CX2

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
P	N4'	sing	1.68Å	1.62Å
P	O5'	sing	1.61Å	1.58Å
P	OP1	doub	1.48Å	1.47Å
S	C8'	sing	1.81Å	1.83Å
S	HS	sing	1.34Å	1.30Å
N1	C2	sing	1.35Å	1.41Å
N1	C6	sing	1.36Å	1.41Å
N1	C1'	sing	1.46Å	1.49Å
C2	O2	doub	1.22Å	1.23Å
C2	N3	sing	1.33Å	1.41Å
N3	C4	doub	1.33Å	1.40Å
C4	N4	sing	1.38Å	1.33Å
C4	C5	sing	1.41Å	1.40Å
N4	HN4	sing	0.97Å	1.00Å
N4	HN4A	sing	0.97Å	1.00Å
C5	C6	doub	1.35Å	1.40Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
C1'	C2'	sing	1.54Å	1.53Å
C1'	O4'	sing	1.44Å	1.45Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	C3'	sing	1.55Å	1.53Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å
C3'	O3'	sing	1.43Å	1.43Å
C3'	C4'	sing	1.55Å	1.52Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C4'	O4'	sing	1.44Å	1.47Å
C4'	C5'	sing	1.53Å	1.52Å
C4'	H4'	sing	1.09Å	1.10Å
N4'	C7'	sing	1.47Å	1.47Å
N4'	HN4'	sing	1.01Å	1.00Å
C5'	O5'	sing	1.43Å	1.43Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
C7'	C8'	sing	1.53Å	1.53Å
C7'	H7'	sing	1.09Å	1.10Å
C7'	H7'A	sing	1.09Å	1.10Å
C8'	H8'	sing	1.09Å	1.10Å
C8'	H8'A	sing	1.09Å	1.10Å
P	OP3	sing	1.61Å	1.72Å
OP3	HOP3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N4'	P	O5'	105.8°	109.5°
N4'	P	OP1	111.2°	109.5°
P	N4'	C7'	121.9°	111.0°
P	N4'	HN4'	105.5°	111.0°
N4'	P	OP3	118.7°	109.5°
O5'	P	OP1	111.4°	109.5°
P	O5'	C5'	118.7°	123.0°
O5'	P	OP3	119.6°	109.4°
OP1	P	OP3	89.2°	109.5°
C8'	S	HS	102.0°	103.0°
S	C8'	C7'	112.7°	109.5°
S	C8'	H8'	108.4°	109.4°
S	C8'	H8'A	108.4°	109.5°
C2	N1	C6	119.6°	120.4°
C2	N1	C1'	119.1°	119.8°
N1	C2	O2	120.3°	119.5°
N1	C2	N3	119.8°	121.1°
C6	N1	C1'	121.3°	119.8°
N1	C6	C5	120.2°	119.3°
N1	C6	H6	119.9°	120.4°
N1	C1'	C2'	117.2°	109.9°
N1	C1'	O4'	104.2°	109.9°
N1	C1'	H1'	106.5°	109.9°
O2	C2	N3	120.0°	119.5°
C2	N3	C4	120.2°	120.7°
N3	C4	N4	119.6°	120.2°
N3	C4	C5	120.0°	119.6°
N4	C4	C5	120.4°	120.2°
C4	N4	HN4	120.0°	120.0°
C4	N4	HN4A	120.0°	120.0°
C4	C5	C6	120.4°	119.0°
C4	C5	H5	119.8°	120.5°
HN4	N4	HN4A	120.0°	120.1°
C6	C5	H5	119.8°	120.5°
C5	C6	H6	119.9°	120.4°
C2'	C1'	O4'	104.3°	107.2°
C2'	C1'	H1'	106.4°	109.8°
C1'	C2'	C3'	102.1°	104.2°
C1'	C2'	H2'	112.0°	110.5°
C1'	C2'	H2'A	112.0°	110.4°
O4'	C1'	H1'	118.9°	110.0°
C1'	O4'	C4'	108.7°	107.0°
C3'	C2'	H2'	112.0°	110.5°
C3'	C2'	H2'A	112.0°	110.5°
C2'	C3'	O3'	112.2°	110.9°
C2'	C3'	C4'	102.9°	102.1°
C2'	C3'	H3'	110.5°	111.0°
H2'	C2'	H2'A	106.8°	110.5°
O3'	C3'	C4'	104.4°	110.9°
O3'	C3'	H3'	109.1°	110.8°
C3'	O3'	HO3'	109.5°	114.0°
C4'	C3'	H3'	117.5°	110.9°
