CZU
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1G | PG | doub | 1.48Å | 1.63Å | |
| O3G | PG | sing | 1.61Å | 1.49Å | |
| PG | O3B | sing | 1.61Å | 1.71Å | |
| PG | O2G | sing | 1.61Å | 1.65Å | |
| O3B | PB | sing | 1.61Å | 1.71Å | |
| O1B | PB | doub | 1.48Å | 1.63Å | |
| PB | O2B | sing | 1.61Å | 1.49Å | |
| PB | O3A | sing | 1.61Å | 1.67Å | |
| O2' | C2' | sing | 1.43Å | 1.44Å | |
| O3A | PA | sing | 1.61Å | 1.63Å | |
| O1A | PA | doub | 1.48Å | 1.65Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C2' | sing | 1.54Å | 1.51Å | |
| C3' | C4' | sing | 1.54Å | 1.55Å | |
| C2' | C1' | sing | 1.54Å | 1.50Å | |
| PA | O5' | sing | 1.61Å | 1.60Å | |
| PA | O2A | sing | 1.61Å | 1.46Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C1' | N9 | sing | 1.47Å | 1.47Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| N9 | C8 | sing | 1.36Å | 1.33Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.34Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.33Å | Aromatic |
| C4 | N3 | sing | 1.34Å | 1.34Å | |
| C4 | C5 | doub | 1.40Å | 1.34Å | Aromatic |
| N3 | C2 | doub | 1.30Å | 1.40Å | |
| N7 | C5 | sing | 1.35Å | 1.33Å | Aromatic |
| C5 | C6 | sing | 1.42Å | 1.33Å | |
| C2 | N1 | sing | 1.36Å | 1.32Å | |
| C6 | N1 | sing | 1.35Å | 1.40Å | |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| C2 | H1 | sing | 1.08Å | 1.08Å | |
| C1' | H2 | sing | 1.09Å | 1.10Å | |
| C2' | H3 | sing | 1.09Å | 1.10Å | |
| C3' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C5' | H7 | sing | 1.09Å | 1.10Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| O2' | H10 | sing | 0.97Å | 0.95Å | |
| O2A | H11 | sing | 0.97Å | 0.95Å | |
| O2B | H12 | sing | 0.97Å | 0.95Å | |
| O2G | H13 | sing | 0.97Å | 0.95Å | |
| O3' | H14 | sing | 0.97Å | 0.95Å | |
| O3G | H15 | sing | 0.97Å | 0.95Å | |
| N1 | H16 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1G | PG | O3G | 110.1° | 109.5° |
| O1G | PG | O3B | 106.8° | 109.5° |
| O1G | PG | O2G | 102.0° | 109.5° |
| O3G | PG | O3B | 111.9° | 109.5° |
| O3G | PG | O2G | 113.2° | 109.5° |
| PG | O3G | H15 | 109.5° | 114.0° |
| O3B | PG | O2G | 112.1° | 109.4° |
| PG | O3B | PB | 131.1° | 134.0° |
| PG | O2G | H13 | 109.5° | 114.0° |
| O3B | PB | O1B | 106.8° | 109.5° |
| O3B | PB | O2B | 114.8° | 109.4° |
| O3B | PB | O3A | 106.4° | 109.5° |
| O1B | PB | O2B | 109.9° | 109.5° |
| O1B | PB | O3A | 105.8° | 109.5° |
| O2B | PB | O3A | 112.6° | 109.5° |
| PB | O2B | H12 | 109.5° | 114.0° |
| PB | O3A | PA | 118.5° | 134.0° |
| O2' | C2' | C3' | 111.3° | 110.6° |
| O2' | C2' | C1' | 112.4° | 110.5° |
| O2' | C2' | H3 | 111.7° | 110.4° |
| C2' | O2' | H10 | 109.5° | 114.0° |
| O3A | PA | O1A | 99.1° | 109.5° |
| O3A | PA | O5' | 106.9° | 109.5° |
| O3A | PA | O2A | 117.9° | 109.5° |
| O1A | PA | O5' | 109.5° | 109.5° |
