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CV1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2doub1.32Å1.41ÅAromatic
N1C6sing1.33Å1.41ÅAromatic
N1C1Dsing1.46Å1.50Å
BR1C8sing1.89Å1.90Å
C2N3sing1.32Å1.32ÅAromatic
N3C4doub1.32Å1.35ÅAromatic
C4C5sing1.41Å1.39ÅAromatic
C4N9sing1.38Å1.33ÅAromatic
C5C6doub1.41Å1.39ÅAromatic
C5N7sing1.35Å1.33ÅAromatic
C6N6sing1.38Å1.32Å
N7C8doub1.31Å1.33ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
N9C1'sing1.46Å1.52Å
PAO1Adoub1.48Å1.48Å
PAO2Asing1.61Å1.48Å
PAO3Asing1.61Å1.63Å
PAO5'sing1.61Å1.66Å
PBO1Bsing1.61Å1.48Å
PBO2Bdoub1.48Å1.47Å
PBO3Asing1.61Å1.64Å
PBO5Dsing1.61Å1.63Å
C1'C2'sing1.54Å1.54Å
C1'O4'sing1.43Å1.50Å
C1DC2Dsing1.54Å1.55Å
C1DO4Dsing1.43Å1.45Å
C2'O2'sing1.43Å1.45Å
C2'C3'sing1.54Å1.55Å
C2DO2Dsing1.43Å1.44Å
C2DC3Dsing1.55Å1.53Å
C3'O3'sing1.43Å1.44Å
C3'C4'sing1.54Å1.55Å
C3DO3Dsing1.43Å1.43Å
C3DC4Dsing1.54Å1.54Å
C4'O4'sing1.43Å1.48Å
C4'C5'sing1.53Å1.58Å
C4DO4Dsing1.42Å1.46Å
C4DC5Dsing1.53Å1.56Å
C5'O5'sing1.43Å1.47Å
C5DO5Dsing1.42Å1.45Å
C2H2sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C1'H1'sing1.09Å1.10Å
C1DH1Dsing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C2DH2Dsing1.09Å1.10Å
O2DHO2Dsing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C3DH3Dsing1.09Å1.10Å
O3DHO3Dsing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C4DH4Dsing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C5DH5Dsing1.09Å1.10Å
C5DH5DAsing1.09Å1.10Å
O2AH2Asing0.97Å0.95Å
O1BH1Bsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6117.5°120.3°
C2N1C1D120.7°118.8°
N1C2N3121.2°122.0°
N1C2H2119.4°119.0°
C6N1C1D121.8°120.4°
N1C6C5119.7°118.7°
N1C6N6121.9°120.7°
N1C1DC2D112.7°111.0°
N1C1DO4D112.3°108.0°
N1C1DH1D104.1°110.3°
BR1C8N7121.6°125.4°
BR1C8N9127.5°125.4°
C2N3C4122.2°121.6°
N3C2H2119.4°119.0°
N3C4C5120.1°118.2°
N3C4N9132.6°136.1°
C5C4N9107.4°105.5°
C4C5C6119.4°118.2°
C4C5N7108.2°106.2°
C4N9C8106.6°107.0°
C4N9C1'125.1°124.5°
C6C5N7132.4°135.7°
C5C6N6118.4°120.7°
C5N7C8107.0°110.2°
C6N6HN6120.0°120.0°
C6N6HN6A120.0°120.0°
N7C8N9110.8°109.2°
C8N9C1'128.2°128.3°
N9C1'C2'117.2°110.7°
N9C1'O4'105.3°108.3°
N9C1'H1'106.6°109.6°
O1APAO2A118.8°109.5°
O1APAO3A109.5°109.5°
O1APAO5'109.7°109.5°
O2APAO3A109.0°109.6°
O2APAO5'106.5°109.5°
PAO2AH2A109.5°114.0°
O3APAO5'102.1°109.1°
PAO3APB125.5°134.3°
PAO5'C5'123.8°123.0°
