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CXR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2BPBdoub1.48Å1.58Å
PBO3Asing1.61Å1.60Å
PBO1Bsing1.61Å1.52Å
PBO5Dsing1.61Å1.61Å
O3APAsing1.61Å1.65Å
O5DC5Dsing1.43Å1.45Å
C5DC4Dsing1.53Å1.52Å
C4DC3Dsing1.54Å1.53Å
C4DO4Dsing1.42Å1.46Å
C3DO3Dsing1.43Å1.47Å
C3DC2Dsing1.54Å1.49Å
C2DO2Dsing1.43Å1.47Å
C2DC1Dsing1.54Å1.51Å
O4DC1Dsing1.42Å1.43Å
C1DN1sing1.47Å1.51Å
N1C6sing1.39Å1.40Å
N1C2sing1.36Å1.45Å
C6N6doub1.31Å1.33Å
C6C5sing1.47Å1.47Å
N6HN6sing0.97Å1.00Å
C5N7sing1.34Å1.37ÅAromatic
C5C4doub1.41Å1.44ÅAromatic
N7C8doub1.30Å1.37ÅAromatic
C8N9sing1.37Å1.38ÅAromatic
C2N3doub1.31Å1.34Å
N3C4sing1.35Å1.40Å
C4N9sing1.36Å1.36ÅAromatic
N9C1'sing1.46Å1.48Å
C1'O4'sing1.44Å1.47Å
C1'C2'sing1.54Å1.49Å
O4'C4'sing1.43Å1.48Å
C2'O2'sing1.43Å1.40Å
C2'C3'sing1.54Å1.51Å
C3'C4'sing1.54Å1.54Å
C4'C5'sing1.53Å1.53Å
C5'O5'sing1.43Å1.43Å
O5'PAsing1.61Å1.61Å
PAO2Adoub1.48Å1.55Å
PAO1Asing1.61Å1.52Å
C3'O3'sing1.43Å1.43Å
O1BH1Bsing0.97Å0.95Å
C5DH11sing1.09Å1.10Å
C5DH12sing1.09Å1.10Å
C4DH4'sing1.09Å1.10Å
C3DH3'sing1.09Å1.10Å
O3DH2sing0.97Å0.95Å
C2DH1sing1.09Å1.10Å
O2DH2'sing0.97Å0.95Å
C1DH1'sing1.09Å1.10Å
C8H8sing1.08Å1.08Å
C2H3sing1.08Å1.08Å
C1'H4sing1.09Å1.10Å
C2'H9sing1.09Å1.10Å
O2'H10sing0.97Å0.95Å
C3'H6sing1.09Å1.10Å
C4'H5sing1.09Å1.10Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
O1AH1Asing0.97Å0.95Å
O3'H7sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2BPBO3A108.7°109.6°
O2BPBO1B121.7°109.6°
O2BPBO5D109.5°109.5°
O3APBO1B108.3°109.6°
O3APBO5D99.7°109.0°
PBO3APA124.4°134.6°
O1BPBO5D106.7°109.6°
PBO1BH1B109.5°114.0°
PBO5DC5D123.0°122.5°
O3APAO5'97.7°109.6°
O3APAO2A107.6°109.4°
O3APAO1A111.7°109.5°
O5DC5DC4D110.0°109.8°
O5DC5DH11109.3°109.5°
O5DC5DH12109.3°109.4°
C5DC4DC3D114.1°109.3°
C5DC4DO4D109.8°110.3°
C4DC5DH11109.3°109.4°
C4DC5DH12109.3°109.4°
C5DC4DH4'104.4°110.2°
C3DC4DO4D103.8°107.8°
C4DC3DO3D113.5°110.8°
C4DC3DC2D101.2°102.8°
C3DC4DH4'110.3°107.7°
C4DC3DH3'113.3°110.8°
C4DO4DC1D110.7°110.7°
O4DC4DH4'114.7°111.3°
O3DC3DC2D112.2°110.8°
O3DC3DH3'102.5°110.6°
C3DO3DH2109.5°113.9°
C3DC2DO2D106.9°110.4°
C3DC2DC1D105.0°104.4°
C2DC3DH3'114.6°110.8°
C3DC2DH1112.6°110.4°
O2DC2DC1D105.1°110.4°
O2DC2DH1112.4°110.4°
C2DO2DH2'109.5°114.0°