| O1A | PA | O2A | 111.5° | 109.4° |
| O3' | C3' | C2' | 107.3° | 110.5° |
| O3' | C3' | C4' | 110.0° | 110.5° |
| O3' | C3' | H4 | 114.1° | 110.5° |
| C3' | O3' | H14 | 109.5° | 114.0° |
| C2' | C3' | C4' | 99.7° | 104.0° |
| C3' | C2' | C1' | 99.3° | 104.1° |
| C3' | C2' | H3 | 110.7° | 110.5° |
| C2' | C3' | H4 | 112.6° | 110.5° |
| C3' | C4' | C5' | 116.2° | 110.4° |
| C3' | C4' | O4' | 103.7° | 104.8° |
| C4' | C3' | H4 | 112.1° | 110.5° |
| C3' | C4' | H5 | 111.3° | 110.4° |
| C2' | C1' | N9 | 112.4° | 110.3° |
| C2' | C1' | O4' | 95.8° | 104.8° |
| C2' | C1' | H2 | 113.8° | 110.5° |
| C1' | C2' | H3 | 110.9° | 110.5° |
| O5' | PA | O2A | 111.2° | 109.5° |
| PA | O5' | C5' | 122.3° | 123.0° |
| PA | O2A | H11 | 109.5° | 114.0° |
| O5' | C5' | C4' | 111.9° | 109.5° |
| O5' | C5' | H6 | 108.9° | 109.5° |
| O5' | C5' | H7 | 108.8° | 109.5° |
| N9 | C1' | O4' | 103.2° | 110.4° |
| C1' | N9 | C8 | 117.7° | 126.2° |
| C1' | N9 | C4 | 134.5° | 126.3° |
| N9 | C1' | H2 | 114.4° | 110.4° |
| C1' | O4' | C4' | 106.2° | 105.3° |
| O4' | C1' | H2 | 115.4° | 110.4° |
| C5' | C4' | O4' | 100.6° | 110.4° |
| C5' | C4' | H5 | 111.4° | 110.3° |
| C4' | C5' | H6 | 108.8° | 109.5° |
| C4' | C5' | H7 | 108.9° | 109.5° |
| O4' | C4' | H5 | 112.9° | 110.5° |
| C8 | N9 | C4 | 107.8° | 107.5° |
| N9 | C8 | N7 | 108.7° | 109.8° |
| N9 | C8 | H8 | 125.6° | 125.1° |
| N9 | C4 | N3 | 132.5° | 134.3° |
| N9 | C4 | C5 | 107.7° | 106.1° |
| C8 | N7 | C5 | 107.7° | 109.3° |
| N7 | C8 | H8 | 125.7° | 125.1° |
| N3 | C4 | C5 | 119.9° | 119.6° |
| C4 | N3 | C2 | 119.6° | 121.2° |
| C4 | C5 | N7 | 108.2° | 107.3° |
| C4 | C5 | C6 | 121.5° | 118.4° |
| N3 | C2 | N1 | 120.0° | 122.2° |
| N3 | C2 | H1 | 120.0° | 119.0° |
| N7 | C5 | C6 | 130.3° | 134.3° |
| C5 | C6 | N1 | 119.8° | 118.2° |
| C5 | C6 | O6 | 120.4° | 120.9° |
| C2 | N1 | C6 | 119.2° | 120.4° |
| N1 | C2 | H1 | 120.0° | 118.9° |
| C2 | N1 | H16 | 120.4° | 119.8° |
| N1 | C6 | O6 | 119.9° | 120.9° |
| C6 | N1 | H16 | 120.4° | 119.8° |
| H6 | C5' | H7 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1G | PG | O3G | O3B | 118.7° | 120.0° |
| O1G | PG | O3G | O2G | 113.4° | 120.0° |
| O1G | PG | O3B | O2G | 110.9° | 120.0° |
| O1G | PG | O3B | PB | 100.0° | 39.9° |
| O1G | PG | O2G | H13 | 0.0° | 180.0° |
| O1G | PG | O3G | H15 | 0.0° | 60.0° |
| O3G | PG | O3B | O2G | 128.5° | 120.0° |
| O3G | PG | O3B | PB | 139.3° | 159.9° |
| O3G | PG | O2G | H13 | 118.3° | 60.0° |
| PG | O3B | PB | O1B | 145.2° | 44.9° |
| PG | O3B | PB | O2B | 23.1° | 75.1° |
| PG | O3B | PB | O3A | 102.2° | 165.0° |
| O3B | PG | O2G | H13 | 113.9° | 60.0° |
| O3B | PG | O3G | H15 | 118.7° | 180.0° |
| O2G | PG | O3B | PB | 10.9° | 80.1° |
| O2G | PG | O3G | H15 | 113.4° | 60.0° |
| O3B | PB | O1B | O2B | 125.1° | 119.9° |
| O3B | PB | O1B | O3A | 113.1° | 120.1° |
