CY1
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.45Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | HA | sing | 1.09Å | 1.11Å | |
| CB | SG | sing | 1.81Å | 1.89Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CB | HB3 | sing | 1.09Å | 1.11Å | |
| SG | CD | sing | 1.81Å | 1.78Å | |
| CD | NE | sing | 1.47Å | 1.47Å | |
| CD | HD2 | sing | 1.09Å | 1.11Å | |
| CD | HD3 | sing | 1.09Å | 1.11Å | |
| NE | CZ | sing | 1.35Å | 1.33Å | |
| NE | HE | sing | 0.97Å | 1.02Å | |
| CZ | OAC | doub | 1.21Å | 1.23Å | |
| CZ | CM | sing | 1.51Å | 1.53Å | |
| CM | HM1 | sing | 1.09Å | 1.12Å | |
| CM | HM2 | sing | 1.09Å | 1.11Å | |
| CM | HM3 | sing | 1.09Å | 1.11Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| C | OXT | sing | 1.34Å | 1.33Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 108.8° | 106.8° |
| CA | N | H2 | 112.5° | 106.7° |
| N | CA | CB | 108.8° | 109.4° |
| N | CA | C | 110.7° | 109.5° |
| N | CA | HA | 108.5° | 109.4° |
| H | N | H2 | 112.5° | 106.7° |
| CB | CA | C | 107.4° | 109.5° |
| CB | CA | HA | 111.7° | 109.5° |
| CA | CB | SG | 107.2° | 109.5° |
| CA | CB | HB2 | 113.0° | 109.4° |
| CA | CB | HB3 | 113.1° | 109.5° |
| C | CA | HA | 109.8° | 109.5° |
| CA | C | O | 120.4° | 120.0° |
| CA | C | OXT | 116.6° | 120.0° |
| SG | CB | HB2 | 113.0° | 109.5° |
| SG | CB | HB3 | 113.0° | 109.4° |
| CB | SG | CD | 104.1° | 100.0° |
| HB2 | CB | HB3 | 97.4° | 109.5° |
| SG | CD | NE | 116.5° | 109.5° |
| SG | CD | HD2 | 109.7° | 109.5° |
| SG | CD | HD3 | 109.7° | 109.5° |
| NE | CD | HD2 | 109.6° | 109.4° |
| NE | CD | HD3 | 109.7° | 109.5° |
| CD | NE | CZ | 126.0° | 120.0° |
| CD | NE | HE | 122.4° | 120.0° |
| HD2 | CD | HD3 | 100.6° | 109.4° |
| CZ | NE | HE | 111.6° | 120.0° |
| NE | CZ | OAC | 123.8° | 120.0° |
| NE | CZ | CM | 115.5° | 120.0° |
| OAC | CZ | CM | 120.6° | 120.0° |
| CZ | CM | HM1 | 115.5° | 109.5° |
| CZ | CM | HM2 | 110.0° | 109.5° |
| CZ | CM | HM3 | 110.0° | 109.4° |
| HM1 | CM | HM2 | 110.0° | 109.5° |
| HM1 | CM | HM3 | 110.0° | 109.4° |
| HM2 | CM | HM3 | 100.2° | 109.5° |
| O | C | OXT | 123.0° | 120.0° |
| C | OXT | HXT | 116.6° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.3° | 113.8° |
| N | CA | CB | C | 119.9° | 120.0° |
| N | CA | CB | HA | 119.7° | 119.9° |
| N | CA | C | HA | 119.7° | 120.0° |
| N | CA | CB | SG | 73.3° | 59.9° |
| N | CA | CB | HB2 | 161.4° | 180.0° |
| N | CA | CB | HB3 | 51.9° | 60.1° |
| N | CA | C | O | 35.7° | 30.0° |
| N | CA | C | OXT | 141.5° | 150.0° |
| H | N | CA | CB | 180.0° | 53.7° |
| H | N | CA | C | 62.1° | 173.8° |
| H | N | CA | HA | 58.4° | 66.2° |
| H2 | N | CA | CB | 54.7° | 60.1° |
| H2 | N | CA | C | 172.5° | 60.0° |
| H2 | N | CA | HA | 67.0° | 180.0° |
| CB | CA | C | HA | 121.6° | 120.0° |
| CA | CB | SG | HB2 | 125.2° | 120.0° |
| CA | CB | SG | HB3 | 125.3° | 120.1° |
| CA | CB | HB2 | HB3 | 119.0° | 120.0° |
| CA | CB | SG | CD | 158.9° | 180.0° |
| CB | CA | C | O | 82.9° | 89.9° |
| CB | CA | C | OXT | 99.9° | 90.0° |
| C | CA | CB | SG | 46.5° | 180.0° |
| C | CA | CB | HB2 | 78.7° | 60.0° |
| C | CA | CB | HB3 | 171.8° | 60.0° |
| CA | C | O | OXT | 177.0° | 179.9° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| HA | CA | CB | SG | 166.9° | 60.0° |
| HA | CA | CB | HB2 | 41.7° | 60.1° |
| HA | CA | CB | HB3 | 67.8° | 180.0° |
| HA | CA | C | O | 155.5° | 150.0° |
| HA | CA | C | OXT | 21.7° | 30.1° |
| SG | CB | HB2 | HB3 | 119.0° | 119.9° |
| CB | SG | CD | NE | 126.7° | 180.0° |
| CB | SG | CD | HD2 | 1.5° | 60.0° |
| CB | SG | CD | HD3 | 108.0° | 60.0° |
| HB2 | CB | SG | CD | 75.9° | 60.0° |
| HB3 | CB | SG | CD | 33.6° | 60.0° |
| SG | CD | NE | HD2 | 125.2° | 120.0° |
| SG | CD | NE | HD3 | 125.3° | 120.0° |
| SG | CD | HD2 | HD3 | 115.5° | 120.0° |
| SG | CD | NE | CZ | 38.8° | 90.0° |
| SG | CD | NE | HE | 141.1° | 90.1° |
| NE | CD | HD2 | HD3 | 115.5° | 119.9° |
| CD | NE | CZ | HE | 179.9° | 179.9° |
| CD | NE | CZ | OAC | 0.3° | 0.0° |
| CD | NE | CZ | CM | 179.9° | 180.0° |
| HD2 | CD | NE | CZ | 86.4° | 149.9° |
| HD2 | CD | NE | HE | 93.7° | 30.0° |
| HD3 | CD | NE | CZ | 164.1° | 30.0° |
| HD3 | CD | NE | HE | 15.8° | 149.9° |
| NE | CZ | OAC | CM | 179.6° | 180.0° |
| NE | CZ | CM | HM1 | 180.0° | 179.9° |
| NE | CZ | CM | HM2 | 54.7° | 60.0° |
| NE | CZ | CM | HM3 | 54.8° | 60.1° |
| HE | NE | CZ | OAC | 179.6° | 180.0° |
| HE | NE | CZ | CM | 0.0° | 0.0° |
| OAC | CZ | CM | HM1 | 0.4° | 0.1° |
| OAC | CZ | CM | HM2 | 125.6° | 120.0° |
| OAC | CZ | CM | HM3 | 124.9° | 119.9° |
| CZ | CM | HM1 | HM2 | 125.3° | 120.1° |
| CZ | CM | HM1 | HM3 | 125.3° | 119.9° |
| CZ | CM | HM2 | HM3 | 115.8° | 120.0° |
| HM1 | CM | HM2 | HM3 | 115.8° | 119.9° |
| O | C | OXT | HXT | 2.9° | 0.1° |