C3'	C4'	O4'	106.9°	103.5°
C3'	C4'	C5'	110.0°	110.6°
C3'	C4'	H4'	111.3°	110.7°
O4'	C4'	C5'	110.9°	110.6°
O4'	C4'	H4'	110.4°	110.6°
C5'	C4'	H4'	107.4°	110.7°
C4'	C5'	O5'	111.2°	109.5°
C4'	C5'	H5'	108.9°	109.5°
C4'	C5'	H5'A	108.9°	109.5°
C7'	N4'	HN4'	105.5°	111.0°
N4'	C7'	C8'	108.2°	109.5°
N4'	C7'	H7'	109.9°	109.4°
N4'	C7'	H7'A	109.9°	109.5°
O5'	C5'	H5'	108.9°	109.5°
O5'	C5'	H5'A	108.9°	109.4°
H5'	C5'	H5'A	110.1°	109.5°
C8'	C7'	H7'	109.9°	109.5°
C8'	C7'	H7'A	109.9°	109.5°
C7'	C8'	H8'	108.4°	109.5°
C7'	C8'	H8'A	108.4°	109.5°
H7'	C7'	H7'A	109.1°	109.5°
H8'	C8'	H8'A	110.5°	109.5°
P	OP3	HOP3	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N4'	P	O5'	OP1	120.9°	120.1°
N4'	P	O5'	OP3	137.2°	120.0°
N4'	P	OP1	OP3	120.6°	120.0°
P	N4'	C7'	HN4'	120.0°	124.0°
N4'	P	O5'	C5'	160.0°	75.1°
P	N4'	C7'	C8'	120.4°	135.0°
P	N4'	C7'	H7'	0.5°	105.0°
P	N4'	C7'	H7'A	119.6°	15.0°
N4'	P	OP3	HOP3	113.8°	60.0°
O5'	P	OP1	OP3	121.7°	120.0°
P	O5'	C5'	C4'	130.1°	180.0°
O5'	P	N4'	C7'	147.8°	60.0°
O5'	P	N4'	HN4'	92.2°	176.0°
P	O5'	C5'	H5'	10.1°	60.0°
P	O5'	C5'	H5'A	109.9°	60.0°
O5'	P	OP3	HOP3	114.3°	60.0°
OP1	P	N4'	C7'	91.2°	180.0°
OP1	P	N4'	HN4'	28.8°	56.0°
OP1	P	O5'	C5'	39.1°	45.0°
OP1	P	OP3	HOP3	0.0°	180.0°
S	C8'	C7'	N4'	164.8°	180.0°
S	C8'	C7'	H8'	120.0°	119.9°
S	C8'	C7'	H8'A	120.0°	120.0°
S	C8'	C7'	H7'	44.8°	60.0°
S	C8'	C7'	H7'A	75.2°	60.0°
S	C8'	H8'	H8'A	118.7°	120.0°
HS	S	C8'	C7'	180.0°	180.0°
HS	S	C8'	H8'	60.0°	60.0°
HS	S	C8'	H8'A	60.0°	60.0°
C2	N1	C6	C1'	179.1°	179.7°
N1	C2	O2	N3	180.0°	179.9°
N1	C2	N3	C4	0.1°	0.0°
C2	N1	C6	C5	0.4°	0.0°
C2	N1	C6	H6	179.7°	180.0°
C2	N1	C1'	C2'	168.6°	65.0°
C2	N1	C1'	O4'	76.8°	52.8°
C2	N1	C1'	H1'	49.7°	174.0°
C6	N1	C2	O2	179.8°	180.0°
C6	N1	C2	N3	0.3°	0.0°
N1	C6	C5	C4	0.3°	0.0°
N1	C6	C5	H6	180.0°	180.0°
N1	C6	C5	H5	179.7°	180.0°
C6	N1	C1'	C2'	12.3°	114.7°
C6	N1	C1'	O4'	102.2°	127.5°
C6	N1	C1'	H1'	131.2°	6.2°
C1'	N1	C2	O2	0.7°	0.2°
C1'	N1	C2	N3	179.4°	179.7°
C1'	N1	C6	C5	179.5°	179.7°
C1'	N1	C6	H6	0.6°	0.2°
N1	C1'	C2'	O4'	114.5°	119.4°
N1	C1'	C2'	H1'	119.0°	121.0°
N1	C1'	O4'	H1'	118.3°	121.1°
N1	C1'	C2'	C3'	152.8°	121.4°
N1	C1'	C2'	H2'	87.2°	119.8°
N1	C1'	C2'	H2'A	32.8°	2.8°
N1	C1'	O4'	C4'	149.9°	145.9°
O2	C2	N3	C4	180.0°	180.0°
C2	N3	C4	N4	180.0°	180.0°
C2	N3	C4	C5	0.0°	0.0°
N3	C4	N4	C5	179.9°	180.0°
N3	C4	N4	HN4	0.0°	0.0°
N3	C4	N4	HN4A	180.0°	180.0°
N3	C4	C5	C6	0.2°	0.0°
N3	C4	C5	H5	179.8°	180.0°
C4	N4	HN4	HN4A	180.0°	180.0°
N4	C4	C5	C6	179.9°	180.0°
N4	C4	C5	H5	0.1°	0.0°
C5	C4	N4	HN4	179.9°	180.0°