| O3B | PB | O2B | O3A | 122.0° | 120.0° |
| O3B | PB | O3A | PA | 167.5° | 160.0° |
| O3B | PB | O2B | H12 | 120.4° | 60.0° |
| O1B | PB | O2B | O3A | 117.6° | 120.0° |
| O1B | PB | O3A | PA | 54.1° | 40.0° |
| O1B | PB | O2B | H12 | 0.0° | 180.0° |
| O2B | PB | O3A | PA | 65.9° | 80.0° |
| PB | O3A | PA | O1A | 3.4° | 45.0° |
| PB | O3A | PA | O5' | 110.3° | 165.0° |
| PB | O3A | PA | O2A | 123.7° | 75.0° |
| O3A | PB | O2B | H12 | 117.6° | 60.0° |
| O2' | C2' | C3' | O3' | 45.4° | 0.1° |
| O2' | C2' | C3' | C1' | 118.5° | 118.7° |
| O2' | C2' | C3' | H3 | 124.9° | 122.6° |
| O2' | C2' | C3' | C4' | 160.1° | 118.7° |
| O2' | C2' | C1' | H3 | 125.8° | 122.6° |
| O2' | C2' | C1' | N9 | 77.9° | 98.4° |
| O2' | C2' | C1' | O4' | 175.2° | 142.8° |
| O2' | C2' | C1' | H2 | 54.1° | 23.9° |
| O2' | C2' | C3' | H4 | 81.0° | 122.6° |
| O3A | PA | O1A | O5' | 111.7° | 120.0° |
| O3A | PA | O1A | O2A | 124.9° | 120.0° |
| O3A | PA | O5' | O2A | 129.9° | 120.0° |
| O3A | PA | O5' | C5' | 149.8° | 175.0° |
| O3A | PA | O2A | H11 | 113.6° | 60.0° |
| O1A | PA | O5' | O2A | 123.6° | 120.0° |
| O1A | PA | O5' | C5' | 103.7° | 55.0° |
| O1A | PA | O2A | H11 | 0.0° | 180.0° |
| O3' | C3' | C2' | C4' | 114.6° | 118.7° |
| O3' | C3' | C2' | H4 | 126.4° | 122.7° |
| O3' | C3' | C4' | H4 | 128.1° | 122.7° |
| O3' | C3' | C2' | C1' | 73.1° | 118.7° |
| O3' | C3' | C4' | C5' | 149.1° | 98.5° |
| O3' | C3' | C4' | O4' | 101.5° | 142.7° |
| O3' | C3' | C2' | H3 | 170.3° | 122.7° |
| O3' | C3' | C4' | H5 | 20.2° | 23.7° |
| C2' | C3' | C4' | H4 | 119.3° | 118.6° |
| C3' | C2' | C1' | H3 | 116.5° | 118.7° |
| C3' | C2' | C1' | N9 | 164.4° | 142.8° |
| C3' | C2' | C1' | O4' | 57.5° | 24.0° |
| C2' | C3' | C4' | C5' | 98.3° | 142.8° |
| C2' | C3' | C4' | O4' | 11.1° | 24.0° |
| C3' | C2' | C1' | H2 | 63.6° | 94.9° |
| C2' | C3' | C4' | H5 | 132.8° | 95.0° |
| C3' | C2' | O2' | H10 | 180.0° | 65.3° |
| C2' | C3' | O3' | H14 | 180.0° | 61.4° |
| C4' | C3' | C2' | C1' | 41.5° | 0.0° |
| C3' | C4' | C5' | O5' | 7.5° | 175.0° |
| C3' | C4' | O4' | C1' | 26.0° | 40.5° |
| C3' | C4' | C5' | O4' | 111.2° | 115.4° |
| C3' | C4' | C5' | H5 | 128.9° | 122.2° |
| C3' | C4' | O4' | H5 | 120.6° | 118.9° |
| C4' | C3' | C2' | H3 | 75.1° | 118.6° |
| C3' | C4' | C5' | H6 | 112.8° | 55.0° |
| C3' | C4' | C5' | H7 | 127.9° | 65.0° |
| C4' | C3' | O3' | H14 | 72.4° | 176.1° |
| C2' | C1' | N9 | O4' | 102.0° | 115.3° |
| C2' | C1' | N9 | H2 | 131.8° | 122.4° |
| C2' | C1' | O4' | H2 | 119.8° | 118.9° |
| C2' | C1' | O4' | C4' | 52.0° | 40.5° |
| C2' | C1' | N9 | C8 | 58.5° | 91.8° |
| C2' | C1' | N9 | C4 | 122.2° | 88.3° |
| C1' | C2' | C3' | H4 | 160.5° | 118.7° |
| C1' | C2' | O2' | H10 | 69.6° | 180.0° |
| PA | O5' | C5' | C4' | 120.9° | 180.0° |
| PA | O5' | C5' | H6 | 118.7° | 60.0° |
| PA | O5' | C5' | H7 | 0.5° | 60.0° |
