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SummaryGeometryRelated PDB entries

D09

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C'6C'1doub1.40Å1.41ÅAromatic
C'1C11sing1.47Å1.40Å
C'1C'2sing1.40Å1.42ÅAromatic
C'2C'3doub1.38Å1.40ÅAromatic
C'2O13sing1.36Å1.39Å
C'4C'3sing1.38Å1.41ÅAromatic
C'3H'3sing1.08Å1.08Å
C'5C'4doub1.38Å1.41ÅAromatic
C'4H'4sing1.08Å1.08Å
C'6C'5sing1.38Å1.42ÅAromatic
C'5H'5sing1.08Å1.08Å
C'6H'6sing1.08Å1.08Å
C8'N1'doub1.33Å1.36ÅAromatic
N1'C2'sing1.32Å1.34ÅAromatic
C10C11sing1.51Å1.54Å
C10H10sing1.09Å1.10Å
C10H10Asing1.09Å1.10Å
C10H10Bsing1.09Å1.10Å
C11C9'doub1.34Å1.52Å
O13C13sing1.43Å1.48Å
C13H13sing1.09Å1.10Å
C13H13Asing1.09Å1.10Å
C13H13Bsing1.09Å1.10Å
C2'N2'sing1.38Å1.30Å
C2'N3'doub1.33Å1.35ÅAromatic
N2'HN2'sing0.97Å1.00Å
N2'HN2Asing0.97Å1.00Å
C4'N3'sing1.33Å1.36ÅAromatic
C5'C4'doub1.40Å1.41ÅAromatic
C4'N4'sing1.38Å1.34Å
N4'HN4'sing0.97Å1.00Å
N4'HN4Asing0.97Å1.00Å
C8'C5'sing1.40Å1.41ÅAromatic
C6'C5'sing1.47Å1.40ÅAromatic
C7'C6'doub1.36Å1.35ÅAromatic
C6'C9'sing1.47Å1.53Å
O8'C7'sing1.34Å1.39ÅAromatic
C7'H7'sing1.08Å1.08Å
O8'C8'sing1.34Å1.40ÅAromatic
C9'H9'sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C'6C'1C11121.6°120.2°
C'6C'1C'2120.5°119.6°
C'1C'6C'5120.2°119.9°
C'1C'6H'6119.9°120.0°
C11C'1C'2117.9°120.2°
C'1C11C10118.7°120.0°
C'1C11C9'117.9°120.0°
C'1C'2C'3119.4°119.7°
C'1C'2O13119.0°120.1°
C'3C'2O13121.6°120.1°
C'2C'3C'4119.8°120.1°
C'2C'3H'3120.1°119.9°
C'2O13C13126.5°117.0°
C'4C'3H'3120.1°120.0°
C'3C'4C'5121.6°120.4°
C'3C'4H'4119.2°119.8°
C'5C'4H'4119.2°119.8°
C'4C'5C'6118.6°120.3°
C'4C'5H'5120.7°119.9°
C'6C'5H'5120.7°119.9°
C'5C'6H'6119.9°120.1°
C8'N1'C2'121.6°120.7°
N1'C8'C5'118.7°118.5°
N1'C8'O8'133.6°133.9°
N1'C2'N2'120.4°118.7°
N1'C2'N3'121.0°122.5°
C11C10H10109.5°109.5°
C11C10H10A109.5°109.5°
C11C10H10B109.5°109.5°
C10C11C9'123.3°120.0°
H10C10H10A109.4°109.4°
H10C10H10B109.4°109.5°
H10AC10H10B109.5°109.4°
C11C9'C6'121.6°120.0°
C11C9'H9'119.2°120.0°
O13C13H13109.5°109.5°
O13C13H13A109.4°109.5°
O13C13H13B109.5°109.5°
H13C13H13A109.5°109.5°
H13C13H13B109.5°109.5°
H13AC13H13B109.5°109.4°
N2'C2'N3'118.6°118.8°
C2'N2'HN2'109.5°120.0°
C2'N2'HN2A109.4°120.0°
C2'N3'C4'121.0°120.8°
HN2'N2'HN2A109.5°120.0°
N3'C4'C5'119.3°118.4°
N3'C4'N4'117.7°120.8°
C5'C4'N4'123.1°120.8°
C4'C5'C8'118.6°119.1°
C4'C5'C6'134.0°135.3°
C4'N4'HN4'109.5°120.0°
C4'N4'HN4A109.4°120.0°
HN4'N4'HN4A109.5°120.0°
C8'C5'C6'107.5°105.7°
C5'C8'O8'107.8°107.6°
C5'C6'C7'107.8°105.7°
C5'C6'C9'121.1°127.1°
C7'C6'C9'131.0°127.1°
C6'C7'O8'110.7°109.7°
C6'C7'H7'124.6°125.1°
C6'C9'H9'119.2°120.0°
O8'C7'H7'124.6°125.2°
C7'O8'C8'106.2°111.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C'6C'1C11C'2178.4°179.7°
