°	60.0°
H10	C5	H11	H12	120.0°	120.0°

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