| O5' | PA | O2A | H11 | 122.5° | 60.0° |
| O2A | PA | O5' | C5' | 19.9° | 65.0° |
| O5' | C5' | C4' | H6 | 120.4° | 120.0° |
| O5' | C5' | C4' | H7 | 120.4° | 120.0° |
| O5' | C5' | C4' | O4' | 103.6° | 69.6° |
| O5' | C5' | C4' | H5 | 136.4° | 52.8° |
| O5' | C5' | H6 | H7 | 118.9° | 120.0° |
| N9 | C1' | O4' | H2 | 125.5° | 122.3° |
| N9 | C1' | O4' | C4' | 166.7° | 159.3° |
| C1' | N9 | C8 | C4 | 179.5° | 179.9° |
| C1' | N9 | C8 | N7 | 179.7° | 180.0° |
| C1' | N9 | C4 | N3 | 0.5° | 0.1° |
| C1' | N9 | C4 | C5 | 179.7° | 180.0° |
| N9 | C1' | C2' | H3 | 47.9° | 24.2° |
| C1' | N9 | C8 | H8 | 0.3° | 0.1° |
| C1' | O4' | C4' | C5' | 146.6° | 159.4° |
| O4' | C1' | N9 | C8 | 43.6° | 23.5° |
| O4' | C1' | N9 | C4 | 135.7° | 156.4° |
| O4' | C1' | C2' | H3 | 58.9° | 94.7° |
| C1' | O4' | C4' | H5 | 94.6° | 78.4° |
| C5' | C4' | O4' | H5 | 118.8° | 122.3° |
| C5' | C4' | C3' | H4 | 21.1° | 24.2° |
| C4' | C5' | H6 | H7 | 118.9° | 120.0° |
| C4' | O4' | C1' | H2 | 67.8° | 78.4° |
| O4' | C4' | C3' | H4 | 130.4° | 94.6° |
| O4' | C4' | C5' | H6 | 136.0° | 170.4° |
| O4' | C4' | C5' | H7 | 16.7° | 50.4° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| C8 | N9 | C4 | N3 | 179.8° | 180.0° |
| C8 | N9 | C4 | C5 | 0.4° | 0.0° |
| N9 | C8 | N7 | C5 | 0.0° | 0.0° |
| C8 | N9 | C1' | H2 | 169.8° | 145.8° |
| C4 | N9 | C8 | N7 | 0.2° | 0.0° |
| N9 | C4 | N3 | C5 | 179.8° | 179.9° |
| N9 | C4 | N3 | C2 | 179.7° | 179.9° |
| N9 | C4 | C5 | N7 | 0.4° | 0.1° |
| N9 | C4 | C5 | C6 | 179.6° | 179.7° |
| C4 | N9 | C1' | H2 | 9.5° | 34.1° |
| C4 | N9 | C8 | H8 | 179.8° | 180.0° |
| C8 | N7 | C5 | C4 | 0.2° | 0.0° |
| C8 | N7 | C5 | C6 | 179.7° | 179.7° |
| N3 | C4 | C5 | N7 | 179.8° | 180.0° |
| N3 | C4 | C5 | C6 | 0.3° | 0.2° |
| C4 | N3 | C2 | N1 | 0.0° | 0.0° |
| C4 | N3 | C2 | H1 | 180.0° | 179.7° |
| C5 | C4 | N3 | C2 | 0.1° | 0.0° |
| C4 | C5 | N7 | C6 | 179.9° | 179.7° |
| C4 | C5 | C6 | N1 | 0.4° | 0.5° |
| C4 | C5 | C6 | O6 | 179.8° | 180.0° |
| N3 | C2 | N1 | H1 | 180.0° | 179.7° |
| N3 | C2 | N1 | C6 | 0.1° | 0.3° |
| N3 | C2 | N1 | H16 | 179.9° | 179.7° |
| N7 | C5 | C6 | N1 | 179.7° | 179.8° |
| N7 | C5 | C6 | O6 | 0.1° | 0.3° |
| C5 | N7 | C8 | H8 | 180.0° | 180.0° |
| C5 | C6 | N1 | C2 | 0.3° | 0.5° |
| C5 | C6 | N1 | O6 | 179.8° | 179.5° |
| C5 | C6 | N1 | H16 | 179.7° | 179.5° |
| C2 | N1 | C6 | H16 | 180.0° | 180.0° |
| C2 | N1 | C6 | O6 | 179.9° | 180.0° |
| C6 | N1 | C2 | H1 | 179.9° | 180.0° |
| O6 | C6 | N1 | H16 | 0.1° | 0.0° |
| H1 | C2 | N1 | H16 | 0.1° | 0.0° |
| H2 | C1' | C2' | H3 | 180.0° | 146.5° |
| H3 | C2' | C3' | H4 | 43.9° | 0.0° |
| H3 | C2' | O2' | H10 | 55.8° | 57.4° |
| H4 | C3' | C4' | H5 | 107.9° | 146.4° |
| H4 | C3' | O3' | H14 | 54.5° | 61.2° |
| H5 | C4' | C5' | H6 | 16.0° | 67.2° |
| H5 | C4' | C5' | H7 | 103.2° | 172.8° |