O1BPBO2B118.6°109.5°
O1BPBO3A110.6°109.4°
O1BPBO5D110.2°109.5°
PBO1BH1B109.5°114.0°
O2BPBO3A105.1°109.4°
O2BPBO5D108.6°109.3°
O3APBO5D102.4°109.6°
PBO5DC5D123.1°122.5°
C2'C1'O4'107.5°107.3°
C1'C2'O2'109.5°110.4°
C1'C2'C3'106.0°104.6°
C2'C1'H1'104.3°110.2°
C1'C2'H2'112.8°110.4°
C1'O4'C4'110.8°109.3°
O4'C1'H1'116.4°110.7°
C2DC1DO4D105.7°107.8°
C1DC2DO2D110.7°110.8°
C1DC2DC3D106.2°102.7°
C2DC1DH1D110.8°110.0°
C1DC2DH2D111.1°110.8°
C1DO4DC4D110.6°110.7°
O4DC1DH1D111.3°109.7°
O2'C2'C3'112.5°110.4°
O2'C2'H2'106.4°110.4°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'111.5°110.3°
C2'C3'C4'107.0°105.3°
C3'C2'H2'109.9°110.5°
C2'C3'H3'109.7°110.4°
O2DC2DC3D110.5°110.8°
O2DC2DH2D107.0°110.7°
C2DO2DHO2D109.5°114.0°
C2DC3DO3D110.7°110.6°
C2DC3DC4D106.0°103.8°
C3DC2DH2D111.4°110.8°
C2DC3DH3D111.1°110.6°
O3'C3'C4'109.2°110.3°
O3'C3'H3'107.6°110.3°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'106.4°107.7°
C3'C4'C5'114.1°109.6°
C4'C3'H3'111.9°110.2°
C3'C4'H4'109.7°110.7°
O3DC3DC4D109.6°110.6°
O3DC3DH3D107.5°110.5°
C3DO3DHO3D109.5°113.9°
C3DC4DO4D107.1°108.3°
C3DC4DC5D113.0°109.2°
C4DC3DH3D112.1°110.6°
C3DC4DH4D109.7°109.0°
O4'C4'C5'112.7°110.9°
O4'C4'H4'111.1°108.6°
C4'C5'O5'114.0°109.3°
C5'C4'H4'102.9°109.3°
C4'C5'H5'108.0°109.5°
C4'C5'H5'A108.0°109.5°
O4DC4DC5D112.3°111.2°
O4DC4DH4D110.5°109.9°
C4DC5DO5D114.1°110.9°
C5DC4DH4D104.3°109.1°
C4DC5DH5D108.0°109.2°
C4DC5DH5DA108.0°109.2°
O5'C5'H5'108.0°109.5°
O5'C5'H5'A108.0°109.5°
O5DC5DH5D107.9°109.2°
O5DC5DH5DA107.9°109.2°
HN6N6HN6A120.0°120.0°
H5'C5'H5'A110.9°109.5°
H5DC5DH5DA110.9°109.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2N1C6C1D179.5°170.8°
N1C2N3H2180.0°179.9°
N1C2N3C40.1°1.6°
C2N1C6C50.3°9.1°
C2N1C6N6179.9°170.9°
C2N1C1DC2D115.8°54.7°
C2N1C1DO4D3.5°63.3°
C2N1C1DH1D124.0°176.8°
C6N1C2N30.2°10.2°
N1C6C5C40.1°0.2°
N1C6C5N6179.6°179.9°
N1C6C5N7179.6°179.7°
C6N1C1DC2D63.8°134.4°
C6N1C1DO4D176.9°107.7°
C6N1C2H2179.8°169.8°
N1C6N6HN6179.7°0.0°
N1C6N6HN6A0.4°180.0°
C6N1C1DH1D56.4°12.2°
C1DN1C2N3179.4°160.7°
C1DN1C6C5179.3°161.7°
C1DN1C6N60.4°18.3°
N1C1DC2DO4D123.0°118.1°
N1C1DC2DH1D116.2°122.3°
N1C1DO4DH1D116.3°120.2°
N1C1DC2DO2D134.5°98.9°
N1C1DC2DC3D105.5°142.8°
N1C1DO4DC4D101.3°135.0°
C1DN1C2H20.6°19.2°
N1C1DC2DH2D15.8°24.4°
BR1C8N9C4180.0°170.1°
BR1C8N7C5179.8°178.6°
BR1C8N7N9179.6°180.0°
BR1C8N9C1'2.1°13.9°
