CTN
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O5' | C5' | sing | 1.43Å | 1.41Å | |
O5' | H5' | sing | 0.97Å | 0.95Å | |
C5' | C4' | sing | 1.53Å | 1.48Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
C4' | O4' | sing | 1.44Å | 1.44Å | |
C4' | C3' | sing | 1.54Å | 1.54Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
O4' | C1' | sing | 1.44Å | 1.40Å | |
C1' | N1 | sing | 1.46Å | 1.50Å | |
C1' | C2' | sing | 1.55Å | 1.51Å | |
C1' | H1' | sing | 1.09Å | 1.11Å | |
N1 | C6 | sing | 1.36Å | 1.41Å | Aromatic |
N1 | C2 | sing | 1.35Å | 1.40Å | Aromatic |
C6 | C5 | doub | 1.35Å | 1.40Å | Aromatic |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C5 | C4 | sing | 1.41Å | 1.41Å | Aromatic |
C5 | H5 | sing | 1.08Å | 1.10Å | |
C4 | N3 | doub | 1.33Å | 1.39Å | Aromatic |
C4 | N4 | sing | 1.38Å | 1.34Å | |
N3 | C2 | sing | 1.33Å | 1.35Å | Aromatic |
C2 | O2 | doub | 1.22Å | 1.25Å | |
N4 | HN41 | sing | 0.97Å | 1.02Å | |
N4 | HN42 | sing | 0.97Å | 1.02Å | |
C2' | O2' | sing | 1.43Å | 1.43Å | |
C2' | C3' | sing | 1.55Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.11Å | |
O2' | H1 | sing | 0.97Å | 0.95Å | |
C3' | O3' | sing | 1.43Å | 1.42Å | |
C3' | H3' | sing | 1.09Å | 1.11Å | |
O3' | H2 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C5' | O5' | H5' | 111.7° | 106.8° |
O5' | C5' | C4' | 111.7° | 109.5° |
O5' | C5' | H5'1 | 111.4° | 109.5° |
O5' | C5' | H5'2 | 111.4° | 109.5° |
C4' | C5' | H5'1 | 111.4° | 109.4° |
C4' | C5' | H5'2 | 111.4° | 109.4° |
C5' | C4' | O4' | 114.6° | 110.4° |
C5' | C4' | C3' | 104.1° | 110.5° |
C5' | C4' | H4' | 107.6° | 110.3° |
H5'1 | C5' | H5'2 | 99.0° | 109.4° |
O4' | C4' | C3' | 102.1° | 104.8° |
O4' | C4' | H4' | 109.4° | 110.4° |
C4' | O4' | C1' | 108.4° | 105.3° |
C3' | C4' | H4' | 119.2° | 110.3° |
C4' | C3' | C2' | 105.9° | 104.1° |
C4' | C3' | O3' | 105.4° | 110.5° |
C4' | C3' | H3' | 115.8° | 110.6° |
O4' | C1' | N1 | 111.8° | 110.4° |
O4' | C1' | C2' | 105.3° | 104.9° |
O4' | C1' | H1' | 112.0° | 110.3° |
N1 | C1' | C2' | 113.0° | 110.4° |
N1 | C1' | H1' | 104.2° | 110.4° |
C1' | N1 | C6 | 122.9° | 119.8° |
C1' | N1 | C2 | 120.3° | 119.9° |
C2' | C1' | H1' | 110.8° | 110.3° |
C1' | C2' | O2' | 110.4° | 110.8° |
C1' | C2' | C3' | 103.6° | 103.9° |
C1' | C2' | H2' | 115.2° | 110.4° |
C6 | N1 | C2 | 116.8° | 120.3° |
N1 | C6 | C5 | 123.5° | 119.3° |
N1 | C6 | H6 | 118.6° | 120.3° |
N1 | C2 | N3 | 121.4° | 121.1° |
N1 | C2 | O2 | 122.7° | 119.4° |
C5 | C6 | H6 | 117.9° | 120.4° |
