Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

CXY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1BPBdoub1.48Å1.52Å
PBO2Bsing1.61Å1.51Å
PBO1'sing1.61Å1.64Å
PBO3Asing1.61Å1.55Å
O2BH2Bsing0.97Å0.95Å
O1'C1'sing1.43Å1.42Å
O3APAsing1.61Å1.65Å
PAO1Asing1.61Å1.48Å
PAO2Adoub1.48Å1.49Å
PAO5Dsing1.61Å1.59Å
O1AH1Asing0.97Å0.95Å
O5DC5Dsing1.43Å1.43Å
C5DC4Dsing1.53Å1.51Å
C5DH5'1sing1.09Å1.12Å
C5DH5'2sing1.09Å1.12Å
C4DO4Dsing1.45Å1.45Å
C4DC3Dsing1.54Å1.53Å
C4DH4Dsing1.09Å1.12Å
O4DC1Dsing1.44Å1.40Å
C3DO3Dsing1.43Å1.47Å
C3DC2Dsing1.55Å1.54Å
C3DH3Dsing1.09Å1.12Å
O3DH4sing0.97Å0.95Å
C2DO2Dsing1.43Å1.43Å
C2DC1Dsing1.54Å1.51Å
C2DH2Dsing1.09Å1.12Å
O2DH7sing0.97Å0.95Å
C1DN1sing1.47Å1.47Å
C1DH1Dsing1.09Å1.12Å
N1C6sing1.36Å1.39Å
N1C2sing1.34Å1.38Å
C6C5doub1.35Å1.31Å
C6H6sing1.08Å1.10Å
C5C4sing1.41Å1.42Å
C5H5sing1.08Å1.10Å
C4N3doub1.33Å1.40Å
C4N4sing1.38Å1.23Å
N3C2sing1.33Å1.38Å
C2O2doub1.22Å1.24Å
N4HN41sing0.97Å1.02Å
N4HN42sing0.97Å1.02Å
C1'C2'sing1.53Å1.51Å
C1'O5'sing1.43Å1.46Å
C1'H1'sing1.09Å1.12Å
C2'C3'sing1.53Å1.52Å
C2'O2'sing1.43Å1.44Å
C2'H2'sing1.09Å1.11Å
C3'C4'sing1.53Å1.53Å
C3'O3'sing1.43Å1.44Å
C3'H3'sing1.09Å1.11Å
C4'C5'sing1.53Å1.52Å
C4'O4'sing1.43Å1.43Å
C4'H4'sing1.09Å1.11Å
C5'O5'sing1.43Å1.43Å
C5'H5Dsing1.09Å1.12Å
C5'H5Bsing1.09Å1.12Å
O2'H3sing0.97Å0.95Å
O3'H2sing0.97Å0.95Å
O4'H1sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1BPBO2B114.1°109.5°
O1BPBO1'109.4°109.5°
O1BPBO3A97.2°109.5°
O2BPBO1'109.8°109.4°
O2BPBO3A116.1°109.4°
PBO2BH2B114.1°106.8°
O1'PBO3A109.5°109.5°
PBO1'C1'113.5°106.8°
PBO3APA131.8°106.8°
O1'C1'C2'106.1°109.4°
O1'C1'O5'112.9°109.4°
O1'C1'H1'109.8°109.4°
O3APAO1A111.1°109.5°
O3APAO2A104.8°109.4°
O3APAO5D101.5°109.5°
O1APAO2A114.4°109.5°
O1APAO5D109.7°109.5°
PAO1AH1A111.1°106.8°
O2APAO5D114.5°109.5°
PAO5DC5D117.9°106.8°
O5DC5DC4D108.5°109.5°
O5DC5DH5'1112.6°109.5°
O5DC5DH5'2112.5°109.5°
C4DC5DH5'1112.6°109.4°
C4DC5DH5'2112.6°109.5°
C5DC4DO4D107.7°110.3°
C5DC4DC3D117.8°110.5°
C5DC4DH4D104.5°110.4°
H5'1C5DH5'297.9°109.5°
O4DC4DC3D107.6°104.8°
O4DC4DH4D115.2°110.3°
C4DO4DC1D107.9°105.2°
C3DC4DH4D104.5°110.4°
C4DC3DO3D115.7°110.5°
C4DC3DC2D98.2°104.1°
