Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.43Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | C | sing | 1.51Å | 1.57Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| CB | SG | sing | 1.81Å | 1.85Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CB | HB3 | sing | 1.09Å | 1.10Å | |
| SG | OD1 | sing | 1.52Å | 1.56Å | |
| SG | OD2 | doub | 1.42Å | 1.56Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.37Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| OD1 | H7 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | CB | 109.8° | 109.5° |
| N | CA | C | 107.3° | 109.5° |
| N | CA | HA | 108.7° | 109.5° |
| H | N | H2 | 109.5° | 111.0° |
| CB | CA | C | 116.3° | 109.5° |
| CB | CA | HA | 107.5° | 109.5° |
| CA | CB | SG | 113.3° | 109.5° |
| CA | CB | HB2 | 108.5° | 109.5° |
| CA | CB | HB3 | 108.5° | 109.5° |
| C | CA | HA | 107.0° | 109.5° |
| CA | C | O | 118.8° | 120.0° |
| CA | C | OXT | 118.8° | 120.0° |
| SG | CB | HB2 | 108.5° | 109.5° |
| SG | CB | HB3 | 108.5° | 109.5° |
| CB | SG | OD1 | 110.0° | 103.0° |
| CB | SG | OD2 | 109.8° | 109.4° |
| HB2 | CB | HB3 | 109.5° | 109.5° |
| OD1 | SG | OD2 | 119.9° | 103.0° |
| SG | OD1 | H7 | 109.5° | 114.0° |
| O | C | OXT | 122.4° | 120.0° |
| C | OXT | HXT | 109.5° | 117.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | CB | C | 122.0° | 120.0° |
| N | CA | CB | HA | 118.1° | 120.0° |
| N | CA | C | HA | 116.5° | 120.0° |
| N | CA | CB | SG | 52.8° | 60.0° |
| N | CA | CB | HB2 | 67.8° | 60.0° |
| N | CA | CB | HB3 | 173.4° | 180.0° |
| N | CA | C | O | 127.9° | 20.0° |
| N | CA | C | OXT | 52.8° | 160.0° |
| H | N | CA | CB | 180.0° | 176.0° |
| H | N | CA | C | 52.8° | 64.0° |
| H | N | CA | HA | 62.6° | 56.0° |
| H2 | N | CA | CB | 60.0° | 60.0° |
| H2 | N | CA | C | 67.2° | 60.0° |
| H2 | N | CA | HA | 177.3° | 180.0° |
| CB | CA | C | HA | 120.1° | 120.0° |
| CA | CB | SG | HB2 | 120.6° | 120.0° |
| CA | CB | SG | HB3 | 120.6° | 120.0° |
| CA | CB | HB2 | HB3 | 118.3° | 120.0° |
| CA | CB | SG | OD1 | 76.1° | 180.0° |
| CA | CB | SG | OD2 | 57.8° | 71.0° |
| CB | CA | C | O | 108.7° | 100.0° |
| CB | CA | C | OXT | 70.6° | 80.0° |
| C | CA | CB | SG | 174.8° | 180.0° |
| C | CA | CB | HB2 | 54.3° | 60.0° |
| C | CA | CB | HB3 | 64.6° | 60.0° |
| CA | C | O | OXT | 179.3° | 180.0° |
| CA | C | OXT | HXT | 179.3° | 180.0° |
| HA | CA | CB | SG | 65.3° | 60.0° |
| HA | CA | CB | HB2 | 174.2° | NaN° |
| HA | CA | CB | HB3 | 55.3° | 60.0° |
| HA | CA | C | O | 11.4° | 140.0° |
| HA | CA | C | OXT | 169.3° | 40.0° |
| SG | CB | HB2 | HB3 | 118.2° | 120.0° |
| CB | SG | OD1 | OD2 | 128.6° | 113.8° |
| CB | SG | OD1 | H7 | 128.6° | 180.0° |
| HB2 | CB | SG | OD1 | 44.5° | 60.0° |
| HB2 | CB | SG | OD2 | 178.4° | 49.0° |
| HB3 | CB | SG | OD1 | 163.3° | 60.0° |
| HB3 | CB | SG | OD2 | 62.8° | 169.1° |
| OD2 | SG | OD1 | H7 | 0.0° | 66.2° |
| O | C | OXT | HXT | 0.0° | 0.0° |