C2N3C4C50.3°7.3°
C2N3C4N9179.9°165.8°
N3C4C5N9179.6°175.1°
N3C4C5C60.2°7.9°
N3C4C5N7180.0°171.7°
N3C4N9C8179.9°172.2°
N3C4N9C1'2.0°11.6°
C4N3C2H2179.9°178.4°
C4C5C6N7179.7°179.5°
C4C5C6N6179.7°179.8°
C4C5N7C80.1°7.5°
C5C4N9C80.5°14.1°
C5C4N9C1'178.5°162.1°
N9C4C5C6179.9°167.2°
N9C4C5N70.4°13.2°
C4N9C8N70.4°9.9°
C4N9C8C1'177.9°176.0°
C4N9C1'C2'46.8°164.9°
C4N9C1'O4'72.6°47.5°
C4N9C1'H1'163.2°73.4°
C6C5N7C8179.8°173.0°
C5C6N6HN60.0°180.0°
C5C6N6HN6A180.0°0.1°
N7C5C6N60.0°0.3°
C5N7C8N90.2°1.4°
C6N6HN6HN6A180.0°180.0°
N7C8N9C1'178.3°166.1°
C8N9C1'C2'135.6°10.5°
C8N9C1'O4'105.0°127.9°
C8N9C1'H1'19.3°111.2°
N9C1'C2'O4'118.2°118.0°
N9C1'C2'H1'117.6°121.4°
N9C1'O4'H1'117.8°120.2°
N9C1'C2'O2'116.0°105.0°
N9C1'C2'C3'122.5°136.2°
N9C1'O4'C4'120.1°144.9°
N9C1'C2'H2'2.2°17.3°
O1APAO2AO3A126.2°120.2°
O1APAO2AO5'124.3°120.1°
O1APAO3AO5'116.2°119.9°
O1APAO3APB40.9°7.2°
O1APAO5'C5'48.0°60.3°
O1APAO2AH2A0.0°60.0°
O2APAO3AO5'112.4°119.9°
O2APAO3APB90.5°127.4°
O2APAO5'C5'177.7°59.9°
PAO3APBO1B15.0°9.9°
PAO3APBO2B144.1°110.1°
PAO3APBO5D102.5°130.0°
O3APAO5'C5'68.0°179.8°
O3APAO2AH2A126.2°60.2°
O5'PAO3APB157.0°112.7°
PAO5'C5'C4'167.1°77.9°
PAO5'C5'H5'47.1°42.0°
PAO5'C5'H5'A72.9°162.1°
O5'PAO2AH2A124.3°179.8°
O1BPBO2BO3A124.2°120.0°
O1BPBO2BO5D126.8°120.0°
O1BPBO3AO5D117.4°120.1°
O1BPBO5DC5D16.0°57.8°
O2BPBO3AO5D113.4°119.9°
O2BPBO5DC5D147.4°62.2°
O2BPBO1BH1B0.0°60.0°
O3APBO5DC5D101.8°177.8°
O3APBO1BH1B121.5°60.0°
PBO5DC5DC4D147.5°158.4°
PBO5DC5DH5D27.5°81.2°
PBO5DC5DH5DA92.5°38.1°
O5DPBO1BH1B126.0°179.9°
C2'C1'O4'H1'116.5°120.3°
C1'C2'O2'C3'117.6°115.2°
C1'C2'O2'H2'122.1°122.3°
C1'C2'C3'H2'122.1°118.8°
C1'C2'C3'O3'107.3°113.8°
C1'C2'C3'C4'12.0°5.2°
C2'C1'O4'C4'5.6°25.4°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'H3'133.6°124.1°
O4'C1'C2'O2'125.8°137.0°
O4'C1'C2'C3'4.3°18.2°
C1'O4'C4'C3'13.1°21.9°
C1'O4'C4'C5'112.6°141.8°
O4'C1'C2'H2'116.0°100.7°
C1'O4'C4'H4'132.4°98.1°
C2DC1DO4DH1D120.4°119.7°
C1DC2DO2DC3D117.4°113.3°
C1DC2DO2DH2D121.2°123.3°
C1DC2DC3DH2D121.1°118.4°
C1DC2DC3DO3D125.9°94.2°
C1DC2DC3DC4D7.2°24.4°
C2DC1DO4DC4D22.0°15.0°
C1DC2DO2DHO2D180.0°180.0°
C1DC2DC3DH3D114.8°143.1°
O4DC1DC2DO2D102.4°143.0°
O4DC1DC2DC3D17.5°24.6°
C1DO4DC4DC3D17.6°1.5°
C1DO4DC4DC5D107.0°118.6°
O4DC1DC2DH2D138.9°93.8°
C1DO4DC4DH4D137.1°120.5°
O2'C2'C3'H2'118.3°122.4°
O2'C2'C3'O3'12.3°5.0°