C4DC3DH3D114.0°110.5°
O4DC1DC2D104.2°104.9°
O4DC1DN1108.0°110.3°
O4DC1DH1D115.3°110.4°
O3DC3DC2D112.3°110.5°
O3DC3DH3D100.4°110.5°
C3DO3DH4115.7°106.8°
C2DC3DH3D117.2°110.6°
C3DC2DO2D108.7°110.5°
C3DC2DC1D100.4°104.0°
C3DC2DH2D116.1°110.5°
O2DC2DC1D110.9°110.8°
O2DC2DH2D106.6°110.5°
C2DO2DH7108.7°106.8°
C1DC2DH2D114.1°110.4°
C2DC1DN1113.8°110.4°
C2DC1DH1D109.7°110.3°
N1C1DH1D106.0°110.4°
C1DN1C6120.3°119.8°
C1DN1C2118.4°119.8°
C6N1C2121.3°120.4°
N1C6C5122.7°119.3°
N1C6H6121.6°120.3°
N1C2N3114.2°121.1°
N1C2O2122.5°119.5°
C5C6H6115.7°120.4°
C6C5C4121.3°118.9°
C6C5H5115.2°120.5°
C4C5H5123.5°120.5°
C5C4N3113.6°119.7°
C5C4N4126.0°120.1°
N3C4N4120.4°120.2°
C4N3C2126.8°120.7°
C4N4HN41106.4°120.0°
C4N4HN42126.0°120.0°
N3C2O2123.3°119.5°
HN41N4HN42106.4°120.0°
C2'C1'O5'110.3°109.7°
C2'C1'H1'112.4°109.4°
C1'C2'C3'106.5°109.1°
C1'C2'O2'111.8°109.6°
C1'C2'H2'109.6°109.6°
O5'C1'H1'105.5°109.4°
C1'O5'C5'112.3°107.6°
C3'C2'O2'108.4°109.5°
C3'C2'H2'112.9°109.5°
C2'C3'C4'110.3°108.6°
C2'C3'O3'109.3°109.7°
C2'C3'H3'108.2°109.6°
O2'C2'H2'107.7°109.6°
C2'O2'H3111.8°106.8°
C4'C3'O3'106.9°109.6°
C4'C3'H3'110.6°109.6°
C3'C4'C5'109.7°109.0°
C3'C4'O4'110.1°109.6°
C3'C4'H4'109.4°109.5°
O3'C3'H3'111.6°109.7°
C3'O3'H2109.3°106.8°
C5'C4'O4'111.0°109.6°
C5'C4'H4'108.5°109.6°
C4'C5'O5'110.8°109.8°
C4'C5'H5D111.7°109.4°
C4'C5'H5B111.8°109.5°
O4'C4'H4'108.1°109.5°
C4'O4'H1110.1°106.8°
O5'C5'H5D111.8°109.4°
O5'C5'H5B111.7°109.4°
H5DC5'H5B98.6°109.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1BPBO2BO1'123.2°120.0°
O1BPBO2BO3A111.9°120.0°
O1BPBO1'O3A105.5°120.1°
O1BPBO2BH2B180.0°180.0°
O1BPBO1'C1'85.5°54.9°
O1BPBO3APA110.6°40.0°
O2BPBO1'O3A128.6°120.0°
O2BPBO1'C1'148.6°65.1°
O2BPBO3APA10.8°80.0°
O1'PBO2BH2B56.8°60.0°
O1'PBO3APA135.8°160.0°
PBO1'C1'C2'141.4°149.8°
PBO1'C1'O5'97.6°89.9°
PBO1'C1'H1'19.8°30.0°
O3APBO2BH2B68.1°60.0°
O3APBO1'C1'20.0°175.0°
PBO3APAO1A52.7°80.0°
PBO3APAO2A176.7°40.0°
PBO3APAO5D63.9°160.0°
O1'C1'C2'O5'122.6°120.0°
O1'C1'C2'H1'120.0°119.9°
O1'C1'O5'H1'119.9°119.9°
O1'C1'C2'C3'61.0°58.7°
O1'C1'C2'O2'57.3°61.1°
O1'C1'C2'H2'176.6°178.6°
O1'C1'O5'C5'56.0°52.5°
O3APAO1AO2A118.3°120.0°