C'6C'1C'2C'32.1°0.3°
C'6C'1C'2O13179.2°179.8°
C'1C'6C'5C'40.3°0.6°
C'1C'6C'5H'6180.0°179.6°
C'1C'6C'5H'5179.7°179.7°
C'6C'1C11C1092.4°105.2°
C'6C'1C11C9'91.9°74.7°
C11C'1C'2C'3179.5°180.0°
C11C'1C'2O132.4°0.1°
C11C'1C'6C'5179.8°179.7°
C11C'1C'6H'60.2°0.1°
C'1C11C10C9'175.5°179.9°
C'1C11C10H10180.0°94.2°
C'1C11C10H10A60.0°145.8°
C'1C11C10H10B60.0°25.8°
C'1C11C9'C6'172.3°173.4°
C'1C11C9'H9'7.7°6.7°
C'1C'2C'3O13177.0°179.9°
C'1C'2C'3C'41.6°0.0°
C'1C'2C'3H'3178.4°179.9°
C'2C'1C'6C'51.4°0.6°
C'2C'1C'6H'6178.6°179.8°
C'2C'1C11C1086.0°75.1°
C'2C'1C11C9'89.7°105.0°
C'1C'2O13C13117.4°180.0°
C'2C'3C'4H'3180.0°180.0°
C'2C'3C'4C'50.5°0.0°
C'2C'3C'4H'4179.5°180.0°
C'3C'2O13C1365.5°0.1°
O13C'2C'3C'4178.7°179.9°
O13C'2C'3H'31.3°0.0°
C'2O13C13H13180.0°60.0°
C'2O13C13H13A60.0°179.9°
C'2O13C13H13B60.0°60.0°
C'3C'4C'5H'4180.0°180.0°
C'3C'4C'5C'60.1°0.3°
C'3C'4C'5H'5179.9°180.0°
H'3C'3C'4C'5179.5°180.0°
H'3C'3C'4H'40.5°0.0°
C'4C'5C'6H'5180.0°179.7°
C'4C'5C'6H'6179.7°179.8°
H'4C'4C'5C'6179.9°179.7°
H'4C'4C'5H'50.1°0.0°
H'5C'5C'6H'60.3°0.1°
C8'N1'C2'N2'178.3°180.0°
C8'N1'C2'N3'0.4°0.1°
N1'C8'C5'C4'0.7°0.0°
N1'C8'C5'O8'180.0°179.9°
N1'C8'C5'C6'179.4°180.0°
N1'C8'O8'C7'179.7°180.0°
N1'C2'N2'N3'177.9°179.9°
N1'C2'N2'HN2'0.0°0.1°
N1'C2'N2'HN2A120.0°180.0°
N1'C2'N3'C4'1.4°0.1°
C2'N1'C8'C5'0.6°0.0°
C2'N1'C8'O8'179.4°179.9°
C11C10H10H10A120.0°120.0°
C11C10H10H10B120.0°120.1°
C11C10H10AH10B120.0°120.0°
C10C11C9'C6'12.2°6.6°
C10C11C9'H9'167.8°173.4°
H10C10H10AH10B119.9°120.0°
H10C10C11C9'4.5°85.7°
H10AC10C11C9'115.5°34.3°
H10BC10C11C9'124.5°154.3°
C11C9'C6'C5'168.2°161.7°
C11C9'C6'C7'9.1°18.2°
C11C9'C6'H9'180.0°180.0°
O13C13H13H13A120.0°120.1°
O13C13H13H13B120.0°120.0°
O13C13H13AH13B120.0°120.0°
H13C13H13AH13B120.0°120.0°
C2'N2'HN2'HN2A120.0°179.9°
N2'C2'N3'C4'179.3°180.0°
N3'C2'N2'HN2'178.0°180.0°
N3'C2'N2'HN2A57.9°0.1°
C2'N3'C4'C5'1.2°0.0°
C2'N3'C4'N4'178.3°180.0°
N3'C4'C5'N4'179.5°180.0°
N3'C4'N4'HN4'0.0°0.0°
N3'C4'N4'HN4A120.0°180.0°
N3'C4'C5'C8'0.2°0.0°
N3'C4'C5'C6'179.7°180.0°
C5'C4'N4'HN4'179.5°180.0°
C5'C4'N4'HN4A60.5°0.1°
C4'C5'C8'C6'179.9°180.0°
C4'C5'C6'C7'178.5°180.0°
C4'C5'C6'C9'0.7°0.1°
C4'C5'C8'O8'179.3°180.0°
C4'N4'HN4'HN4A120.0°180.0°
N4'C4'C5'C8'179.3°179.9°
N4'C4'C5'C6'0.8°0.0°
C8'C5'C6'C7'1.3°0.1°
C8'C5'C6'C9'179.1°180.0°
C5'C8'O8'C7'0.3°0.0°
C5'C6'C7'C9'177.5°179.9°
C5'C6'C7'O8'1.6°0.0°
C5'C6'C7'H7'178.4°180.0°
C6'C5'C8'O8'0.6°0.1°
C5'C6'C9'H9'11.8°18.3°
C6'C7'O8'H7'180.0°179.9°
C6'C7'O8'C8'1.2°0.0°
C7'C6'C9'H9'170.9°161.8°
C9'C6'C7'O8'179.1°179.9°
C9'C6'C7'H7'0.9°0.1°
H7'C7'O8'C8'178.8°179.9°

223532

PDB entries from 2024-08-07

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