CU0
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| O2' | C2' | sing | 1.43Å | 1.43Å | |
| C2' | C3' | sing | 1.55Å | 1.54Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| O1A | PA | doub | 1.48Å | 1.48Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| PA | O5' | sing | 1.61Å | 1.60Å | |
| PA | O2A | sing | 1.61Å | 1.53Å | |
| PA | O3A | sing | 1.61Å | 1.59Å | |
| O5' | C5' | sing | 1.43Å | 1.45Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| O3A | PB | sing | 1.61Å | 1.59Å | |
| O1B | PB | sing | 1.61Å | 1.47Å | |
| PB | O3B | doub | 1.48Å | 1.51Å | |
| PB | O2B | sing | 1.61Å | 1.52Å | |
| O2B | H1 | sing | 0.97Å | 0.95Å | |
| O2A | H3 | sing | 0.97Å | 0.95Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C4' | H6 | sing | 1.09Å | 1.10Å | |
| C3' | H7 | sing | 1.09Å | 1.10Å | |
| O3' | H8 | sing | 0.97Å | 0.95Å | |
| C2' | H9 | sing | 1.09Å | 1.10Å | |
| O2' | H10 | sing | 0.97Å | 0.95Å | |
| C1' | H11 | sing | 1.09Å | 1.10Å | |
| C1' | H12 | sing | 1.09Å | 1.10Å | |
| O1B | H13 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C2' | 112.3° | 110.6° |
| O3' | C3' | C4' | 112.5° | 110.5° |
| O3' | C3' | H7 | 110.4° | 110.4° |
| C3' | O3' | H8 | 109.5° | 114.1° |
| O2' | C2' | C3' | 111.9° | 110.9° |
| O2' | C2' | C1' | 111.3° | 110.9° |
| O2' | C2' | H9 | 111.4° | 110.8° |
| C2' | O2' | H10 | 109.5° | 114.0° |
| C3' | C2' | C1' | 102.1° | 102.1° |
| C2' | C3' | C4' | 103.5° | 104.2° |
| C2' | C3' | H7 | 108.9° | 110.5° |
| C3' | C2' | H9 | 109.8° | 110.9° |
| C2' | C1' | O4' | 106.0° | 103.5° |
| C1' | C2' | H9 | 110.0° | 110.9° |
| C2' | C1' | H11 | 110.3° | 110.6° |
| C2' | C1' | H12 | 110.3° | 110.6° |
| O1A | PA | O5' | 108.8° | 109.5° |
| O1A | PA | O2A | 110.5° | 109.4° |
| O1A | PA | O3A | 110.6° | 109.5° |
| C3' | C4' | O4' | 106.7° | 107.3° |
| C3' | C4' | C5' | 117.1° | 109.9° |
| C3' | C4' | H6 | 106.9° | 110.0° |
| C4' | C3' | H7 | 109.0° | 110.5° |
| C1' | O4' | C4' | 110.2° | 107.0° |
| O4' | C1' | H11 | 110.3° | 110.6° |
| O4' | C1' | H12 | 110.3° | 110.7° |
| O5' | PA | O2A | 109.0° | 109.5° |
| O5' | PA | O3A | 109.3° | 109.5° |
| PA | O5' | C5' | 125.5° | 123.0° |
| O2A | PA | O3A | 108.7° | 109.5° |
| PA | O2A | H3 | 109.5° | 114.0° |
| PA | O3A | PB | 132.2° | 134.0° |
| O5' | C5' | C4' | 110.3° | 109.4° |
| O5' | C5' | H4 | 109.2° | 109.5° |