C2DC1DO4D104.9°108.2°
C2DC1DN1118.4°108.8°
C1DC2DH1114.2°110.5°
C2DC1DH1'105.4°108.9°
O4DC1DN1105.3°110.4°
O4DC1DH1'118.5°110.8°
C1DN1C6119.0°119.2°
C1DN1C2118.8°119.7°
N1C1DH1'105.0°109.7°
C6N1C2118.7°121.0°
N1C6N6120.7°123.1°
N1C6C5117.9°113.9°
N1C2N3123.1°125.0°
N1C2H3118.4°117.5°
N6C6C5121.1°123.0°
C6N6HN6112.0°120.0°
C6C5N7132.5°132.8°
C6C5C4119.7°120.3°
N7C5C4107.8°106.9°
C5N7C8107.5°109.8°
C5C4N3119.7°120.2°
C5C4N9106.5°106.4°
N7C8N9109.9°109.3°
N7C8H8125.1°125.3°
C8N9C4108.3°107.2°
C8N9C1'124.3°125.6°
N9C8H8125.1°125.3°
C2N3C4120.3°119.2°
N3C2H3118.5°117.5°
N3C4N9133.7°133.3°
C4N9C1'127.3°127.1°
N9C1'O4'105.0°110.5°
N9C1'C2'114.6°110.5°
N9C1'H4108.7°110.4°
O4'C1'C2'108.1°107.0°
C1'O4'C4'109.6°109.2°
O4'C1'H4115.1°109.4°
C1'C2'O2'107.9°110.6°
C1'C2'C3'104.4°103.7°
C2'C1'H4105.7°109.0°
C1'C2'H9112.8°110.6°
O4'C4'C3'104.8°107.8°
O4'C4'C5'112.4°110.6°
O4'C4'H5113.0°109.4°
O2'C2'C3'106.8°110.6°
O2'C2'H9110.6°110.5°
C2'O2'H10109.5°114.0°
C2'C3'C4'106.5°105.5°
C2'C3'O3'89.7°110.3°
C3'C2'H9113.9°110.6°
C2'C3'H6131.8°110.3°
C3'C4'C5'115.4°109.3°
C4'C3'O3'129.5°110.3°
C4'C3'H694.3°110.3°
C3'C4'H5109.8°110.7°
C4'C5'O5'107.0°109.8°
C5'C4'H5101.7°109.1°
C4'C5'H5'1110.3°109.4°
C4'C5'H5'2110.3°109.4°
C5'O5'PA122.9°122.6°
O5'C5'H5'1110.3°109.5°
O5'C5'H5'2110.3°109.5°
O5'PAO2A107.3°109.5°
O5'PAO1A110.0°109.5°
O2APAO1A120.1°109.5°
PAO1AH1A109.5°114.0°
O3'C3'H6110.0°110.2°
C3'O3'H7109.5°114.0°
H11C5DH12109.6°109.4°
H5'1C5'H5'2108.6°109.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2BPBO3AO1B134.2°120.2°
O2BPBO3AO5D114.5°119.8°
O2BPBO1BO5D126.5°120.2°
O2BPBO3APA74.7°20.6°
O2BPBO5DC5D48.2°30.9°
O2BPBO1BH1B0.0°60.0°
O3APBO1BO5D106.5°119.6°
O3APBO5DC5D162.2°150.7°
PBO3APAO5'155.7°171.3°
PBO3APAO2A93.3°68.7°
PBO3APAO1A40.5°51.2°
O3APBO1BH1B127.0°60.2°
O1BPBO3APA59.5°99.6°
O1BPBO5DC5D85.3°89.4°
O5DPBO3APA170.8°140.5°
PBO5DC5DC4D133.6°179.3°
O5DPBO1BH1B126.5°179.8°
PBO5DC5DH1113.6°59.3°
PBO5DC5DH12106.4°60.6°
O3APAO5'C5'49.4°30.1°
O3APAO5'O2A111.2°120.0°
O3APAO5'O1A116.5°120.1°
O3APAO2AO1A129.2°119.9°
O3APAO1AH1A127.3°60.0°
O5DC5DC4DH11120.0°120.1°
O5DC5DC4DH12120.0°120.1°
O5DC5DC4DC3D48.6°86.8°
O5DC5DC4DO4D67.4°31.5°
O5DC5DH11H12119.8°119.9°
O5DC5DC4DH4'169.2°154.9°