O3APAO1AO5D111.4°120.0°
O3APAO2AO5D110.2°120.0°
O3APAO1AH1A180.0°60.0°
O3APAO5DC5D75.2°175.0°
O1APAO2AO5D127.9°120.0°
O1APAO5DC5D167.3°65.0°
O2APAO1AH1A61.7°179.9°
O2APAO5DC5D37.0°55.0°
O5DPAO1AH1A68.6°60.0°
PAO5DC5DC4D164.6°180.0°
PAO5DC5DH5'139.3°60.0°
PAO5DC5DH5'270.2°60.0°
O5DC5DC4DH5'1125.2°120.0°
O5DC5DC4DH5'2125.2°120.0°
O5DC5DH5'1H5'2118.5°120.0°
O5DC5DC4DO4D85.8°66.5°
O5DC5DC4DC3D35.9°178.1°
O5DC5DC4DH4D151.2°55.8°
C4DC5DH5'1H5'2118.5°120.0°
C5DC4DO4DC3D127.8°118.9°
C5DC4DO4DH4D116.1°122.2°
C5DC4DC3DH4D115.3°122.3°
C5DC4DO4DC1D127.5°159.5°
C5DC4DC3DO3D145.9°98.4°
C5DC4DC3DC2D94.4°143.0°
C5DC4DC3DH3D30.3°24.2°
H5'1C5DC4DO4D39.4°173.5°
H5'1C5DC4DC3D161.1°58.1°
H5'1C5DC4DH4D83.5°64.2°
H5'2C5DC4DO4D148.9°53.5°
H5'2C5DC4DC3D89.3°61.9°
H5'2C5DC4DH4D26.0°175.7°
O4DC4DC3DH4D122.9°118.8°
O4DC4DC3DO3D92.4°142.7°
O4DC4DC3DC2D27.3°24.1°
O4DC4DC3DH3D152.0°94.6°
C4DO4DC1DC2D27.9°40.5°
C4DO4DC1DN1149.2°159.3°
C4DO4DC1DH1D92.4°78.4°
C3DC4DO4DC1D0.4°40.5°
C4DC3DO3DC2D111.7°114.7°
C4DC3DO3DH3D123.1°122.7°
C4DC3DC2DH3D122.4°118.7°
C4DC3DO3DH4180.0°180.0°
C4DC3DC2DO2D158.6°118.8°
C4DC3DC2DC1D42.2°0.2°
C4DC3DC2DH2D81.3°118.6°
H4DC4DO4DC1D116.5°78.3°
H4DC4DC3DO3D30.5°23.9°
H4DC4DC3DC2D150.2°94.7°
H4DC4DC3DH3D85.0°146.6°
O4DC1DC2DC3D44.9°23.8°
O4DC1DC2DO2D159.7°142.6°
O4DC1DC2DN1117.4°118.8°
O4DC1DC2DH1D124.0°118.9°
O4DC1DC2DH2D80.0°94.7°
O4DC1DN1H1D124.1°122.3°
O4DC1DN1C654.2°128.0°
O4DC1DN1C2124.9°52.1°
O3DC3DC2DH3D115.4°122.6°
O3DC3DC2DO2D36.4°0.1°
O3DC3DC2DC1D80.0°118.8°
O3DC3DC2DH2D156.5°122.7°
C2DC3DO3DH468.3°65.3°
C3DC2DO2DC1D109.5°114.7°
C3DC2DO2DH2D125.9°122.6°
C3DC2DC1DH2D125.0°118.5°
C3DC2DO2DH7180.0°61.4°
C3DC2DC1DN1162.4°142.7°
C3DC2DC1DH1D79.1°95.0°
H3DC3DO3DH456.9°57.3°
H3DC3DC2DO2D79.0°122.5°
H3DC3DC2DC1D164.6°118.5°
H3DC3DC2DH2D41.1°0.1°
O2DC2DC1DH2D120.3°122.8°
O2DC2DC1DN182.9°98.6°
O2DC2DC1DH1D35.7°23.7°
C1DC2DO2DH770.5°176.2°
C2DC1DN1H1D120.7°122.3°
C2DC1DN1C661.0°116.5°
C2DC1DN1C2119.9°63.4°
H2DC2DO2DH754.2°61.1°
H2DC2DC1DN137.4°24.2°
H2DC2DC1DH1D156.0°146.5°
C1DN1C6C2179.1°179.9°
C1DN1C6C5178.9°179.7°
C1DN1C6H61.1°0.0°
C1DN1C2N3179.0°180.0°
C1DN1C2O21.5°0.1°
H1DC1DN1C6178.3°5.8°