| O5' | C5' | H5 | 109.3° | 109.5° |
| O4' | C4' | C5' | 110.7° | 109.9° |
| O4' | C4' | H6 | 107.9° | 109.9° |
| C4' | C5' | H4 | 109.3° | 109.5° |
| C4' | C5' | H5 | 109.3° | 109.4° |
| C5' | C4' | H6 | 107.1° | 109.9° |
| O3A | PB | O1B | 109.2° | 109.4° |
| O3A | PB | O3B | 107.9° | 109.5° |
| O3A | PB | O2B | 106.6° | 109.5° |
| O1B | PB | O3B | 111.8° | 109.5° |
| O1B | PB | O2B | 113.0° | 109.4° |
| PB | O1B | H13 | 109.5° | 114.0° |
| O3B | PB | O2B | 108.1° | 109.5° |
| PB | O2B | H1 | 109.5° | 114.0° |
| H4 | C5' | H5 | 109.5° | 109.5° |
| H11 | C1' | H12 | 109.5° | 110.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C2' | O2' | 32.5° | 20.4° |
| O3' | C3' | C2' | C4' | 121.5° | 118.7° |
| O3' | C3' | C2' | H7 | 122.6° | 122.6° |
| O3' | C3' | C2' | C1' | 151.6° | 97.9° |
| O3' | C3' | C4' | H7 | 122.8° | 122.5° |
| O3' | C3' | C4' | O4' | 138.4° | 120.9° |
| O3' | C3' | C4' | C5' | 96.9° | 119.8° |
| O3' | C3' | C4' | H6 | 23.1° | 1.4° |
| O3' | C3' | C2' | H9 | 91.7° | 143.9° |
| O2' | C2' | C3' | C1' | 119.1° | 118.2° |
| O2' | C2' | C3' | H9 | 124.3° | 123.6° |
| O2' | C2' | C1' | H9 | 124.0° | 123.6° |
| O2' | C2' | C3' | C4' | 89.0° | 139.1° |
| O2' | C2' | C1' | O4' | 85.7° | 155.2° |
| O2' | C2' | C3' | H7 | 155.2° | 102.2° |
| O2' | C2' | C1' | H11 | 154.9° | 36.7° |
| O2' | C2' | C1' | H12 | 33.7° | 86.3° |
| C3' | C2' | C1' | H9 | 116.5° | 118.2° |
| C2' | C3' | C4' | H7 | 115.8° | 118.7° |
| C3' | C2' | C1' | O4' | 33.8° | 37.0° |
| C2' | C3' | C4' | O4' | 17.0° | 2.0° |
| C2' | C3' | C4' | C5' | 141.7° | 121.4° |
| C2' | C3' | C4' | H6 | 98.3° | 117.4° |
| C2' | C3' | O3' | H8 | 180.0° | 65.2° |
| C3' | C2' | O2' | H10 | 180.0° | 180.0° |
| C3' | C2' | C1' | H11 | 85.6° | 81.5° |
| C3' | C2' | C1' | H12 | 153.2° | 155.6° |
| C1' | C2' | C3' | C4' | 30.1° | 20.9° |
| C2' | C1' | O4' | H11 | 119.4° | 118.5° |
| C2' | C1' | O4' | H12 | 119.4° | 118.5° |
| C2' | C1' | O4' | C4' | 24.3° | 40.1° |
| C1' | C2' | C3' | H7 | 85.7° | 139.6° |
| C1' | C2' | O2' | H10 | 66.5° | 67.3° |
| C2' | C1' | H11 | H12 | 121.6° | 122.9° |
| O1A | PA | O5' | O2A | 120.6° | 120.0° |
| O1A | PA | O5' | O3A | 120.8° | 120.0° |
| O1A | PA | O2A | O3A | 121.5° | 120.0° |
| O1A | PA | O5' | C5' | 146.7° | 55.0° |
| O1A | PA | O3A | PB | 111.2° | 45.0° |
| O1A | PA | O2A | H3 | 0.0° | 180.0° |
| C3' | C4' | O4' | C1' | 4.4° | 26.5° |