C6 | C5 | C4 | 116.0° | 119.0° |
C6 | C5 | H5 | 121.7° | 120.5° |
C4 | C5 | H5 | 122.2° | 120.5° |
C5 | C4 | N3 | 121.2° | 119.6° |
C5 | C4 | N4 | 121.4° | 120.2° |
N3 | C4 | N4 | 117.4° | 120.2° |
C4 | N3 | C2 | 121.0° | 120.7° |
C4 | N4 | HN41 | 108.0° | 120.0° |
C4 | N4 | HN42 | 121.3° | 120.0° |
N3 | C2 | O2 | 115.9° | 119.4° |
HN41 | N4 | HN42 | 108.0° | 120.0° |
O2' | C2' | C3' | 116.0° | 110.5° |
O2' | C2' | H2' | 102.6° | 110.5° |
C2' | O2' | H1 | 110.4° | 106.8° |
C3' | C2' | H2' | 109.5° | 110.5° |
C2' | C3' | O3' | 113.5° | 110.5° |
C2' | C3' | H3' | 107.9° | 110.5° |
O3' | C3' | H3' | 108.5° | 110.4° |
C3' | O3' | H2 | 105.4° | 106.8° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
O5' | C5' | C4' | H5'2 | 125.3° | 120.0° |
O5' | C5' | H5'1 | H5'2 | 117.3° | 120.1° |
O5' | C5' | C4' | O4' | 49.0° | 66.4° |
O5' | C5' | C4' | C3' | 159.6° | 178.1° |
O5' | C5' | C4' | H4' | 73.0° | 55.8° |
H5' | O5' | C5' | C4' | 180.0° | 180.0° |
H5' | O5' | C5' | H5'1 | 54.8° | 60.0° |
H5' | O5' | C5' | H5'2 | 54.7° | 60.1° |
C4' | C5' | H5'1 | H5'2 | 117.3° | 119.9° |
C5' | C4' | O4' | C3' | 111.8° | 118.9° |
C5' | C4' | O4' | H4' | 121.0° | 122.2° |
C5' | C4' | C3' | H4' | 119.8° | 122.3° |
C5' | C4' | O4' | C1' | 148.8° | 159.4° |
C5' | C4' | C3' | C2' | 139.5° | 142.9° |
C5' | C4' | C3' | O3' | 99.9° | 98.4° |
C5' | C4' | C3' | H3' | 20.0° | 24.2° |
H5'1 | C5' | C4' | O4' | 174.3° | 173.5° |
H5'1 | C5' | C4' | C3' | 75.1° | 58.1° |
H5'1 | C5' | C4' | H4' | 52.3° | 64.2° |
H5'2 | C5' | C4' | O4' | 76.2° | 53.6° |
H5'2 | C5' | C4' | C3' | 34.4° | 61.9° |
H5'2 | C5' | C4' | H4' | 161.8° | 175.9° |
O4' | C4' | C3' | H4' | 120.6° | 118.8° |
C4' | O4' | C1' | N1 | 162.4° | 159.3° |
C4' | O4' | C1' | C2' | 39.4° | 40.4° |
C4' | O4' | C1' | H1' | 81.1° | 78.4° |
O4' | C4' | C3' | C2' | 20.0° | 24.1° |
O4' | C4' | C3' | O3' | 140.6° | 142.7° |
O4' | C4' | C3' | H3' | 99.6° | 94.7° |
C3' | C4' | O4' | C1' | 37.0° | 40.5° |
C4' | C3' | C2' | C1' | 1.7° | 0.1° |
C4' | C3' | C2' | O2' | 122.9° | 118.7° |
C4' | C3' | C2' | O3' | 115.1° | 118.7° |
C4' | C3' | C2' | H3' | 124.6° | 118.7° |
C4' | C3' | C2' | H2' | 121.7° | 118.6° |
C4' | C3' | O3' | H3' | 124.6° | 122.7° |
C4' | C3' | O3' | H2 | 180.0° | 61.5° |
H4' | C4' | O4' | C1' | 90.2° | 78.3° |
H4' | C4' | C3' | C2' | 100.6° | 94.8° |
H4' | C4' | C3' | O3' | 20.0° | 23.9° |
H4' | C4' | C3' | H3' | 139.8° | 146.5° |
O4' | C1' | N1 | C2' | 118.6° | 115.5° |