O2'C2'C3'C4'131.6°124.0°
O2'C2'C1'H1'1.6°16.4°
O2'C2'C3'H3'106.7°117.1°
C2'C3'O3'C4'118.1°115.9°
C2'C3'O3'H3'120.3°122.2°
C2'C3'C4'H3'120.2°119.0°
C2'C3'C4'O4'15.4°9.5°
C2'C3'C4'C5'109.5°130.3°
C3'C2'C1'H1'119.9°102.4°
C3'C2'O2'HO2'62.4°64.8°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'H4'135.6°109.1°
O2DC2DC3DH2D118.7°123.3°
O2DC2DC3DO3D5.8°24.1°
O2DC2DC3DC4D112.9°142.7°
O2DC2DC1DH1D18.3°23.4°
O2DC2DC3DH3D125.1°98.6°
C2DC3DO3DC4D116.5°114.4°
C2DC3DO3DH3D121.4°122.8°
C2DC3DC4DH3D121.3°118.6°
C2DC3DC4DO4D5.7°16.9°
C2DC3DC4DC5D118.5°104.4°
C3DC2DC1DH1D138.3°94.9°
C3DC2DO2DHO2D62.6°66.7°
C2DC3DO3DHO3D180.0°61.5°
C2DC3DC4DH4D125.6°136.5°
O3'C3'C4'H3'119.0°122.0°
O3'C3'C4'O4'105.4°128.5°
O3'C3'C4'C5'129.7°110.8°
O3'C3'C2'H2'130.6°127.4°
O3'C3'C4'H4'14.8°9.9°
C3'C4'O4'C5'125.7°119.9°
C3'C4'O4'H4'119.3°120.0°
C3'C4'C5'H4'118.8°121.5°
C3'C4'C5'O5'76.0°151.7°
C4'C3'C2'H2'110.1°113.6°
C4'C3'O3'HO3'62.0°177.3°
C3'C4'C5'H5'44.0°88.3°
C3'C4'C5'H5'A163.9°31.8°
O3DC3DC4DH3D119.3°122.7°
O3DC3DC4DO4D113.8°101.7°
O3DC3DC4DC5D122.1°137.0°
O3DC3DC2DH2D112.9°147.4°
O3DC3DC4DH4D6.2°17.9°
C3DC4DO4DC5D124.6°120.1°
C3DC4DO4DH4D119.5°119.0°
C3DC4DC5DH4D119.1°119.1°
C3DC4DC5DO5D157.1°155.6°
C4DC3DC2DH2D128.3°93.9°
C4DC3DO3DHO3D63.5°175.9°
C3DC4DC5DH5D82.9°84.0°
C3DC4DC5DH5DA37.1°35.3°
O4'C4'C5'H4'119.8°119.7°
O4'C4'C5'O5'162.5°33.0°
C4'O4'C1'H1'122.1°94.9°
O4'C4'C3'H3'135.6°109.5°
O4'C4'C5'H5'77.5°153.0°
O4'C4'C5'H5'A42.5°87.0°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C5'C4'C3'H3'10.7°11.3°
C4'C5'H5'H5'A118.1°120.1°
O4DC4DC5DH4D119.6°121.4°
O4DC4DC5DO5D35.8°36.1°
C4DO4DC1DH1D142.4°104.8°
O4DC4DC3DH3D127.0°135.6°
O4DC4DC5DH5D155.8°156.5°
O4DC4DC5DH5DA84.2°84.2°
C4DC5DO5DH5D120.0°120.4°
C4DC5DO5DH5DA120.0°120.3°
C5DC4DC3DH3D2.8°14.2°
C4DC5DH5DH5DA118.1°119.3°
O5'C5'C4'H4'42.7°86.7°
O5'C5'H5'H5'A118.1°120.0°
O5DC5DC4DH4D83.8°85.3°
O5DC5DH5DH5DA118.1°119.3°
H1'C1'C2'H2'119.8°138.7°
H1DC1DC2DH2D100.4°146.7°
H2'C2'O2'HO2'57.9°57.7°
H2'C2'C3'H3'11.5°5.3°
H2DC2DO2DHO2D58.8°56.7°
H2DC2DC3DH3D6.4°24.7°
H3'C3'O3'HO3'59.7°60.7°
H3'C3'C4'H4'104.2°131.9°
H3DC3DO3DHO3D58.6°61.3°
H3DC3DC4DH4D113.1°104.8°
H4'C4'C5'H5'162.7°33.2°
H4'C4'C5'H5'A77.3°153.3°
H4DC4DC5DH5D36.2°35.1°
H4DC4DC5DH5DA156.2°154.3°

223532

PDB entries from 2024-08-07

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