| C3' | C4' | C5' | O5' | 6.9° | 175.7° |
| C3' | C4' | O4' | C5' | 128.5° | 119.4° |
| C3' | C4' | O4' | H6 | 114.6° | 119.5° |
| C3' | C4' | C5' | H6 | 119.9° | 121.2° |
| C3' | C4' | C5' | H4 | 127.0° | 64.2° |
| C3' | C4' | C5' | H5 | 113.3° | 55.8° |
| C4' | C3' | O3' | H8 | 63.8° | 180.0° |
| C4' | C3' | C2' | H9 | 146.7° | 97.3° |
| C1' | O4' | C4' | C5' | 124.1° | 145.9° |
| C1' | O4' | C4' | H6 | 119.0° | 93.0° |
| O4' | C1' | C2' | H9 | 150.3° | 81.2° |
| O4' | C1' | H11 | H12 | 121.6° | 123.0° |
| O5' | PA | O2A | O3A | 119.0° | 120.0° |
| PA | O5' | C5' | C4' | 105.7° | 180.0° |
| O5' | PA | O3A | PB | 8.5° | 165.0° |
| O5' | PA | O2A | H3 | 119.5° | 60.0° |
| PA | O5' | C5' | H4 | 134.2° | 60.0° |
| PA | O5' | C5' | H5 | 14.4° | 60.1° |
| O2A | PA | O5' | C5' | 26.1° | 65.0° |
| O2A | PA | O3A | PB | 127.3° | 75.0° |
| O3A | PA | O5' | C5' | 92.5° | 175.0° |
| PA | O3A | PB | O1B | 105.2° | 160.0° |
| PA | O3A | PB | O3B | 16.6° | 40.0° |
| PA | O3A | PB | O2B | 132.4° | 80.0° |
| O3A | PA | O2A | H3 | 121.5° | 60.0° |
| O5' | C5' | C4' | O4' | 129.5° | 66.5° |
| O5' | C5' | C4' | H4 | 120.1° | 120.1° |
| O5' | C5' | C4' | H5 | 120.1° | 119.9° |
| O5' | C5' | H4 | H5 | 119.6° | 120.0° |
| O5' | C5' | C4' | H6 | 113.0° | 54.5° |
| O4' | C4' | C5' | H6 | 117.5° | 121.0° |
| O4' | C4' | C5' | H4 | 110.4° | 53.6° |
| O4' | C4' | C5' | H5 | 9.4° | 173.6° |
| O4' | C4' | C3' | H7 | 98.8° | 116.6° |
| C4' | O4' | C1' | H11 | 95.1° | 78.4° |
| C4' | O4' | C1' | H12 | 143.7° | 158.6° |
| C4' | C5' | H4 | H5 | 119.6° | 120.0° |
| C5' | C4' | C3' | H7 | 25.9° | 2.8° |
| O3A | PB | O1B | O3B | 119.4° | 120.0° |
| O3A | PB | O1B | O2B | 118.4° | 120.0° |
| O3A | PB | O3B | O2B | 114.9° | 120.1° |
| O3A | PB | O2B | H1 | 115.8° | 59.9° |
| O3A | PB | O1B | H13 | 119.4° | 180.0° |
| O1B | PB | O3B | O2B | 125.0° | 120.0° |
| O1B | PB | O2B | H1 | 124.3° | 60.0° |
| O3B | PB | O2B | H1 | 0.0° | 180.0° |
| O3B | PB | O1B | H13 | 0.0° | 60.0° |
| O2B | PB | O1B | H13 | 122.2° | 59.9° |
| H4 | C5' | C4' | H6 | 7.1° | 174.6° |
| H5 | C5' | C4' | H6 | 126.8° | 65.4° |
| H6 | C4' | C3' | H7 | 145.9° | 123.9° |
| H7 | C3' | O3' | H8 | 58.2° | 57.4° |
| H7 | C3' | C2' | H9 | 30.9° | 21.4° |
| H9 | C2' | O2' | H10 | 56.7° | 56.4° |
| H9 | C2' | C1' | H11 | 30.9° | 160.3° |
| H9 | C2' | C1' | H12 | 90.3° | 37.4° |