C5DC4DC3DO4D119.5°120.0°
C5DC4DC3DH4'117.2°119.8°
C5DC4DO4DH4'117.1°122.7°
C5DC4DC3DO3D85.7°97.2°
C5DC4DC3DC2D153.9°144.4°
C5DC4DO4DC1D142.0°136.3°
C4DC5DH11H12119.8°119.8°
C5DC4DC3DH3'30.8°25.9°
C3DC4DO4DH4'120.4°117.9°
C4DC3DO3DC2D114.0°113.4°
C4DC3DO3DH3'122.6°123.2°
C4DC3DC2DH3'122.3°118.4°
C4DC3DC2DO2D74.3°96.5°
C4DC3DC2DC1D37.0°22.3°
C3DC4DO4DC1D19.6°17.0°
C3DC4DC5DH1171.4°33.3°
C3DC4DC5DH12168.6°153.1°
C4DC3DO3DH2180.0°180.0°
C4DC3DC2DH1161.8°141.1°
O4DC4DC3DO3D154.9°142.8°
O4DC4DC3DC2D34.5°24.4°
C4DO4DC1DC2D3.6°2.0°
C4DO4DC1DN1122.1°121.0°
O4DC4DC5DH11172.6°151.6°
O4DC4DC5DH1252.6°88.6°
O4DC4DC3DH3'88.7°94.0°
C4DO4DC1DH1'120.8°117.3°
O3DC3DC2DH3'116.4°123.2°
O3DC3DC2DO2D47.1°21.9°
O3DC3DC2DC1D158.3°140.6°
O3DC3DC4DH4'31.5°22.5°
O3DC3DC2DH176.9°100.5°
C3DC2DO2DC1D111.2°115.0°
C3DC2DO2DH1124.0°122.4°
C3DC2DC1DH1123.7°118.8°
C3DC2DC1DO4D26.1°13.5°
C3DC2DC1DN190.9°106.5°
C2DC3DC4DH4'88.9°95.8°
C2DC3DO3DH266.0°66.5°
C3DC2DO2DH2'180.0°61.5°
C3DC2DC1DH1'152.0°134.0°
O2DC2DC1DH1123.7°122.5°
O2DC2DC1DO4D86.5°105.2°
O2DC2DC1DN1156.5°134.8°
O2DC2DC3DH3'163.4°145.1°
O2DC2DC1DH1'39.4°15.3°
C2DC1DO4DN1125.7°118.9°
C2DC1DO4DH1'117.2°119.4°
C2DC1DN1H1'117.3°119.0°
C2DC1DN1C667.4°69.6°
C2DC1DN1C291.3°110.4°
C1DC2DC3DH3'85.3°96.1°
C1DC2DO2DH2'68.8°176.5°
O4DC1DN1H1'125.9°122.4°
O4DC1DN1C6175.8°171.8°
O4DC1DN1C225.5°8.2°
C1DO4DC4DH4'100.9°101.0°
O4DC1DC2DH1149.9°132.3°
C1DN1C6C2158.7°179.9°
C1DN1C6N619.5°6.8°
C1DN1C6C5167.1°173.2°
C1DN1C2N3167.0°174.3°
N1C1DC2DH132.8°12.3°
C1DN1C2H313.0°5.7°
N1C6N6C5173.2°180.0°
N1C6N6HN6173.1°180.0°
N1C6C5N7175.6°177.5°
N1C6C5C46.3°2.9°
C6N1C2N38.2°5.6°
C6N1C1DH1'49.9°49.5°
C6N1C2H3171.7°174.4°
C2N1C6N6178.2°173.3°
C2N1C6C58.4°6.7°
N1C2N3H3180.0°180.0°
N1C2N3C45.1°0.3°
C2N1C1DH1'151.4°130.6°
N6C6C5N72.3°2.4°
N6C6C5C4179.6°177.1°
C5C6N6HN60.0°0.0°
C6C5N7C4178.3°179.6°
C6C5N7C8177.5°177.9°
C6C5C4N33.2°2.6°
C6C5C4N9178.9°176.0°
C5N7C8N91.7°0.4°
N7C5C4N3178.2°177.1°
N7C5C4N90.3°4.3°
C5N7C8H8178.4°179.6°
C4C5N7C80.8°2.4°
C5C4N9C81.3°4.5°
C5C4N3C22.6°4.3°
C5C4N3N9177.2°178.1°
C5C4N9C1'177.5°173.6°
N7C8N9H8180.0°180.0°
N7C8N9C41.9°3.2°
N7C8N9C1'178.2°174.9°
C8N9C4N3178.8°177.1°
C8N9C4C1'176.2°178.1°
C8N9C1'O4'118.2°141.2°
C8N9C1'C2'123.4°100.6°
C8N9C1'H45.5°20.1°
