Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.45Å | |
| N | HN1 | sing | 1.01Å | 1.02Å | |
| N | HN2 | sing | 1.01Å | 1.02Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | C | sing | 1.51Å | 1.54Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| CB | SG | sing | 1.81Å | 1.79Å | |
| CB | HB1 | sing | 1.09Å | 1.11Å | |
| CB | HB2 | sing | 1.09Å | 1.12Å | |
| SG | CD | sing | 1.81Å | 1.80Å | |
| CD | HD1 | sing | 1.09Å | 1.11Å | |
| CD | HD2 | sing | 1.09Å | 1.11Å | |
| CD | HD3 | sing | 1.09Å | 1.12Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | HN1 | 110.7° | 106.7° |
| CA | N | HN2 | 111.8° | 106.7° |
| N | CA | CB | 110.7° | 109.4° |
| N | CA | C | 109.3° | 109.5° |
| N | CA | HA | 109.4° | 109.5° |
| HN1 | N | HN2 | 111.7° | 106.8° |
| CB | CA | C | 111.3° | 109.5° |
| CB | CA | HA | 107.3° | 109.4° |
| CA | CB | SG | 115.6° | 109.5° |
| CA | CB | HB1 | 110.0° | 109.4° |
| CA | CB | HB2 | 110.0° | 109.4° |
| C | CA | HA | 108.8° | 109.5° |
| CA | C | O | 120.6° | 120.0° |
| CA | C | OXT | 117.2° | 120.0° |
| SG | CB | HB1 | 110.0° | 109.5° |
| SG | CB | HB2 | 110.0° | 109.5° |
| CB | SG | CD | 99.6° | 100.0° |
| HB1 | CB | HB2 | 100.2° | 109.4° |
| SG | CD | HD1 | 99.6° | 109.4° |
| SG | CD | HD2 | 116.0° | 109.4° |
| SG | CD | HD3 | 116.0° | 109.4° |
| HD1 | CD | HD2 | 116.1° | 109.5° |
| HD1 | CD | HD3 | 116.0° | 109.5° |
| HD2 | CD | HD3 | 94.4° | 109.5° |
| O | C | OXT | 122.2° | 119.9° |
| C | OXT | HXT | 117.2° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | HN1 | HN2 | 125.2° | 113.8° |
| N | CA | CB | C | 121.8° | 120.0° |
| N | CA | CB | HA | 119.3° | 119.9° |
| N | CA | C | HA | 119.4° | 120.0° |
| N | CA | CB | SG | 50.8° | 59.9° |
| N | CA | CB | HB1 | 176.1° | 180.0° |
| N | CA | CB | HB2 | 74.5° | 60.1° |
| N | CA | C | O | 161.2° | 30.0° |
| N | CA | C | OXT | 17.2° | 150.1° |
| HN1 | N | CA | CB | 179.9° | 53.8° |
| HN1 | N | CA | C | 57.1° | 173.8° |
| HN1 | N | CA | HA | 61.9° | 66.1° |
| HN2 | N | CA | CB | 54.8° | 60.1° |
| HN2 | N | CA | C | 177.7° | 60.0° |
| HN2 | N | CA | HA | 63.3° | 180.0° |
| CB | CA | C | HA | 118.0° | 120.0° |
| CA | CB | SG | HB1 | 125.3° | 120.0° |
| CA | CB | SG | HB2 | 125.2° | 120.0° |
| CA | CB | HB1 | HB2 | 115.8° | 119.9° |
| CA | CB | SG | CD | 155.7° | 180.0° |
| CB | CA | C | O | 76.2° | 90.0° |
| CB | CA | C | OXT | 105.4° | 89.9° |
| C | CA | CB | SG | 71.0° | 180.0° |
| C | CA | CB | HB1 | 54.3° | 59.9° |
| C | CA | CB | HB2 | 163.7° | 60.0° |
| CA | C | O | OXT | 178.3° | 179.9° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| HA | CA | CB | SG | 170.0° | 60.0° |
| HA | CA | CB | HB1 | 64.6° | 60.1° |
| HA | CA | CB | HB2 | 44.8° | 180.0° |
| HA | CA | C | O | 41.8° | 150.0° |
| HA | CA | C | OXT | 136.6° | 30.1° |
| SG | CB | HB1 | HB2 | 115.8° | 120.0° |
| CB | SG | CD | HD1 | 180.0° | 180.0° |
| CB | SG | CD | HD2 | 54.7° | 60.0° |
| CB | SG | CD | HD3 | 54.7° | 60.0° |
| HB1 | CB | SG | CD | 30.4° | 60.0° |
| HB2 | CB | SG | CD | 79.0° | 60.0° |
| SG | CD | HD1 | HD2 | 125.3° | 120.0° |
| SG | CD | HD1 | HD3 | 125.2° | 120.0° |
| SG | CD | HD2 | HD3 | 121.8° | 120.0° |
| HD1 | CD | HD2 | HD3 | 121.8° | 120.1° |
| O | C | OXT | HXT | 1.6° | 0.1° |