C5	C4	N4	HN4A	0.1°	0.0°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	H6	179.7°	179.9°
H5	C5	C6	H6	0.3°	0.0°
C2'	C1'	O4'	H1'	118.3°	119.4°
C1'	C2'	C3'	H2'	120.0°	118.7°
C1'	C2'	C3'	H2'A	120.0°	118.6°
C1'	C2'	H2'	H2'A	123.0°	122.6°
C1'	C2'	C3'	O3'	76.6°	139.1°
C1'	C2'	C3'	C4'	35.1°	20.9°
C1'	C2'	C3'	H3'	161.4°	97.3°
C2'	C1'	O4'	C4'	26.5°	26.5°
O4'	C1'	C2'	C3'	38.3°	2.0°
O4'	C1'	C2'	H2'	158.3°	120.7°
O4'	C1'	C2'	H2'A	81.7°	116.7°
C1'	O4'	C4'	C3'	3.9°	40.1°
C1'	O4'	C4'	C5'	123.9°	158.6°
C1'	O4'	C4'	H4'	117.3°	78.4°
H1'	C1'	C2'	C3'	88.2°	117.6°
H1'	C1'	C2'	H2'	31.7°	1.2°
H1'	C1'	C2'	H2'A	151.8°	123.8°
H1'	C1'	O4'	C4'	91.7°	92.9°
C3'	C2'	H2'	H2'A	123.0°	122.6°
C2'	C3'	O3'	C4'	110.7°	112.7°
C2'	C3'	O3'	H3'	122.8°	123.7°
C2'	C3'	C4'	H3'	121.6°	118.3°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	O4'	20.0°	37.1°
C2'	C3'	C4'	C5'	100.4°	155.6°
C2'	C3'	C4'	H4'	140.7°	81.4°
H2'	C2'	C3'	O3'	43.5°	20.3°
H2'	C2'	C3'	C4'	155.1°	97.8°
H2'	C2'	C3'	H3'	78.5°	143.9°
H2'A	C2'	C3'	O3'	163.4°	102.3°
H2'A	C2'	C3'	C4'	84.9°	139.5°
H2'A	C2'	C3'	H3'	41.4°	21.3°
O3'	C3'	C4'	H3'	121.0°	123.6°
O3'	C3'	C4'	O4'	97.3°	155.2°
O3'	C3'	C4'	C5'	142.2°	86.3°
O3'	C3'	C4'	H4'	23.4°	36.7°
C4'	C3'	O3'	HO3'	69.2°	174.1°
C3'	C4'	O4'	C5'	119.9°	118.5°
C3'	C4'	O4'	H4'	121.2°	118.5°
C3'	C4'	C5'	H4'	121.3°	123.0°
C3'	C4'	C5'	O5'	51.5°	175.0°
C3'	C4'	C5'	H5'	171.5°	55.0°
C3'	C4'	C5'	H5'A	68.5°	65.0°
H3'	C3'	O3'	HO3'	57.2°	62.2°
H3'	C3'	C4'	O4'	141.7°	81.2°
H3'	C3'	C4'	C5'	21.2°	37.3°
H3'	C3'	C4'	H4'	97.6°	160.3°
O4'	C4'	C5'	H4'	120.7°	122.9°
O4'	C4'	C5'	O5'	66.5°	70.9°
O4'	C4'	C5'	H5'	53.5°	169.0°
O4'	C4'	C5'	H5'A	173.5°	49.1°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.0°
C4'	C5'	H5'	H5'A	119.3°	120.0°
H4'	C4'	C5'	O5'	172.8°	52.0°
H4'	C4'	C5'	H5'	67.2°	68.0°
H4'	C4'	C5'	H5'A	52.8°	172.0°
N4'	C7'	C8'	H7'	120.0°	120.0°
N4'	C7'	C8'	H7'A	120.0°	120.0°
N4'	C7'	H7'	H7'A	120.5°	120.0°
N4'	C7'	C8'	H8'	44.8°	60.1°
N4'	C7'	C8'	H8'A	75.2°	60.0°
C7'	N4'	P	OP3	10.1°	60.0°
HN4'	N4'	C7'	C8'	119.6°	11.0°
HN4'	N4'	C7'	H7'	120.5°	131.0°
HN4'	N4'	C7'	H7'A	0.4°	109.0°
HN4'	N4'	P	OP3	130.1°	64.0°
O5'	C5'	H5'	H5'A	119.3°	120.0°
C5'	O5'	P	OP3	62.7°	165.0°
C8'	C7'	H7'	H7'A	120.5°	120.0°
C7'	C8'	H8'	H8'A	118.7°	120.1°
H7'	C7'	C8'	H8'	75.2°	59.9°
H7'	C7'	C8'	H8'A	164.8°	180.0°
H7'A	C7'	C8'	H8'	164.8°	179.9°
H7'A	C7'	C8'	H8'A	44.8°	60.0°

Definition date:	2009-10-01
Last modified:	2012-01-06
Release status:	REL
Processing site:	RCSB
Derived from:	3JY2