H1DC1DN1C20.8°174.3°
N1C6C5H6180.0°179.7°
N1C6C5C41.0°0.6°
N1C6C5H5179.0°180.0°
C6N1C2N30.1°0.1°
C6N1C2O2179.4°180.0°
C2N1C6C50.2°0.4°
C2N1C6H6179.8°179.9°
N1C2N3C40.9°0.1°
N1C2N3O2179.5°179.9°
C6C5C4H5180.0°179.5°
C6C5C4N31.7°0.5°
C6C5C4N4178.1°179.7°
H6C6C5C4179.0°179.7°
H6C6C5H51.0°0.3°
C5C4N3N4179.8°179.7°
C5C4N3C21.7°0.3°
C5C4N4HN4154.7°179.8°
C5C4N4HN42180.0°0.6°
H5C5C4N3178.4°180.0°
H5C5C4N41.9°0.3°
C4N3C2O2178.6°180.0°
N3C4N4HN41125.0°0.1°
N3C4N4HN420.3°179.7°
N4C4N3C2178.1°180.0°
C4N4HN41HN42136.5°179.6°
C2'C1'O5'H1'121.6°120.1°
C1'C2'C3'O2'120.5°119.9°
C1'C2'C3'H2'120.3°119.9°
C1'C2'O2'H2'120.4°120.3°
C1'C2'C3'C4'59.5°53.8°
C1'C2'C3'O3'176.7°173.6°
C1'C2'C3'H3'61.6°65.9°
C2'C1'O5'C5'62.5°67.6°
C1'C2'O2'H3180.0°60.4°
O5'C1'C2'C3'61.6°61.3°
O5'C1'C2'O2'179.9°178.9°
O5'C1'C2'H2'60.8°58.6°
C1'O5'C5'C4'57.6°67.6°
C1'O5'C5'H5D177.1°172.3°
C1'O5'C5'H5B67.7°52.5°
H1'C1'C2'C3'179.0°178.6°
H1'C1'C2'O2'62.7°58.8°
H1'C1'C2'H2'56.6°61.5°
H1'C1'O5'C5'175.9°172.4°
C3'C2'O2'H2'122.4°120.1°
C2'C3'C4'O3'118.7°119.9°
C2'C3'C4'H3'119.7°119.7°
C2'C3'O3'H3'119.7°120.5°
C2'C3'C4'C5'56.4°53.7°
C2'C3'C4'O4'178.9°173.6°
C2'C3'C4'H4'62.4°66.2°
C3'C2'O2'H362.9°180.0°
C2'C3'O3'H2180.0°179.2°
O2'C2'C3'C4'180.0°173.7°
O2'C2'C3'O3'62.8°66.5°
O2'C2'C3'H3'58.9°54.0°
H2'C2'C3'C4'60.8°66.1°
H2'C2'C3'O3'56.4°53.7°
H2'C2'C3'H3'178.1°174.2°
H2'C2'O2'H359.6°59.9°
C4'C3'O3'H3'121.0°120.4°
C3'C4'C5'O4'121.9°119.9°
C3'C4'C5'H4'119.5°119.9°
C3'C4'O4'H4'119.5°120.2°
C3'C4'C5'O5'54.1°61.3°
C3'C4'C5'H5D179.4°178.6°
C3'C4'C5'H5B71.1°58.8°
C4'C3'O3'H260.6°60.1°
C3'C4'O4'H1180.0°179.6°
O3'C3'C4'C5'175.2°173.6°
O3'C3'C4'O4'62.4°66.5°
O3'C3'C4'H4'56.3°53.7°
H3'C3'C4'C5'63.2°66.0°
H3'C3'C4'O4'59.3°53.9°
H3'C3'C4'H4'177.9°174.1°
H3'C3'O3'H260.4°60.3°
C5'C4'O4'H4'118.8°120.2°
C4'C5'O5'H5D125.3°120.1°
C4'C5'O5'H5B125.3°120.2°
C4'C5'H5DH5B117.7°119.9°
C5'C4'O4'H158.3°60.0°
O4'C4'C5'O5'176.0°178.8°
O4'C4'C5'H5D58.7°58.7°
O4'C4'C5'H5B50.8°61.1°
H4'C4'C5'O5'65.3°58.6°
H4'C4'C5'H5D59.9°61.5°
H4'C4'C5'H5B169.4°178.7°
H4'C4'O4'H160.6°60.2°
O5'C5'H5DH5B117.6°119.8°

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon