CY3
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.50Å | |
| N | H | sing | 1.01Å | 0.99Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | CB | sing | 1.53Å | 1.55Å | |
| CA | HA | sing | 1.09Å | 1.08Å | |
| C | O | doub | 1.21Å | 1.22Å | |
| C | N1 | sing | 1.35Å | 1.29Å | |
| CB | SG | sing | 1.81Å | 1.81Å | |
| CB | HB2 | sing | 1.09Å | 1.08Å | |
| CB | HB3 | sing | 1.09Å | 1.08Å | |
| SG | HG | sing | 1.34Å | 0.95Å | |
| N1 | HN11 | sing | 0.97Å | 0.98Å | |
| N1 | HN12 | sing | 0.97Å | 0.98Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 120.9° | 106.7° |
| CA | N | H2 | 112.6° | 106.7° |
| N | CA | C | 108.3° | 109.4° |
| N | CA | CB | 110.3° | 109.5° |
| N | CA | HA | 109.1° | 109.4° |
| H | N | H2 | 36.0° | 106.6° |
| C | CA | CB | 109.4° | 109.5° |
| C | CA | HA | 108.9° | 109.5° |
| CA | C | O | 122.5° | 120.0° |
| CA | C | N1 | 118.3° | 120.0° |
| CB | CA | HA | 110.7° | 109.5° |
| CA | CB | SG | 117.7° | 109.5° |
| CA | CB | HB2 | 107.7° | 109.5° |
| CA | CB | HB3 | 108.4° | 109.5° |
| O | C | N1 | 119.2° | 120.0° |
| C | N1 | HN11 | 120.1° | 120.0° |
| C | N1 | HN12 | 121.2° | 120.0° |
| SG | CB | HB2 | 107.1° | 109.4° |
| SG | CB | HB3 | 108.5° | 109.4° |
| CB | SG | HG | 117.7° | 100.0° |
| HB2 | CB | HB3 | 107.0° | 109.5° |
| HN11 | N1 | HN12 | 118.8° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 86.4° | 113.8° |
| N | CA | C | CB | 120.3° | 120.0° |
| N | CA | C | HA | 118.5° | 119.9° |
| N | CA | CB | HA | 120.8° | 120.0° |
| N | CA | C | O | 19.3° | 30.0° |
| N | CA | C | N1 | 160.1° | 150.0° |
| N | CA | CB | SG | 83.5° | 60.0° |
| N | CA | CB | HB2 | 155.4° | 60.0° |
| N | CA | CB | HB3 | 40.0° | 180.0° |
| H | N | CA | C | 94.2° | 173.8° |
| H | N | CA | CB | 25.6° | 53.8° |
| H | N | CA | HA | 147.4° | 66.2° |
| H2 | N | CA | C | 54.7° | 60.1° |
| H2 | N | CA | CB | 65.0° | 59.9° |
| H2 | N | CA | HA | 173.2° | 179.9° |
| C | CA | CB | HA | 120.1° | 120.1° |
| CA | C | O | N1 | 179.5° | 180.0° |
| C | CA | CB | SG | 157.4° | 180.0° |
| C | CA | CB | HB2 | 36.4° | 60.0° |
| C | CA | CB | HB3 | 79.0° | 60.0° |
| CA | C | N1 | HN11 | 0.3° | 180.0° |
| CA | C | N1 | HN12 | 179.5° | 0.0° |
| CB | CA | C | O | 100.9° | 90.0° |
| CB | CA | C | N1 | 79.6° | 90.0° |
| CA | CB | SG | HB2 | 121.3° | 120.0° |
| CA | CB | SG | HB3 | 123.5° | 120.1° |
| CA | CB | HB2 | HB3 | 116.4° | 120.1° |
| CA | CB | SG | HG | 180.0° | 180.0° |
| HA | CA | C | O | 137.8° | 149.9° |
| HA | CA | C | N1 | 41.6° | 30.0° |
| HA | CA | CB | SG | 37.3° | 60.0° |
| HA | CA | CB | HB2 | 83.7° | 179.9° |
| HA | CA | CB | HB3 | 160.8° | 60.0° |
| O | C | N1 | HN11 | 179.7° | 0.0° |
| O | C | N1 | HN12 | 0.0° | 180.0° |
| C | N1 | HN11 | HN12 | 179.7° | 180.0° |
| SG | CB | HB2 | HB3 | 116.2° | 119.9° |
| HB2 | CB | SG | HG | 58.7° | 60.0° |
| HB3 | CB | SG | HG | 56.5° | 60.0° |