C2N3C4N9179.8°173.8°
N3C4N9C1'5.1°4.8°
C4N3C2H3174.8°179.6°
C4N9C1'O4'57.4°36.6°
C4N9C1'C2'61.0°81.6°
C4N9C8H8178.2°176.8°
C4N9C1'H4178.9°157.7°
N9C1'O4'C2'122.7°120.4°
N9C1'O4'H4119.5°121.7°
N9C1'C2'H4119.6°121.5°
N9C1'O4'C4'134.4°147.9°
N9C1'C2'O2'106.7°98.2°
N9C1'C2'C3'139.9°143.2°
C1'N9C8H81.9°5.1°
N9C1'C2'H915.8°24.6°
O4'C1'C2'H4123.7°118.2°
O4'C1'C2'O2'136.6°141.5°
O4'C1'C2'C3'23.3°22.9°
C1'O4'C4'C3'4.7°20.4°
C1'O4'C4'C5'121.4°139.9°
O4'C1'C2'H9100.9°95.7°
C1'O4'C4'H5124.2°99.9°
C2'C1'O4'C4'11.7°27.5°
C1'C2'O2'C3'111.7°114.4°
C1'C2'O2'H9123.9°122.9°
C1'C2'C3'H9123.5°118.6°
C1'C2'C3'C4'25.9°10.6°
C1'C2'C3'O3'105.5°108.5°
C1'C2'O2'H10180.0°180.0°
C1'C2'C3'H6137.6°129.6°
O4'C4'C3'C2'19.1°5.2°
O4'C4'C3'C5'124.2°120.3°
O4'C4'C3'H5121.6°119.5°
O4'C4'C5'H5121.1°120.4°
O4'C4'C5'O5'72.4°70.2°
O4'C4'C3'O3'84.6°124.2°
C4'O4'C1'H4106.1°90.4°
O4'C4'C3'H6155.1°113.9°
O4'C4'C5'H5'1167.6°169.7°
O4'C4'C5'H5'247.6°49.9°
O2'C2'C3'H9122.4°122.7°
O2'C2'C3'C4'140.1°129.2°
O2'C2'C3'O3'8.7°10.1°
O2'C2'C1'H412.9°23.4°
O2'C2'C3'H6108.3°111.7°
C2'C3'C4'O3'103.7°119.1°
C2'C3'C4'H6136.0°119.1°
C2'C3'C4'C5'105.1°125.4°
C2'C3'O3'H6135.0°121.9°
C3'C2'C1'H4100.5°95.2°
C3'C2'O2'H1068.3°65.6°
C2'C3'C4'H5140.7°114.4°
C2'C3'O3'H7180.0°61.5°
C3'C4'C5'H5118.7°121.1°
C3'C4'C5'O5'167.5°171.3°
C4'C3'O3'H6113.7°121.9°
C4'C3'C2'H997.5°108.1°
C3'C4'C5'H5'147.5°51.2°
C3'C4'C5'H5'272.5°68.6°
C4'C3'O3'H768.7°177.7°
C4'C5'O5'H5'1120.0°120.1°
C4'C5'O5'H5'2120.0°120.1°
C4'C5'O5'PA178.2°146.7°
C5'C4'C3'O3'151.2°115.5°
C5'C4'C3'H630.8°6.4°
C4'C5'H5'1H5'2121.0°119.8°
C5'O5'PAO2A160.5°150.1°
C5'O5'PAO1A67.2°89.9°
O5'C5'C4'H548.7°50.2°
O5'C5'H5'1H5'2121.0°119.9°
O5'PAO2AO1A126.5°120.0°
PAO5'C5'H5'161.8°93.2°
PAO5'C5'H5'258.2°26.6°
O5'PAO1AH1A125.3°179.9°
O2APAO1AH1A0.0°59.9°
O3'C3'C2'H9131.1°132.8°
O3'C3'C4'H537.0°4.7°
H11C5DC4DH4'49.2°85.0°
H12C5DC4DH4'70.8°34.8°
H4'C4DC3DH3'148.0°145.7°
H3'C3DO3DH257.4°56.8°
H3'C3DC2DH139.5°22.7°
H1C2DO2DH2'56.0°60.9°
H1C2DC1DH1'84.2°107.2°
H4C1'C2'H9135.4°146.2°
H9C2'O2'H1056.1°57.2°
H9C2'C3'H614.1°11.0°
H6C3'C4'H583.4°126.5°
H6C3'O3'H745.0°60.4°
H5C4'C5'H5'171.3°70.0°
H5C4'C5'H5'2168.7°170.3°

223532

PDB entries from 2024-08-07

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