O4' | C1' | N1 | H1' | 121.1° | 122.2° |
O4' | C1' | C2' | H1' | 121.3° | 118.8° |
O4' | C1' | N1 | C6 | 47.8° | 127.9° |
O4' | C1' | N1 | C2 | 132.5° | 52.0° |
O4' | C1' | C2' | O2' | 148.8° | 142.5° |
O4' | C1' | C2' | C3' | 24.0° | 23.8° |
O4' | C1' | C2' | H2' | 95.6° | 94.7° |
N1 | C1' | C2' | H1' | 116.5° | 122.3° |
C1' | N1 | C6 | C2 | 179.7° | 180.0° |
C1' | N1 | C6 | C5 | 179.8° | 179.7° |
C1' | N1 | C6 | H6 | 0.2° | 0.0° |
C1' | N1 | C2 | N3 | 179.8° | 180.0° |
C1' | N1 | C2 | O2 | 0.2° | 0.0° |
N1 | C1' | C2' | O2' | 88.9° | 98.5° |
N1 | C1' | C2' | C3' | 146.2° | 142.7° |
N1 | C1' | C2' | H2' | 26.7° | 24.2° |
C2' | C1' | N1 | C6 | 70.8° | 116.5° |
C2' | C1' | N1 | C2 | 108.9° | 63.5° |
C1' | C2' | O2' | C3' | 117.5° | 114.7° |
C1' | C2' | O2' | H2' | 123.3° | 122.6° |
C1' | C2' | C3' | H2' | 123.4° | 118.4° |
C1' | C2' | O2' | H1 | 180.0° | 176.2° |
C1' | C2' | C3' | O3' | 113.4° | 118.8° |
C1' | C2' | C3' | H3' | 126.4° | 118.6° |
H1' | C1' | N1 | C6 | 168.9° | 5.7° |
H1' | C1' | N1 | C2 | 11.4° | 174.3° |
H1' | C1' | C2' | O2' | 27.5° | 23.7° |
H1' | C1' | C2' | C3' | 97.3° | 95.0° |
H1' | C1' | C2' | H2' | 143.1° | 146.4° |
N1 | C6 | C5 | H6 | 180.0° | 179.7° |
N1 | C6 | C5 | C4 | 0.1° | 0.5° |
N1 | C6 | C5 | H5 | 179.9° | 180.0° |
C6 | N1 | C2 | N3 | 0.1° | 0.0° |
C6 | N1 | C2 | O2 | 179.9° | 180.0° |
C2 | N1 | C6 | C5 | 0.1° | 0.3° |
C2 | N1 | C6 | H6 | 179.9° | 180.0° |
N1 | C2 | N3 | C4 | 0.2° | 0.0° |
N1 | C2 | N3 | O2 | 179.9° | 180.0° |
C6 | C5 | C4 | H5 | 180.0° | 179.5° |
C6 | C5 | C4 | N3 | 0.2° | 0.5° |
C6 | C5 | C4 | N4 | 179.8° | 179.7° |
H6 | C6 | C5 | C4 | 179.9° | 179.7° |
H6 | C6 | C5 | H5 | 0.1° | 0.3° |
C5 | C4 | N3 | N4 | 180.0° | 179.8° |
C5 | C4 | N3 | C2 | 0.3° | 0.2° |
C5 | C4 | N4 | HN41 | 54.7° | 179.7° |
C5 | C4 | N4 | HN42 | 180.0° | 0.5° |
H5 | C5 | C4 | N3 | 179.8° | 180.0° |
H5 | C5 | C4 | N4 | 0.2° | 0.3° |
C4 | N3 | C2 | O2 | 179.8° | 180.0° |
N3 | C4 | N4 | HN41 | 125.3° | 0.1° |
N3 | C4 | N4 | HN42 | 0.0° | 179.7° |
N4 | C4 | N3 | C2 | 179.7° | 180.0° |
C4 | N4 | HN41 | HN42 | 132.9° | 179.8° |
O2' | C2' | C3' | H2' | 115.4° | 122.7° |
O2' | C2' | C3' | O3' | 7.8° | 0.1° |
O2' | C2' | C3' | H3' | 112.5° | 122.5° |
C3' | C2' | O2' | H1 | 62.5° | 61.5° |
C2' | C3' | O3' | H3' | 120.0° | 122.6° |
C2' | C3' | O3' | H2 | 64.6° | 176.2° |
H2' | C2' | O2' | H1 | 56.7° | 61.2° |
H2' | C2' | C3' | O3' | 123.2° | 122.7° |
H2' | C2' | C3' | H3' | 2.9° | 0.2° |
H3' | C3' | O3' | H2 | 55.4° | 61.2° |